BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0520.0028.p (166 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q2B6Y1.1 Q2B6Y1_9BACI Probable glycine betaine/carnitine/choline... 157 3e-37 C5D4L5.1 C5D4L5_9BACI Binding-protein-dependent transport system... 135 1e-30 C3J693.1 C3J693_9BACI Binding-protein-dependent transport system... 135 2e-30 A0AIM5.1 A0AIM5_LISW6 Complete genome EC=3.6.3.32 127 3e-28 Q92BT3.1 Q92BT3_LISIN Lin1461 protein 126 5e-28 >Q2B6Y1.1 Q2B6Y1_9BACI Probable glycine betaine/carnitine/choline ABC transporter Length = 517 Score = 157 bits (397), Expect = 3e-37, Method: Composition-based stats. Identities = 80/148 (54%), Positives = 106/148 (71%), Gaps = 7/148 (4%) Query: 1 MNHVWDTLVAD-----WPMILDKTGEHMYLSLVSVCIAGLIAIPLGIYLTSRKSLANSII 55 MN + LV D WP IL+ +H++LS+VS+ IA I++PLGI+++ RK LA II Sbjct: 1 MNDNFFVLVVDIFKNRWPEILEALQQHLFLSVVSIVIAAAISLPLGIFISRRKKLAEPII 60 Query: 56 TIISAVQTIPSLALFGFMIPLVGIGTTPAXXXXALTLYALLPMLQNTYVGISGVNPALIE 115 + S QTIPSLALFGF++PL GIG A ALT+YALLP+L+NTY GI+GV+ + +E Sbjct: 61 GVTSIFQTIPSLALFGFLLPLFGIGNVTA--IIALTVYALLPLLRNTYTGINGVDQSAVE 118 Query: 116 AGTGMGMTRWQMMTMIQLPIARSIIMAG 143 AG GMGMT Q++ MI+LP+A IIMAG Sbjct: 119 AGRGMGMTSNQILRMIELPLALPIIMAG 146 >C5D4L5.1 C5D4L5_9BACI Binding-protein-dependent transport systems inner membrane component Length = 211 Score = 135 bits (340), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 72/123 (58%), Positives = 93/123 (75%), Gaps = 2/123 (1%) Query: 21 EHMYLSLVSVCIAGLIAIPLGIYLTSRKSLANSIITIISAVQTIPSLALFGFMIPLVGIG 80 EH+ LS ++ IA L+A+PLGI LT K LA II I + +QTIPSLAL GFM+P+ GIG Sbjct: 20 EHILLSGTAMIIAILVAVPLGIVLTRHKKLAEPIIGIAAIIQTIPSLALLGFMLPIFGIG 79 Query: 81 TTPAXXXXALTLYALLPMLQNTYVGISGVNPALIEAGTGMGMTRWQMMTMIQLPIARSII 140 PA ALTLYALLP+L+NTY GI GV+PAL++AG GMGMT Q++ M++LP++ +I Sbjct: 80 KLPAII--ALTLYALLPILRNTYTGILGVDPALVDAGRGMGMTSRQILWMVELPLSLPVI 137 Query: 141 MAG 143 MAG Sbjct: 138 MAG 140 >C3J693.1 C3J693_9BACI Binding-protein-dependent transport systems inner membrane component Length = 209 Score = 135 bits (339), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 71/123 (57%), Positives = 94/123 (76%), Gaps = 2/123 (1%) Query: 21 EHMYLSLVSVCIAGLIAIPLGIYLTSRKSLANSIITIISAVQTIPSLALFGFMIPLVGIG 80 EH+ LS +++ IA +IA+PLGI LT + LA II + + +QTIPSLAL GFM+PL GIG Sbjct: 20 EHVLLSAIAMSIAIVIAVPLGIALTRYRKLAEPIIGVAAIIQTIPSLALLGFMLPLFGIG 79 Query: 81 TTPAXXXXALTLYALLPMLQNTYVGISGVNPALIEAGTGMGMTRWQMMTMIQLPIARSII 140 PA ALTLYALLP+L+NTY GI GV+PAL++AG GMGMT Q++ M++LP++ +I Sbjct: 80 KLPAII--ALTLYALLPILRNTYTGILGVDPALVDAGRGMGMTSRQILWMVELPLSLPVI 137 Query: 141 MAG 143 MAG Sbjct: 138 MAG 140 >A0AIM5.1 A0AIM5_LISW6 Complete genome EC=3.6.3.32 Length = 504 Score = 127 bits (319), Expect = 3e-28, Method: Composition-based stats. Identities = 74/143 (51%), Positives = 95/143 (66%), Gaps = 2/143 (1%) Query: 1 MNHVWDTLVADWPMILDKTGEHMYLSLVSVCIAGLIAIPLGIYLTSRKSLANSIITIISA 60 MN + DT + +H+ +S VS+ IA LIA+PLGIYLT K LA II + + Sbjct: 1 MNTILDTFAVRKDELFTALVQHIQISFVSLFIAVLIALPLGIYLTRHKRLAEPIIQVAAI 60 Query: 61 VQTIPSLALFGFMIPLVGIGTTPAXXXXALTLYALLPMLQNTYVGISGVNPALIEAGTGM 120 QTIPSLAL G +IPLVGIG PA AL +YALLP+L+NTY GI V+PAL+EA M Sbjct: 61 FQTIPSLALLGLLIPLVGIGIVPA--IIALVIYALLPILRNTYTGIKEVDPALVEASRAM 118 Query: 121 GMTRWQMMTMIQLPIARSIIMAG 143 GM +W+ + +QLP+A +IMAG Sbjct: 119 GMNKWKRLYKVQLPLAMPVIMAG 141 >Q92BT3.1 Q92BT3_LISIN Lin1461 protein Length = 504 Score = 126 bits (317), Expect = 5e-28, Method: Composition-based stats. Identities = 74/143 (51%), Positives = 95/143 (66%), Gaps = 2/143 (1%) Query: 1 MNHVWDTLVADWPMILDKTGEHMYLSLVSVCIAGLIAIPLGIYLTSRKSLANSIITIISA 60 MN + DT + +H+ +S VS+ IA LIA+PLGIYLT K LA II + + Sbjct: 1 MNTLLDTFAVRKDELFTALVQHIQISFVSLFIAVLIALPLGIYLTRHKRLAEPIIQVAAI 60 Query: 61 VQTIPSLALFGFMIPLVGIGTTPAXXXXALTLYALLPMLQNTYVGISGVNPALIEAGTGM 120 QTIPSLAL G +IPLVGIG PA AL +YALLP+L+NTY GI V+PAL+EA M Sbjct: 61 FQTIPSLALLGLLIPLVGIGIVPA--IIALVIYALLPILRNTYTGIKEVDPALVEASRAM 118 Query: 121 GMTRWQMMTMIQLPIARSIIMAG 143 GM +W+ + +QLP+A +IMAG Sbjct: 119 GMNKWKRLYKVQLPLAMPVIMAG 141 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.139 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 905,165,830 Number of extensions: 33834243 Number of successful extensions: 126823 Number of sequences better than 1.0e-05: 2466 Number of HSP's gapped: 126308 Number of HSP's successfully gapped: 2489 Length of query: 166 Length of database: 3,060,696,203 Length adjustment: 125 Effective length of query: 41 Effective length of database: 1,883,069,328 Effective search space: 77205842448 Effective search space used: 77205842448 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 126 (53.1 bits)