BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0520.0026.p (261 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A4IPP3.1 A4IPP3_GEOTN Transcriptional regulator IclR family 125 5e-27 B4BNV9.1 B4BNV9_9BACI Transcriptional regulator, IclR family 125 5e-27 Q8ELJ4.1 Q8ELJ4_OCEIH Transcriptional regulator (IclR family) 118 5e-25 B8G7A9.1 B8G7A9_CHLAD Transcriptional regulator, IclR family 117 1e-24 Q3ACM7.1 Q3ACM7_CARHZ Transcriptional regulator, IclR family 114 8e-24 >A4IPP3.1 A4IPP3_GEOTN Transcriptional regulator IclR family Length = 254 Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 81/246 (32%), Positives = 135/246 (54%), Gaps = 7/246 (2%) Query: 6 GTQTLSRALDILFALAEESGTLTVSEIAQKVSIPESTTYRFLQTLEQNGIIERRG---KN 62 G +T+ RA+DIL+ E L+++EIA K+S+ +STT R L TLEQN ++ + K Sbjct: 13 GLRTVQRAIDILYCFTLEEQELSLTEIANKISLAKSTTTRLLATLEQNRLVIKNPETLKY 72 Query: 63 QIGLGLRILDLARSLNMQFQRDLLPLALPIMEKLTETVQETSVLFVRTGVNAVCIQNVKS 122 ++G GL L +++ + +A P+ME+L +ET L+V VCI+ + Sbjct: 73 RLGQGLYYLGHIAGKSIEVRE----IAKPVMERLRNETRETVNLYVLEQGARVCIEQYEG 128 Query: 123 RGLIQFSIENGRILPLHLGASGKCILAFENLKVTERIMSSLENDQERARLSVELEHIRAR 182 ++ ++ G LPL GA GK +LA+++ ERI++ + ++ R RL+ ELE IR R Sbjct: 129 LQSLRHMVKIGERLPLWAGAGGKVLLAYQSPSFQERILAQVPTEERRTRLTAELEMIRQR 188 Query: 183 NYCITKGEVDPDVFAIAAPITDGQGPVIASLSVAGPSFRCNKEHDKAIIARVVSAAEELS 242 + E + A+AAPI + G V A LS++GP+ R + + + V A+ +S Sbjct: 189 GSTSSIDEREVGSAAVAAPIFNIHGEVNACLSISGPTHRFTPQAIRWFESLVKEGAQTIS 248 Query: 243 ALMGNK 248 +G + Sbjct: 249 EKLGYR 254 >B4BNV9.1 B4BNV9_9BACI Transcriptional regulator, IclR family Length = 254 Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 81/246 (32%), Positives = 135/246 (54%), Gaps = 7/246 (2%) Query: 6 GTQTLSRALDILFALAEESGTLTVSEIAQKVSIPESTTYRFLQTLEQNGIIERRG---KN 62 G +T+ RA+DIL+ E L+++EIA K+S+ +STT R L TLEQN ++ + K Sbjct: 13 GLRTVQRAIDILYCFTLEEQELSLTEIANKISLAKSTTTRLLATLEQNRLVIKNPETLKY 72 Query: 63 QIGLGLRILDLARSLNMQFQRDLLPLALPIMEKLTETVQETSVLFVRTGVNAVCIQNVKS 122 ++G GL L +++ + +A P+ME+L +ET L+V VCI+ + Sbjct: 73 RLGQGLYYLGHIAGKSIEVRE----IAKPVMERLRNETRETVNLYVLEQGARVCIEQYEG 128 Query: 123 RGLIQFSIENGRILPLHLGASGKCILAFENLKVTERIMSSLENDQERARLSVELEHIRAR 182 ++ ++ G LPL GA GK +LA+++ ERI++ + ++ R RL+ ELE IR R Sbjct: 129 LQSLRHMVKIGERLPLWAGAGGKVLLAYQSPSFQERILAQVPTEERRTRLTAELEMIRQR 188 Query: 183 NYCITKGEVDPDVFAIAAPITDGQGPVIASLSVAGPSFRCNKEHDKAIIARVVSAAEELS 242 + E + A+AAPI + G V A LS++GP+ R + + + V A+ +S Sbjct: 189 GSTSSIDEREVGSAAVAAPIFNIHGEVNACLSISGPTHRFTPQAIRWFESLVKEGAQTIS 248 Query: 243 ALMGNK 248 +G + Sbjct: 249 EKLGYR 254 >Q8ELJ4.1 Q8ELJ4_OCEIH Transcriptional regulator (IclR family) Length = 255 Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 82/242 (33%), Positives = 128/242 (52%), Gaps = 3/242 (1%) Query: 6 GTQTLSRALDILFALAEESGTLTVSEIAQKVSIPESTTYRFLQTLEQNGIIERRGKN-QI 64 G +TL R++DIL E++ LT++EI+ + +STT R L TLE N +E+ N + Sbjct: 7 GIRTLQRSIDILNCFIEKNSELTLTEISLYTGLAKSTTTRLLSTLEMNNFVEKDEVNAKY 66 Query: 65 GLGLRILDLARSLNMQFQRDLLPLALPIMEKLTETVQETSVLFVRTGVNAVCIQNVKSRG 124 LG +I L F +L LA ME+L E +ET L++ G + VC+Q +S Sbjct: 67 RLGKQIYFLGFVAGQTF--ELNSLAKSTMERLREQTKETVNLYILDGKHRVCVQQFESLQ 124 Query: 125 LIQFSIENGRILPLHLGASGKCILAFENLKVTERIMSSLENDQERARLSVELEHIRARNY 184 ++ I G+ LPL +GASGK LA+++ + E M + + + L EL+ I Y Sbjct: 125 SVKHMISVGQKLPLTVGASGKVFLAYQSKEFIEDAMDTQPLKKSKVDLKNELDLIIKEKY 184 Query: 185 CITKGEVDPDVFAIAAPITDGQGPVIASLSVAGPSFRCNKEHDKAIIARVVSAAEELSAL 244 ++ E + A AAPI + Q V+A LSV+GP+ R + V+ A+ E+S Sbjct: 185 AVSIEERESGTSAAAAPIFNFQNEVVAVLSVSGPASRLKPREWPELRKMVMEASVEISKN 244 Query: 245 MG 246 +G Sbjct: 245 LG 246 >B8G7A9.1 B8G7A9_CHLAD Transcriptional regulator, IclR family Length = 256 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 80/253 (31%), Positives = 132/253 (52%), Gaps = 8/253 (3%) Query: 4 MNGTQTLSRALDILFALAEESGTLTVSEIAQKVSIPESTTYRFLQTLEQNGII-ERRGKN 62 M Q++ RA D+L ALA+ L+VSE+++++ +P +T +R L +L G + + Sbjct: 1 MGMIQSIDRAFDVLEALAQADDDLSVSELSEQLDLPLATVHRLLSSLAARGYVTQEPSTR 60 Query: 63 QIGLGLRILDLARSLNMQFQRDLLPLALPIMEKLTETVQETSVLFVRTGVNAVCIQNVKS 122 + G G R+L++A + DL+ +A + KLT ETS L +R G AV + + S Sbjct: 61 RYGPGPRLLEIAARAAQSRRFDLIRIARAELAKLTAETGETSNLIIRQGDEAVYQEQIPS 120 Query: 123 RGLIQFSIENGRILPLHLGASGKCILAFENLKVTERIMSSLENDQ-------ERARLSVE 175 L++ E G+ PL+ GK ILA ER ++S ++ +R RL E Sbjct: 121 PHLVRMFTEVGQRAPLYCTGGGKAILAALPAAEFERYLASGHFERWTNKTITDRDRLRAE 180 Query: 176 LEHIRARNYCITKGEVDPDVFAIAAPITDGQGPVIASLSVAGPSFRCNKEHDKAIIARVV 235 L R R + + E + V +AAPI D +G V+ ++S++GPS R ++ +A+ RV Sbjct: 181 LALARERGFALDDEEREEGVCCVAAPIFDRRGQVVGAISLSGPSIRLDRARAEALGPRVR 240 Query: 236 SAAEELSALMGNK 248 AA S +G + Sbjct: 241 EAALACSRQLGYR 253 >Q3ACM7.1 Q3ACM7_CARHZ Transcriptional regulator, IclR family Length = 261 Score = 114 bits (285), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 84/250 (33%), Positives = 128/250 (51%), Gaps = 16/250 (6%) Query: 8 QTLSRALDILFALAEESGTLTVSEIAQKVSIPESTTYRFLQTLEQNGIIERRGKNQIG-- 65 Q++ RAL IL + + L V+EIA ++ + +ST + L+TLE G +E +NQ+ Sbjct: 11 QSVDRALRILDTFSLKEKELGVTEIANRLGLHKSTVFGLLRTLEHWGYVE---QNQVTGK 67 Query: 66 --LGLRILDLARSLNMQFQRDLLPLALPIMEKLTETVQETSVLFVRTGVNAVCIQNVKSR 123 LGL++L+L + DL +ALP ++ L E ET L V V I+ V+ Sbjct: 68 YRLGLKLLELGNRVKEGL--DLRAVALPFLQDLVERYGETVHLAVHDRGEIVYIEKVEGP 125 Query: 124 GLIQFSIENGRILPLHLGASGKCILAFENLKVTERIMSSL-------ENDQERARLSVEL 176 I+ + GR P+H GK ILAF K E I+ + + +L EL Sbjct: 126 NAIRMYSQIGRRAPMHCTGVGKAILAFRPEKEIEEIIRTKGLKYFTPNTITDPKKLHEEL 185 Query: 177 EHIRARNYCITKGEVDPDVFAIAAPITDGQGPVIASLSVAGPSFRCNKEHDKAIIARVVS 236 IR Y + + E++ + +AAPI D Q V+A++SVAGPS R +E + +I V Sbjct: 186 SLIRENGYSLDREEIEIGLRCVAAPIRDSQNTVVAAISVAGPSIRMTEEKIQELIVSVKE 245 Query: 237 AAEELSALMG 246 AA E+S +G Sbjct: 246 AALEISKRLG 255 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.134 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,353,958,833 Number of extensions: 50456933 Number of successful extensions: 155150 Number of sequences better than 1.0e-05: 2922 Number of HSP's gapped: 152765 Number of HSP's successfully gapped: 2922 Length of query: 261 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 128 Effective length of database: 1,807,701,208 Effective search space: 231385754624 Effective search space used: 231385754624 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)