BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0520.0025.p (274 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q1AZB9.1 Q1AZB9_RUBXD Putative uncharacterized protein 226 1e-57 A8L1H4.1 A8L1H4_FRASN Putative uncharacterized protein 188 6e-46 Q0S041.1 Q0S041_RHOSR Putative uncharacterized protein 187 7e-46 A4U8Q4.1 A4U8Q4_9BACT Putative uncharacterized protein 186 1e-45 C1AX85.1 C1AX85_RHOOB Putative uncharacterized protein 183 2e-44 >Q1AZB9.1 Q1AZB9_RUBXD Putative uncharacterized protein Length = 274 Score = 226 bits (577), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 114/240 (47%), Positives = 154/240 (64%), Gaps = 3/240 (1%) Query: 26 KKVSVRWRGEIIAESTDVLLLHERGQLPVYYFPAGDVRNDLLTASDRKSFFPLKGEASYW 85 ++V V GE +A+S + LLHE G LPVYYFP DVR +LL +D + P KGEA YW Sbjct: 36 RRVRVELGGETVADSRRMKLLHETGLLPVYYFPEEDVRTELLERTDHTTRCPFKGEAVYW 95 Query: 86 SLQLGDEISENAAWSYEHPIPGREDIAGYYAFYWNAVDGWXXXXXXXXXXXXXDPYKRID 145 +++ G +ENAAW+Y P+ G + G+ AFYW+ +D W DPY RID Sbjct: 96 TVRAGGRTAENAAWAYPEPLEGAPPLGGHIAFYWDRMDRWFEEDEEVDVHPR-DPYHRID 154 Query: 146 ALRSSRHIEIYLNGVKLADSTRPVILFETGVPVRYYLPEDDLNTALLEFSDSKTACPYKG 205 AL SSRH+ + +NG +A++ RPVILFETG+P RYY+P +D+ LL S+S + CPYKG Sbjct: 155 ALPSSRHVRVTVNGELVAETRRPVILFETGLPPRYYIPREDVREELLVPSESSSVCPYKG 214 Query: 206 HASYRSVRIHDELHKDLVWTYASPIAEIPQIAGLFSFYNERVEIFVDGKRQ--PKQAWYR 263 ASY SVR E +DLVW+Y P + ++ GL F+NERV++ VDG+RQ P+ W R Sbjct: 215 VASYWSVRAGGETVEDLVWSYPEPRRDAERVGGLLCFFNERVDLEVDGERQERPETQWSR 274 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 39/100 (39%), Positives = 57/100 (57%) Query: 149 SSRHIEIYLNGVKLADSTRPVILFETGVPVRYYLPEDDLNTALLEFSDSKTACPYKGHAS 208 S R + + L G +ADS R +L ETG+ YY PE+D+ T LLE +D T CP+KG A Sbjct: 34 SPRRVRVELGGETVADSRRMKLLHETGLLPVYYFPEEDVRTELLERTDHTTRCPFKGEAV 93 Query: 209 YRSVRIHDELHKDLVWTYASPIAEIPQIAGLFSFYNERVE 248 Y +VR ++ W Y P+ P + G +FY +R++ Sbjct: 94 YWTVRAGGRTAENAAWAYPEPLEGAPPLGGHIAFYWDRMD 133 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 40/99 (40%), Positives = 54/99 (54%) Query: 25 AKKVSVRWRGEIIAESTDVLLLHERGQLPVYYFPAGDVRNDLLTASDRKSFFPLKGEASY 84 ++ V V GE++AE+ ++L E G P YY P DVR +LL S+ S P KG ASY Sbjct: 159 SRHVRVTVNGELVAETRRPVILFETGLPPRYYIPREDVREELLVPSESSSVCPYKGVASY 218 Query: 85 WSLQLGDEISENAAWSYEHPIPGREDIAGYYAFYWNAVD 123 WS++ G E E+ WSY P E + G F+ VD Sbjct: 219 WSVRAGGETVEDLVWSYPEPRRDAERVGGLLCFFNERVD 257 >A8L1H4.1 A8L1H4_FRASN Putative uncharacterized protein Length = 270 Score = 188 bits (477), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 93/234 (39%), Positives = 135/234 (57%), Gaps = 1/234 (0%) Query: 24 IAKKVSVRWRGEIIAESTDVLLLHERGQLPVYYFPAGDVRNDLLTASDRKSFFPLKGEAS 83 +A++V G+ + ++ +L+E L V+Y P D+R DLL +D ++ P KG AS Sbjct: 36 VAQRVRAELAGQTVLDTRRARILYETNHLGVWYVPLEDIRQDLLEPTDHHTYCPFKGTAS 95 Query: 84 YWSLQLGDEISENAAWSYEHPIPGREDIAGYYAFYWNAVDGWXXXXXXXXXXXXXDPYKR 143 YW+L++GD + EN WSY P+PG IAG AFY++ +D W DPY R Sbjct: 96 YWTLRVGDRVEENVLWSYPEPVPGAPPIAGLAAFYFDRLDAWYEEDEQVFGHPR-DPYHR 154 Query: 144 IDALRSSRHIEIYLNGVKLADSTRPVILFETGVPVRYYLPEDDLNTALLEFSDSKTACPY 203 +D RSS +E+ + G +A + RPV LFET +P R+Y+P +D+ LE S + T C Y Sbjct: 155 VDTRRSSDQVEVLVGGETVARTARPVKLFETSLPPRWYIPLEDVRAEALEGSGTHTVCAY 214 Query: 204 KGHASYRSVRIHDELHKDLVWTYASPIAEIPQIAGLFSFYNERVEIFVDGKRQP 257 KG ASY +VR E+ D W Y SP+ E IAGL SF + + + V+G+ P Sbjct: 215 KGQASYYTVRGGGEVITDGAWHYPSPLPESAGIAGLVSFLGKGITVLVNGEPAP 268 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 52/104 (50%) Query: 19 VKTDRIAKKVSVRWRGEIIAESTDVLLLHERGQLPVYYFPAGDVRNDLLTASDRKSFFPL 78 V T R + +V V GE +A + + L E P +Y P DVR + L S + Sbjct: 155 VDTRRSSDQVEVLVGGETVARTARPVKLFETSLPPRWYIPLEDVRAEALEGSGTHTVCAY 214 Query: 79 KGEASYWSLQLGDEISENAAWSYEHPIPGREDIAGYYAFYWNAV 122 KG+ASY++++ G E+ + AW Y P+P IAG +F + Sbjct: 215 KGQASYYTVRGGGEVITDGAWHYPSPLPESAGIAGLVSFLGKGI 258 >Q0S041.1 Q0S041_RHOSR Putative uncharacterized protein Length = 265 Score = 187 bits (476), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 97/245 (39%), Positives = 138/245 (56%), Gaps = 3/245 (1%) Query: 11 EQRPQKLNVKTDRIAKKVSVRWRGEIIAESTDVLLLHERGQLPVYYFPAGDVRNDLLTAS 70 +Q + + +R K++ V + G +IA++T + L E+G LPVYY P DVR D L Sbjct: 12 QQSGENGRISIERTHKRIRVFFAGHVIADTTRAVYLFEKGHLPVYYIPRDDVRTDFLEPL 71 Query: 71 DRKSFFPLKGEASYWSLQLGDEISENAAWSYEHPIPGREDIAGYYAFYWNAVDGWXXXXX 130 D ++ P KG+A YW L + D +E + W Y+ P+ D++ Y AFYW+ +D W Sbjct: 72 DATTWCPWKGKARYWDLVVDDRRAERSVWGYDEPLKDSLDLSWYVAFYWHKMDAW-YEED 130 Query: 131 XXXXXXXXDPYKRIDALRSSRHIEIYLNGVKLADSTRPVILFETGVPVRYYLPEDDLNTA 190 DPY R+D L SSRH+E+++ +AD+TRP +LFET +PVRYY+P D+ + Sbjct: 131 QQVFVHPRDPYVRVDVLPSSRHVEVFIGDTLVADTTRPRLLFETSLPVRYYIPRIDVRSE 190 Query: 191 LLEFSDSKTACPYKGHASYRSVRIHDELH--KDLVWTYASPIAEIPQIAGLFSFYNERVE 248 SD+KT+CPYKG ASY S D+ +D W Y AE I SFY + Sbjct: 191 FFTGSDAKTSCPYKGTASYLSFTGSDDSDPVEDAAWYYPFTTAEASGIGDHVSFYPDSAR 250 Query: 249 IFVDG 253 I VDG Sbjct: 251 IVVDG 255 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 62/114 (54%) Query: 143 RIDALRSSRHIEIYLNGVKLADSTRPVILFETGVPVRYYLPEDDLNTALLEFSDSKTACP 202 RI R+ + I ++ G +AD+TR V LFE G YY+P DD+ T LE D+ T CP Sbjct: 19 RISIERTHKRIRVFFAGHVIADTTRAVYLFEKGHLPVYYIPRDDVRTDFLEPLDATTWCP 78 Query: 203 YKGHASYRSVRIHDELHKDLVWTYASPIAEIPQIAGLFSFYNERVEIFVDGKRQ 256 +KG A Y + + D + VW Y P+ + ++ +FY +++ + + +Q Sbjct: 79 WKGKARYWDLVVDDRRAERSVWGYDEPLKDSLDLSWYVAFYWHKMDAWYEEDQQ 132 >A4U8Q4.1 A4U8Q4_9BACT Putative uncharacterized protein Length = 288 Score = 186 bits (473), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 93/219 (42%), Positives = 130/219 (59%), Gaps = 3/219 (1%) Query: 44 LLLHERGQLPVYYFPAGDVRNDLLTASDRKSFFPLKGEASYWSLQLGDEISENAAWSYEH 103 +LL + G LPVYYFP DVR DLL A+ + P KG A+YW L G ++ A W Y Sbjct: 1 MLLRQHGFLPVYYFPEDDVRTDLLVATGYTTTSPYKGTANYWHLDTGSRVARFAVWRYLR 60 Query: 104 PIPGREDIAGYYAFYWNAVDGWXXXXXXXXXXXXXDPYKRIDALRSSRHIEIYLNGVKLA 163 P G D +G+Y F W+++D W DP+ R+DA+RS+R + + + G +A Sbjct: 61 PKGGSPDTSGHYGFDWHSMDAWWEEDERILVHAR-DPFLRVDAVRSARSVRVEIAGRTVA 119 Query: 164 DSTRPVILFETGVPVRYYLPEDDLNTALLEFSDSKTACPYKGHASYRSVRIHDELHKDLV 223 ++ RPV+LFETG+ R Y+PE+D+ + L E S + T CPYKG A Y VRI +KD+ Sbjct: 120 ETRRPVLLFETGLVTRCYVPEEDVQSGLFEPSATYTLCPYKGRARYHHVRIDGTRYKDVA 179 Query: 224 WTYASPIAEIPQIAGLFSFYNERVE--IFVDGKRQPKQA 260 W Y P+ + IAG +F+NER + IFVDGK P + Sbjct: 180 WQYVRPLPVVAAIAGHLAFWNERADTTIFVDGKPLPDRG 218 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/104 (34%), Positives = 51/104 (49%), Gaps = 1/104 (0%) Query: 17 LNVKTDRIAKKVSVRWRGEIIAESTDVLLLHERGQLPVYYFPAGDVRNDLLTASDRKSFF 76 L V R A+ V V G +AE+ +LL E G + Y P DV++ L S + Sbjct: 98 LRVDAVRSARSVRVEIAGRTVAETRRPVLLFETGLVTRCYVPEEDVQSGLFEPSATYTLC 157 Query: 77 PLKGEASYWSLQLGDEISENAAWSYEHPIPGREDIAGYYAFYWN 120 P KG A Y +++ ++ AW Y P+P IAG+ AF WN Sbjct: 158 PYKGRARYHHVRIDGTRYKDVAWQYVRPLPVVAAIAGHLAF-WN 200 >C1AX85.1 C1AX85_RHOOB Putative uncharacterized protein Length = 261 Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 96/230 (41%), Positives = 135/230 (58%), Gaps = 3/230 (1%) Query: 26 KKVSVRWRGEIIAESTDVLLLHERGQLPVYYFPAGDVRNDLLTASDRKSFFPLKGEASYW 85 K++ V + G ++A++T + L E+G LPVYY P DV DLL D + P KG+A YW Sbjct: 28 KRIRVFFGGRVVADTTRSVYLFEKGHLPVYYIPRDDVDFDLLEPVDATTTCPWKGKARYW 87 Query: 86 SLQLGDEISENAAWSYEHPIPGREDIAGYYAFYWNAVDGWXXXXXXXXXXXXXDPYKRID 145 L +GD +E + W Y+ + D++ Y AFYW+ +D W DPY R+D Sbjct: 88 DLVVGDRSAEQSVWGYDVKLDDSLDLSPYVAFYWHRMDAWYEEDQQVFVHAR-DPYVRVD 146 Query: 146 ALRSSRHIEIYLNGVKLADSTRPVILFETGVPVRYYLPEDDLNTALLEFSDSKTACPYKG 205 L SSRH+E+Y+ +AD+TRP +LFET +PVRYY+P D+ + SD++T+CPYKG Sbjct: 147 VLPSSRHVEVYIGDTLVADTTRPRLLFETSLPVRYYVPRIDVRSEFFAASDTRTSCPYKG 206 Query: 206 HASYRSVRIHD--ELHKDLVWTYASPIAEIPQIAGLFSFYNERVEIFVDG 253 ASY S + E +D+ W Y AE I SFY +RV+I VDG Sbjct: 207 TASYLSFTGSENTEPVEDVAWFYPFTTAEASGIDDHVSFYPDRVKIVVDG 256 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 37/114 (32%), Positives = 61/114 (53%) Query: 143 RIDALRSSRHIEIYLNGVKLADSTRPVILFETGVPVRYYLPEDDLNTALLEFSDSKTACP 202 RI + + I ++ G +AD+TR V LFE G YY+P DD++ LLE D+ T CP Sbjct: 20 RISIEPNHKRIRVFFGGRVVADTTRSVYLFEKGHLPVYYIPRDDVDFDLLEPVDATTTCP 79 Query: 203 YKGHASYRSVRIHDELHKDLVWTYASPIAEIPQIAGLFSFYNERVEIFVDGKRQ 256 +KG A Y + + D + VW Y + + ++ +FY R++ + + +Q Sbjct: 80 WKGKARYWDLVVGDRSAEQSVWGYDVKLDDSLDLSPYVAFYWHRMDAWYEEDQQ 133 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.137 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,636,175,149 Number of extensions: 66975432 Number of successful extensions: 131022 Number of sequences better than 1.0e-05: 399 Number of HSP's gapped: 130813 Number of HSP's successfully gapped: 662 Length of query: 274 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 140 Effective length of database: 1,798,280,193 Effective search space: 251759227020 Effective search space used: 251759227020 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)