BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0520.0039.p
         (126 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KJG8.1 B3KJG8_9BACI Putative uncharacterized protein                185   1e-45
B1DG92.1 B1DG92_9BACL Putative uncharacterized protein                159   7e-38

>B3KJG8.1 B3KJG8_9BACI Putative uncharacterized protein
          Length = 178

 Score =  185 bits (470), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 87/126 (69%), Positives = 105/126 (83%)

Query: 1   VLYPLHEETVRRMSKEPVAAFYKREDRLHEWKREQGRPFIIVESLEGKRKKYTPLDSALR 60
           VLYPLHEETV+RM KEPV+ +YKRE +L EW  E GRP +++ES E KRKKYTP+D+ALR
Sbjct: 52  VLYPLHEETVKRMFKEPVSPYYKREKQLQEWIEEHGRPSVVIESFESKRKKYTPIDTALR 111

Query: 61  HISEVYPSPYFLYLTPETANQFASYASFEEWIVKLRLILSAAPAYVHPRLEKFRHRWDIA 120
           H+ E Y SP+FL LTPE AN FAS++SFEEWIVKLRLIL + P  +HPRLEKFRHRWD+A
Sbjct: 112 HLVEKYGSPHFLLLTPEVANVFASFSSFEEWIVKLRLILLSEPPVLHPRLEKFRHRWDVA 171

Query: 121 GEEKRE 126
           GE++ E
Sbjct: 172 GEKREE 177


>B1DG92.1 B1DG92_9BACL Putative uncharacterized protein
          Length = 173

 Score =  159 bits (402), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 76/121 (62%), Positives = 92/121 (76%), Gaps = 1/121 (0%)

Query: 1   VLYPLHEETVRRMSKEPVAAFYKREDRLHEWKREQG-RPFIIVESLEGKRKKYTPLDSAL 59
           VLYPLHEET +RM K PV  +YKRED L  W+RE G    I+VE+ EGKRKKYTP+++A+
Sbjct: 53  VLYPLHEETAKRMWKRPVEPYYKREDFLFGWRREHGDEGMIVVENWEGKRKKYTPIEAAI 112

Query: 60  RHISEVYPSPYFLYLTPETANQFASYASFEEWIVKLRLILSAAPAYVHPRLEKFRHRWDI 119
           RH+ E YP P FLY++PETAN FASY SFEEWI K+RLI++  P   HP L KFRHRWD+
Sbjct: 113 RHLMEAYPPPLFLYVSPETANAFASYHSFEEWIGKIRLIITEPPPDAHPNLTKFRHRWDV 172

Query: 120 A 120
            
Sbjct: 173 G 173


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.320    0.136    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 773,832,389
Number of extensions: 28322226
Number of successful extensions: 69297
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 69296
Number of HSP's successfully gapped: 2
Length of query: 126
Length of database: 3,060,696,203
Length adjustment: 91
Effective length of query: 35
Effective length of database: 2,203,383,838
Effective search space: 77118434330
Effective search space used: 77118434330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)