BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0520.0027.p (379 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A4IK06.1 A4IK06_GEOTN Glycine betaine/carnitine/choline ABC tran... 374 e-102 B4BRA4.1 B4BRA4_9BACI Glycine betaine/L-proline ABC transporter,... 374 e-102 C3J694.1 C3J694_9BACI Glycine betaine/L-proline ABC transporter,... 366 2e-99 B7YEV6.1 B7YEV6_9BACI Glycine betaine/L-proline ABC transporter,... 366 2e-99 Q5L381.1 Q5L381_GEOKA Glycine betaine/carnitine/choline ABC tran... 365 3e-99 >A4IK06.1 A4IK06_GEOTN Glycine betaine/carnitine/choline ABC transporter ATP-binding protein Length = 377 Score = 374 bits (960), Expect = e-102, Method: Compositional matrix adjust. Identities = 194/370 (52%), Positives = 260/370 (70%), Gaps = 9/370 (2%) Query: 7 VEFRNVSKDYGSGSV-LRNFNLTVPKGQIVTIIGPSGCGKTTLLKMINRLVEPSIGNVLV 65 + F NV+K Y G V L+N NL + KG++V +IGPSGCGKTT ++MINRL+EP+ G V + Sbjct: 2 IRFENVTKQYEDGFVALKNINLEIRKGELVALIGPSGCGKTTTMRMINRLIEPTSGKVYI 61 Query: 66 EGTDIGTLDAVELRRDIGYVIQQIGLFPHMTIEENISIVPKLKGAGKTERKERVDALLSL 125 +G DI LD VELRR+IGYVIQQIGLFPHMTI ENI++VPKLK K ++RVD LL L Sbjct: 62 DGQDISELDPVELRRNIGYVIQQIGLFPHMTIAENIALVPKLKKWEKHAYEKRVDELLEL 121 Query: 126 IGLPPEQYRKRYPHELSGGQQQRIGVARALASDPSIILMDEPFSALDPISRVQLQKELIN 185 +GL P ++ RYP ELSGGQQQR+GV RALA++P IILMDEPFSALDPISR QLQ ++I Sbjct: 122 VGLDPATFKHRYPSELSGGQQQRVGVVRALAAEPDIILMDEPFSALDPISREQLQDDIIR 181 Query: 186 LNQRLHKTIVFVTHDIDEALKIADRIILLNEGEVVQNSTPEELLAHPANDFVIEFVGQER 245 L + +HKTIVFVTHD+DEA+KIADRI L+ +GE+VQ +TP+++L PAN FV EF+G++R Sbjct: 182 LQEEIHKTIVFVTHDMDEAIKIADRIALMKDGEIVQFATPDQMLRRPANSFVREFIGEDR 241 Query: 246 FQPALPQG---SAHHIMIDGL-SIGSESPISEALEVMRINRVEGLAVIGKWGDLLGIVGI 301 Q Q +A +M D + +I ++EA +M+ +V+ L V+ K LGIV + Sbjct: 242 LQMRTRQTAVPTAEDLMSDDVATISPRRGLAEAFRLMKARKVDSLVVVDKKRSFLGIVTL 301 Query: 302 GEIGQHLPLDSRLKVGDLLQTDTVALQEHTPLSEVFELMRRSP--ILPVVDDDNRLIGTV 359 +I Q + L V D+ D LQ+ +++V L + S I+PV+D D RL+G + Sbjct: 302 KQIEQRYN-EEHLLVADIADYDVTTLQKEAGVTDVAALFQDSDVRIIPVLDGD-RLVGGI 359 Query: 360 TRSCVIEALG 369 TRS ++ AL Sbjct: 360 TRSSMMRALA 369 >B4BRA4.1 B4BRA4_9BACI Glycine betaine/L-proline ABC transporter, ATPase subunit Length = 377 Score = 374 bits (960), Expect = e-102, Method: Compositional matrix adjust. Identities = 194/370 (52%), Positives = 260/370 (70%), Gaps = 9/370 (2%) Query: 7 VEFRNVSKDYGSGSV-LRNFNLTVPKGQIVTIIGPSGCGKTTLLKMINRLVEPSIGNVLV 65 + F NV+K Y G V L+N NL + KG++V +IGPSGCGKTT ++MINRL+EP+ G V + Sbjct: 2 IRFENVTKQYEDGFVALKNINLEIRKGELVALIGPSGCGKTTTMRMINRLIEPTSGKVYI 61 Query: 66 EGTDIGTLDAVELRRDIGYVIQQIGLFPHMTIEENISIVPKLKGAGKTERKERVDALLSL 125 +G DI LD VELRR+IGYVIQQIGLFPHMTI ENI++VPKLK K ++RVD LL L Sbjct: 62 DGQDISELDPVELRRNIGYVIQQIGLFPHMTIAENIALVPKLKKWEKHAYEKRVDELLEL 121 Query: 126 IGLPPEQYRKRYPHELSGGQQQRIGVARALASDPSIILMDEPFSALDPISRVQLQKELIN 185 +GL P ++ RYP ELSGGQQQR+GV RALA++P IILMDEPFSALDPISR QLQ ++I Sbjct: 122 VGLDPATFKHRYPSELSGGQQQRVGVVRALAAEPDIILMDEPFSALDPISREQLQDDIIR 181 Query: 186 LNQRLHKTIVFVTHDIDEALKIADRIILLNEGEVVQNSTPEELLAHPANDFVIEFVGQER 245 L + +HKTIVFVTHD+DEA+KIADRI L+ +GE+VQ +TP+++L PAN FV EF+G++R Sbjct: 182 LQEEIHKTIVFVTHDMDEAIKIADRIALMKDGEIVQFATPDQMLRRPANSFVREFIGEDR 241 Query: 246 FQPALPQG---SAHHIMIDGL-SIGSESPISEALEVMRINRVEGLAVIGKWGDLLGIVGI 301 Q Q +A +M D + +I ++EA +M+ +V+ L V+ K LGIV + Sbjct: 242 LQMRTRQTAVPTAEDLMSDDVATISPRRGLAEAFRLMKARKVDSLVVVDKKHSFLGIVTL 301 Query: 302 GEIGQHLPLDSRLKVGDLLQTDTVALQEHTPLSEVFELMRRSP--ILPVVDDDNRLIGTV 359 +I Q + L V D+ D LQ+ +++V L + S I+PV+D D RL+G + Sbjct: 302 KQIEQRYN-EEHLLVADIADYDVTTLQKEAGVTDVAALFQDSDVRIIPVLDGD-RLVGGI 359 Query: 360 TRSCVIEALG 369 TRS ++ AL Sbjct: 360 TRSSMMRALA 369 >C3J694.1 C3J694_9BACI Glycine betaine/L-proline ABC transporter, ATPase subunit Length = 375 Score = 366 bits (940), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 191/370 (51%), Positives = 259/370 (70%), Gaps = 11/370 (2%) Query: 7 VEFRNVSKDYGSGSV-LRNFNLTVPKGQIVTIIGPSGCGKTTLLKMINRLVEPSIGNVLV 65 + F NV+K Y G V L+N NL V KG++V +IGPSGCGKTT ++MINRL+EP+ G V + Sbjct: 2 IRFENVTKQYEDGFVALKNINLEVRKGELVALIGPSGCGKTTTMRMINRLIEPTSGKVYI 61 Query: 66 EGTDIGTLDAVELRRDIGYVIQQIGLFPHMTIEENISIVPKLKGAGKTERKERVDALLSL 125 +G DI LD VELRR+IGYVIQQIGLFPHMTI ENI++VPKLK K ++RVD LL L Sbjct: 62 DGQDISQLDPVELRRNIGYVIQQIGLFPHMTIAENIALVPKLKKWEKHAYEKRVDELLEL 121 Query: 126 IGLPPEQYRKRYPHELSGGQQQRIGVARALASDPSIILMDEPFSALDPISRVQLQKELIN 185 +GL P ++ RYP ELSGGQQQR+GV RALA++P IILMDEPFSALDPISR QLQ +++ Sbjct: 122 VGLDPATFKHRYPSELSGGQQQRVGVVRALAAEPDIILMDEPFSALDPISREQLQDDIVR 181 Query: 186 LNQRLHKTIVFVTHDIDEALKIADRIILLNEGEVVQNSTPEELLAHPANDFVIEFVGQER 245 L + +HKTIVFVTHD+DEA+KIADRI L+ +GE+VQ +TP+++L PAN FV EF+G++R Sbjct: 182 LQEEIHKTIVFVTHDMDEAIKIADRIALMKDGEIVQFATPDQMLRRPANSFVREFIGEDR 241 Query: 246 F---QPALPQGSAHHIM-IDGLSIGSESPISEALEVMRINRVEGLAVIGKWGDLLGIVGI 301 Q A+P +A +M +D +I ++EA +M+ +V+ L V+ K LGIV + Sbjct: 242 LRTRQTAVP--TAEDLMSVDVATISPRRGLAEAFRLMKAKKVDSLIVVDKKQAFLGIVTL 299 Query: 302 GEIGQHLPLDSRLKVGDLLQTDTVALQEHTPLSEVFELMRRSP--ILPVVDDDNRLIGTV 359 +I + + L V D+ D L + ++ V L + I+PV+D D +L+G + Sbjct: 300 KQIEKRYQ-EEHLLVADIADYDVTTLAKEADVTNVAALFQDPDVRIIPVLDGD-QLVGGI 357 Query: 360 TRSCVIEALG 369 TRS ++ AL Sbjct: 358 TRSSMMRALA 367 >B7YEV6.1 B7YEV6_9BACI Glycine betaine/L-proline ABC transporter, ATPase subunit Length = 375 Score = 366 bits (940), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 191/370 (51%), Positives = 259/370 (70%), Gaps = 11/370 (2%) Query: 7 VEFRNVSKDYGSGSV-LRNFNLTVPKGQIVTIIGPSGCGKTTLLKMINRLVEPSIGNVLV 65 + F NV+K Y G V L+N NL V KG++V +IGPSGCGKTT ++MINRL+EP+ G V + Sbjct: 2 IRFENVTKQYEDGFVALKNINLEVRKGELVALIGPSGCGKTTTMRMINRLIEPTSGKVYI 61 Query: 66 EGTDIGTLDAVELRRDIGYVIQQIGLFPHMTIEENISIVPKLKGAGKTERKERVDALLSL 125 +G DI LD VELRR+IGYVIQQIGLFPHMTI ENI++VPKLK K ++RVD LL L Sbjct: 62 DGQDISQLDPVELRRNIGYVIQQIGLFPHMTIAENIALVPKLKKWEKHAYEKRVDELLEL 121 Query: 126 IGLPPEQYRKRYPHELSGGQQQRIGVARALASDPSIILMDEPFSALDPISRVQLQKELIN 185 +GL P ++ RYP ELSGGQQQR+GV RALA++P IILMDEPFSALDPISR QLQ +++ Sbjct: 122 VGLDPATFKHRYPSELSGGQQQRVGVVRALAAEPDIILMDEPFSALDPISREQLQDDIVR 181 Query: 186 LNQRLHKTIVFVTHDIDEALKIADRIILLNEGEVVQNSTPEELLAHPANDFVIEFVGQER 245 L + +HKTIVFVTHD+DEA+KIADRI L+ +GE+VQ +TP+++L PAN FV EF+G++R Sbjct: 182 LQEEIHKTIVFVTHDMDEAIKIADRIALMKDGEIVQFATPDQMLRRPANSFVREFIGEDR 241 Query: 246 F---QPALPQGSAHHIM-IDGLSIGSESPISEALEVMRINRVEGLAVIGKWGDLLGIVGI 301 Q A+P +A +M +D +I ++EA +M+ +V+ L V+ K LGIV + Sbjct: 242 LRTRQTAVP--TAEDLMSVDVATISPRRGLAEAFRLMKAKKVDSLIVVDKKQAFLGIVTL 299 Query: 302 GEIGQHLPLDSRLKVGDLLQTDTVALQEHTPLSEVFELMRRSP--ILPVVDDDNRLIGTV 359 +I + + L V D+ D L + ++ V L + I+PV+D D +L+G + Sbjct: 300 KQIEKRYQ-EEHLLVADIADYDVTTLAKEADVTNVAALFQDPDVRIIPVLDGD-QLVGGI 357 Query: 360 TRSCVIEALG 369 TRS ++ AL Sbjct: 358 TRSSMMRALA 367 >Q5L381.1 Q5L381_GEOKA Glycine betaine/carnitine/choline ABC transporter (ATP-binding protein) Length = 375 Score = 365 bits (938), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 191/370 (51%), Positives = 258/370 (69%), Gaps = 11/370 (2%) Query: 7 VEFRNVSKDYGSGSV-LRNFNLTVPKGQIVTIIGPSGCGKTTLLKMINRLVEPSIGNVLV 65 + F NV+K Y G V L+N NL + KG++V +IGPSGCGKTT ++MINRL+EP+ G V + Sbjct: 2 IRFENVTKQYEDGFVALKNINLEIRKGELVALIGPSGCGKTTTMRMINRLIEPTSGKVYI 61 Query: 66 EGTDIGTLDAVELRRDIGYVIQQIGLFPHMTIEENISIVPKLKGAGKTERKERVDALLSL 125 +G DI LD VELRR+IGYVIQQIGLFPHMTI ENI++VPKLK K ++RVD LL L Sbjct: 62 DGQDISQLDPVELRRNIGYVIQQIGLFPHMTIAENIALVPKLKKWEKHAYEKRVDELLEL 121 Query: 126 IGLPPEQYRKRYPHELSGGQQQRIGVARALASDPSIILMDEPFSALDPISRVQLQKELIN 185 +GL P ++ RYP ELSGGQQQR+GV RALA++P IILMDEPFSALDPISR QLQ +++ Sbjct: 122 VGLDPATFKHRYPSELSGGQQQRVGVVRALAAEPDIILMDEPFSALDPISREQLQDDIVR 181 Query: 186 LNQRLHKTIVFVTHDIDEALKIADRIILLNEGEVVQNSTPEELLAHPANDFVIEFVGQER 245 L + +HKTIVFVTHD+DEA+KIADRI L+ +GE+VQ +TP+++L PAN FV EF+G++R Sbjct: 182 LQEEIHKTIVFVTHDMDEAIKIADRIALMKDGEIVQFATPDQMLRRPANSFVREFIGEDR 241 Query: 246 FQ---PALPQGSAHHIM-IDGLSIGSESPISEALEVMRINRVEGLAVIGKWGDLLGIVGI 301 + A+P +A +M D +I ++EA +M+ +V+ L V+ K LGIV + Sbjct: 242 LRIRHTAVP--TAEDLMSADVATISPRRGLAEAFRLMKAKKVDSLVVVDKKQVFLGIVTL 299 Query: 302 GEIGQHLPLDSRLKVGDLLQTDTVALQEHTPLSEVFELMRRSP--ILPVVDDDNRLIGTV 359 +I Q + L V D+ D L + ++ V L + I+PV+D D RL+G + Sbjct: 300 KQIEQRYQ-EEHLLVADIADYDVTTLSKEADVTNVAALFQDPDVRIIPVLDGD-RLVGGI 357 Query: 360 TRSCVIEALG 369 TRS ++ AL Sbjct: 358 TRSSMMRALA 367 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.139 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,192,073,747 Number of extensions: 93554288 Number of successful extensions: 697560 Number of sequences better than 1.0e-05: 100767 Number of HSP's gapped: 515059 Number of HSP's successfully gapped: 110870 Length of query: 379 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 242 Effective length of database: 1,770,017,148 Effective search space: 428344149816 Effective search space used: 428344149816 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)