BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0520.0046.p (261 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B4AJD8.1 B4AJD8_BACPU YtlI 206 1e-51 Q4ES17.1 Q4ES17_LISMO Transcriptional regulator, LysR family 202 2e-50 Q8Y4T0.1 Q8Y4T0_LISMO Lmo2352 protein 202 2e-50 Q928T6.1 Q928T6_LISIN Lin2446 protein 202 3e-50 Q71X77.1 Q71X77_LISMF Transcriptional regulator, LysR family 201 5e-50 >B4AJD8.1 B4AJD8_BACPU YtlI Length = 294 Score = 206 bits (525), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 108/239 (45%), Positives = 145/239 (60%), Gaps = 1/239 (0%) Query: 1 MEIRLIKTFQTIVKLGNFQRAAAALQYSQPTITSQIKKLEEELGVKLFERGKTITLTTAG 60 MEIR I+TF TIVK GNF +AAAAL YSQPTIT IK LEEE+G KL ERGKT+ LT +G Sbjct: 1 MEIRAIRTFATIVKYGNFLKAAAALNYSQPTITLHIKHLEEEIGEKLLERGKTLKLTASG 60 Query: 61 RLLHERADSLLREYDDLNVALYDFIQGDAGLVRIGASEPSASNRVPDILASFTRKKPKAQ 120 +L +ERA+SLL EY+ L L D G AG +RIG SEP+AS P +LA F + P + Sbjct: 61 QLFYERANSLLNEYEKLTKTLQDLEVGIAGFIRIGVSEPTASLEFPSLLAEFKERFPNVE 120 Query: 121 TKVTIGTTRELVNMLLEDQIDLALCNQXXXXXXXXXXXXXXXTFKLIVPADHPLAAREHI 180 V + L ++L D+ID A+C L+VP+ H LA ++ Sbjct: 121 FSVQVADANTLSSLLSHDEIDFAICGAPEASMENSYKPLFQDDIVLLVPSSHRLAEKDAA 180 Query: 181 RLKDLQDEVFLFTPGSCAFRIRIEEMITKHIGKLRQSSIEVAGITAIKYYVQSRLGIAL 239 + DL++E LFTP +C RI+IE+ I IG + +E+ + K+YVQ+ LG++L Sbjct: 181 EVTDLENETILFTPHNCPIRIQIEQQIVNVIGS-NYNKLEITSSMSHKHYVQAGLGVSL 238 >Q4ES17.1 Q4ES17_LISMO Transcriptional regulator, LysR family Length = 299 Score = 202 bits (514), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 101/239 (42%), Positives = 149/239 (62%), Gaps = 1/239 (0%) Query: 1 MEIRLIKTFQTIVKLGNFQRAAAALQYSQPTITSQIKKLEEELGVKLFERGKTITLTTAG 60 ME R IKTF T+V G+FQRAA L YSQPTI+ +IK+LE++L V+LFERGKT+ LT AG Sbjct: 1 MEFRTIKTFYTVVNTGSFQRAAEVLNYSQPTISMRIKQLEQDLDVQLFERGKTLKLTHAG 60 Query: 61 RLLHERADSLLREYDDLNVALYDFIQGDAGLVRIGASEPSASNRVPDILASFTRKKPKAQ 120 RL +ERA L+ +Y+ L+ ++D G+AGL+++G SEPSAS +P IL +F PK Sbjct: 61 RLFYERAGQLIAQYEVLDHTIFDLKNGNAGLIKVGISEPSASLILPKILKAFLADFPKLM 120 Query: 121 TKVTIGTTRELVNMLLEDQIDLALCNQXXXXXXXXXXXXXXXTFKLIVPADHPLAAREHI 180 V++ L++ +ID A+C + T LIV HPLA+R + Sbjct: 121 VNVSVDDANTCSQKLIDGEIDFAICGEPELILENFYFPFFHDTLDLIVSESHPLASRTSV 180 Query: 181 RLKDLQDEVFLFTPGSCAFRIRIEEMITKHIGKLRQSSIEVAGITAIKYYVQSRLGIAL 239 L+DL+DE F+FTP +C RI+IE+ + + IG +E+ + KY+V+ +G+++ Sbjct: 181 ELRDLRDECFIFTPANCPIRIQIEQHLKRAIGS-DYKKMELTSSMSHKYFVRENVGVSI 238 >Q8Y4T0.1 Q8Y4T0_LISMO Lmo2352 protein Length = 299 Score = 202 bits (514), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 101/239 (42%), Positives = 148/239 (61%), Gaps = 1/239 (0%) Query: 1 MEIRLIKTFQTIVKLGNFQRAAAALQYSQPTITSQIKKLEEELGVKLFERGKTITLTTAG 60 ME R IKTF T+V G+FQRAA L YSQPTI+ +IK+LE++L V+LFERGKT+ LT AG Sbjct: 1 MEFRTIKTFYTVVNTGSFQRAAEVLNYSQPTISMRIKQLEQDLDVQLFERGKTLKLTHAG 60 Query: 61 RLLHERADSLLREYDDLNVALYDFIQGDAGLVRIGASEPSASNRVPDILASFTRKKPKAQ 120 RL +ERA L+ +Y+ L+ ++D G+AGL+++G SEPSAS P IL +F PK Sbjct: 61 RLFYERAGQLIAQYEVLDHTIFDLKNGNAGLIKVGISEPSASLVFPKILKTFLADFPKLM 120 Query: 121 TKVTIGTTRELVNMLLEDQIDLALCNQXXXXXXXXXXXXXXXTFKLIVPADHPLAAREHI 180 V++ L++ +ID A+C + T LIV HPLA+R + Sbjct: 121 VNVSVDDANTCSQKLIDGEIDFAICGEPELILENFYFPFFHDTLDLIVSESHPLASRTSV 180 Query: 181 RLKDLQDEVFLFTPGSCAFRIRIEEMITKHIGKLRQSSIEVAGITAIKYYVQSRLGIAL 239 L+DL+DE F+FTP +C RI+IE+ + + IG +E+ + KY+V+ +G+++ Sbjct: 181 ELRDLRDECFIFTPANCPIRIQIEQHLKRAIGS-DYKKMELTSSMSHKYFVRENVGVSI 238 >Q928T6.1 Q928T6_LISIN Lin2446 protein Length = 299 Score = 202 bits (513), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 102/239 (42%), Positives = 148/239 (61%), Gaps = 1/239 (0%) Query: 1 MEIRLIKTFQTIVKLGNFQRAAAALQYSQPTITSQIKKLEEELGVKLFERGKTITLTTAG 60 ME R IKTF T+V G+FQRAA L YSQPTI+ +IK+LE++L V+LFERGKT+ LT AG Sbjct: 1 MEFRTIKTFYTVVNTGSFQRAAEVLNYSQPTISMRIKQLEQDLDVQLFERGKTLKLTHAG 60 Query: 61 RLLHERADSLLREYDDLNVALYDFIQGDAGLVRIGASEPSASNRVPDILASFTRKKPKAQ 120 RL +ERA L+ +Y+ L+ ++D G+AGL++IG SEPSAS +P IL F PK Sbjct: 61 RLFYERAGQLIAQYEVLDHTIFDLKNGNAGLIKIGISEPSASLVLPQILKQFLTDFPKLM 120 Query: 121 TKVTIGTTRELVNMLLEDQIDLALCNQXXXXXXXXXXXXXXXTFKLIVPADHPLAAREHI 180 V++ L++ +ID A+C + T LIV +HPLA+R + Sbjct: 121 VNVSVDDANTCSQKLIDGEIDFAICGEPELILENFYFPFFHDTLDLIVSENHPLASRTSV 180 Query: 181 RLKDLQDEVFLFTPGSCAFRIRIEEMITKHIGKLRQSSIEVAGITAIKYYVQSRLGIAL 239 L DL+DE F+FTP +C RI+IE+ + + IG +E+ + KY+V+ +G+++ Sbjct: 181 ELLDLRDECFIFTPANCPIRIQIEQHLKRAIGS-DYKKMELTSSMSHKYFVRENVGVSI 238 >Q71X77.1 Q71X77_LISMF Transcriptional regulator, LysR family Length = 299 Score = 201 bits (511), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 100/239 (41%), Positives = 148/239 (61%), Gaps = 1/239 (0%) Query: 1 MEIRLIKTFQTIVKLGNFQRAAAALQYSQPTITSQIKKLEEELGVKLFERGKTITLTTAG 60 ME R IKTF T+V G+FQRAA L YSQPTI+ +IK+LE++L V+LFERGKT+ LT AG Sbjct: 1 MEFRTIKTFYTVVNTGSFQRAAEVLNYSQPTISMRIKQLEQDLDVQLFERGKTLKLTHAG 60 Query: 61 RLLHERADSLLREYDDLNVALYDFIQGDAGLVRIGASEPSASNRVPDILASFTRKKPKAQ 120 RL +ERA L+ +Y+ L+ ++D G+AGL+++G SEPSAS P IL +F PK Sbjct: 61 RLFYERAGQLIAQYEVLDHTIFDLKNGNAGLIKVGISEPSASLVFPKILKTFLADFPKLM 120 Query: 121 TKVTIGTTRELVNMLLEDQIDLALCNQXXXXXXXXXXXXXXXTFKLIVPADHPLAAREHI 180 V++ L++ +ID A+C + + LIV HPLA+R + Sbjct: 121 VNVSVDDANTCSQKLIDGEIDFAICGEPELILENFYFPFFHDSLDLIVSESHPLASRTSV 180 Query: 181 RLKDLQDEVFLFTPGSCAFRIRIEEMITKHIGKLRQSSIEVAGITAIKYYVQSRLGIAL 239 L+DL+DE F+FTP +C RI+IE+ + + IG +E+ + KY+V+ +G+++ Sbjct: 181 ELRDLRDECFIFTPANCPIRIQIEQHLKRAIGS-DYKKMELTSSMSHKYFVRENVGVSI 238 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.137 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,218,897,652 Number of extensions: 41851689 Number of successful extensions: 146818 Number of sequences better than 1.0e-05: 14041 Number of HSP's gapped: 143082 Number of HSP's successfully gapped: 14041 Length of query: 261 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 128 Effective length of database: 1,807,701,208 Effective search space: 231385754624 Effective search space used: 231385754624 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)