BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0520.0023.p (263 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D8U7.1 B1D8U7_9BACL Putative uncharacterized protein 362 2e-98 Q2B332.1 Q2B332_9BACI Putative uncharacterized protein 315 3e-84 A6CLT7.1 A6CLT7_9BACI Putative uncharacterized protein 315 3e-84 C5D5V1.1 C5D5V1_9BACI Putative uncharacterized protein 310 9e-83 B7GIK3.1 B7GIK3_ANOFW ABC-type uncharacterized transport system,... 305 2e-81 >B1D8U7.1 B1D8U7_9BACL Putative uncharacterized protein Length = 263 Score = 362 bits (928), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 164/261 (62%), Positives = 214/261 (81%), Gaps = 2/261 (0%) Query: 5 YLGLLFEYLKNYMKTRLTYRADFWVEVVSDLLFQATNFIFILVIFMHTESLGGWSQNEVV 64 Y L +EY+KNY KTRLTYRADFWVEV+SD++FQ N IFILV+F HT SLGGW+++EVV Sbjct: 3 YAVLFWEYIKNYAKTRLTYRADFWVEVLSDMMFQGMNLIFILVVFQHTPSLGGWTESEVV 62 Query: 65 FVYGFFMVPFGVFSCFVNMWGFSERYIVKGEMDRILTRPAHNLFQIFLENVDPPALVGSV 124 FVYGFFM+P+G+FS F MW FSERYIVKGEMDRILTRPAHNLFQ+ LENVDPP+L+GS Sbjct: 63 FVYGFFMIPYGIFSTFFGMWNFSERYIVKGEMDRILTRPAHNLFQVLLENVDPPSLIGSA 122 Query: 125 IGLIIMGISGSNLGLPFEWWTIPMVIILTLSAVAIYTGIYTTLTSLSFYSDAPTGILPLM 184 +G +IM + ++LGL F W+ + ++++ L AV +Y GIYT L+++SF+SDAPTGI+PL+ Sbjct: 123 VGAVIMAVCWNDLGLAFHWYYVLIMLLFVLGAVLVYAGIYTALSAISFFSDAPTGIVPLI 182 Query: 185 YNIQNYGRYPVTIYNRAIQVLLTWIIPFAFVGIYPAAMFLHR--EEMQGMALLTPVVGAI 242 YN+QNYGRYPV IYN+ I+ +LTW++PFAFVG+ PA+ FL + +++ +A TPV+G I Sbjct: 183 YNVQNYGRYPVNIYNKTIRFVLTWLLPFAFVGVIPASYFLEKKADDLSQLAWFTPVMGVI 242 Query: 243 FLGIGLLSWNYGVKRYKGAGS 263 +GL WN+GVKRY+GAGS Sbjct: 243 VFALGLAVWNHGVKRYRGAGS 263 >Q2B332.1 Q2B332_9BACI Putative uncharacterized protein Length = 261 Score = 315 bits (807), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 146/261 (55%), Positives = 196/261 (75%) Query: 3 LYYLGLLFEYLKNYMKTRLTYRADFWVEVVSDLLFQATNFIFILVIFMHTESLGGWSQNE 62 ++Y+ + F+Y+ YMKTRL YRAD VEVVSDLLFQA N IFILV+F HT L GW+++E Sbjct: 1 MFYISIFFQYVSQYMKTRLEYRADLAVEVVSDLLFQAVNLIFILVVFGHTSYLSGWNRDE 60 Query: 63 VVFVYGFFMVPFGVFSCFVNMWGFSERYIVKGEMDRILTRPAHNLFQIFLENVDPPALVG 122 ++F+YGFF+VP+ +FS F N+W F+ERYIVKGE DRILTRP H+LFQI LE ++ +L G Sbjct: 61 IIFIYGFFLVPYALFSSFFNIWDFNERYIVKGEFDRILTRPVHSLFQIVLERMELESLFG 120 Query: 123 SVIGLIIMGISGSNLGLPFEWWTIPMVIILTLSAVAIYTGIYTTLTSLSFYSDAPTGILP 182 +V GL+IM +G LGL W+ + I+L L V +Y GI+ + +SF++DA T I+P Sbjct: 121 AVTGLVIMFYAGEQLGLSISWYDPFLFILLVLGGVMVYAGIFVLIACISFWADARTSIMP 180 Query: 183 LMYNIQNYGRYPVTIYNRAIQVLLTWIIPFAFVGIYPAAMFLHREEMQGMALLTPVVGAI 242 +MYNI NYGRYPV IYN AI+ +LTWI+PFAFVG+YPAA FL + E + LTPV+G + Sbjct: 181 MMYNIGNYGRYPVDIYNGAIRFVLTWILPFAFVGVYPAAYFLGKHEWLAYSFLTPVIGLV 240 Query: 243 FLGIGLLSWNYGVKRYKGAGS 263 F + ++ WN GVK+Y+GAG+ Sbjct: 241 FFCLSIIVWNQGVKKYRGAGN 261 >A6CLT7.1 A6CLT7_9BACI Putative uncharacterized protein Length = 261 Score = 315 bits (806), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 145/261 (55%), Positives = 194/261 (74%) Query: 3 LYYLGLLFEYLKNYMKTRLTYRADFWVEVVSDLLFQATNFIFILVIFMHTESLGGWSQNE 62 ++YL + F Y+ YMKTRL YR D VE++SDLLFQ N +FILV+F HT+ L GW+++E Sbjct: 1 MFYLSMFFRYVSQYMKTRLQYRTDLVVEILSDLLFQGVNLVFILVVFGHTQFLSGWNRDE 60 Query: 63 VVFVYGFFMVPFGVFSCFVNMWGFSERYIVKGEMDRILTRPAHNLFQIFLENVDPPALVG 122 ++F+YGFF+VPF +FS F N+W F+ERYIVKGEMDRILTRP H+LFQ+ LE ++ +L G Sbjct: 61 IIFIYGFFLVPFALFSTFFNIWDFNERYIVKGEMDRILTRPIHSLFQVILERMELESLFG 120 Query: 123 SVIGLIIMGISGSNLGLPFEWWTIPMVIILTLSAVAIYTGIYTTLTSLSFYSDAPTGILP 182 GL IM +G+NLGL EW + ++ + +Y GI+ +L S+ F+SDA T I+P Sbjct: 121 VFTGLFIMFYAGNNLGLSIEWMDPILFVLFVIGGALVYAGIFISLASIGFWSDAKTSIMP 180 Query: 183 LMYNIQNYGRYPVTIYNRAIQVLLTWIIPFAFVGIYPAAMFLHREEMQGMALLTPVVGAI 242 +MYNI NYGRYPV IYN AI+ +LTWI+PFAFVG+YPAA FL +EE G + LTP++G Sbjct: 181 MMYNIGNYGRYPVDIYNNAIRFVLTWILPFAFVGVYPAAYFLGKEEWYGFSYLTPLIGTA 240 Query: 243 FLGIGLLSWNYGVKRYKGAGS 263 F G+ + WN GVKRY+GAG+ Sbjct: 241 FFGLSIYLWNEGVKRYRGAGN 261 >C5D5V1.1 C5D5V1_9BACI Putative uncharacterized protein Length = 261 Score = 310 bits (794), Expect = 9e-83, Method: Compositional matrix adjust. Identities = 140/261 (53%), Positives = 195/261 (74%) Query: 3 LYYLGLLFEYLKNYMKTRLTYRADFWVEVVSDLLFQATNFIFILVIFMHTESLGGWSQNE 62 ++Y+ + F+Y+ YMKT+L YRAD VE +SDL+ QA N +F+LV+F HT L GW++ E Sbjct: 1 MFYVSIFFQYMAQYMKTKLQYRADLLVEFISDLMSQAVNLVFLLVVFGHTTLLHGWTREE 60 Query: 63 VVFVYGFFMVPFGVFSCFVNMWGFSERYIVKGEMDRILTRPAHNLFQIFLENVDPPALVG 122 ++F+YGFF+VP+ VF F N+W F+ERYIV+GEMDR+LTRP H+LFQI LE ++ +L+G Sbjct: 61 ILFIYGFFLVPYAVFGAFFNIWDFNERYIVRGEMDRVLTRPVHSLFQIILERMELESLLG 120 Query: 123 SVIGLIIMGISGSNLGLPFEWWTIPMVIILTLSAVAIYTGIYTTLTSLSFYSDAPTGILP 182 V G+IIM +G+ L L W+ I M I+L L IY G++ +L ++SF++DA T I+P Sbjct: 121 GVTGMIIMVYAGARLHLSLHWYDIFMFILLVLGGALIYAGVFVSLATISFWADARTSIIP 180 Query: 183 LMYNIQNYGRYPVTIYNRAIQVLLTWIIPFAFVGIYPAAMFLHREEMQGMALLTPVVGAI 242 +MYNI NYGRYP+ IY+R I+ +LTWI+PFAFVG+YPA+ FL ++E G A TPV+G I Sbjct: 181 MMYNISNYGRYPIDIYHRVIRYILTWILPFAFVGVYPASYFLGKKEWYGYAFFTPVMGII 240 Query: 243 FLGIGLLSWNYGVKRYKGAGS 263 F I + WN GVKRY+GAG+ Sbjct: 241 FFTIAVFLWNAGVKRYRGAGN 261 >B7GIK3.1 B7GIK3_ANOFW ABC-type uncharacterized transport system, permease component Length = 261 Score = 305 bits (782), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 135/261 (51%), Positives = 194/261 (74%) Query: 3 LYYLGLLFEYLKNYMKTRLTYRADFWVEVVSDLLFQATNFIFILVIFMHTESLGGWSQNE 62 ++Y+ + F+Y+ Y+KT+L YR D VE +SDL+FQ N IFILV+F HT+ L GW+++E Sbjct: 1 MFYMSIFFQYMSQYIKTKLQYRTDLVVEFLSDLMFQGVNLIFILVVFGHTQLLNGWTRDE 60 Query: 63 VVFVYGFFMVPFGVFSCFVNMWGFSERYIVKGEMDRILTRPAHNLFQIFLENVDPPALVG 122 ++F+YGFF++PF +F+ F N+W F+ERYIV+GEMDR+LTRP H+LFQI LE ++ +L+G Sbjct: 61 IIFIYGFFLIPFALFASFFNIWDFNERYIVRGEMDRVLTRPVHSLFQIVLERMELESLLG 120 Query: 123 SVIGLIIMGISGSNLGLPFEWWTIPMVIILTLSAVAIYTGIYTTLTSLSFYSDAPTGILP 182 + G I+MG + S L + F W+ + ++ L +Y GI+ +L S+SF+SDA + I+P Sbjct: 121 GITGFIVMGYAASRLDITFHWYDAILFVLFVLGGTFVYAGIFISLASISFWSDARSSIMP 180 Query: 183 LMYNIQNYGRYPVTIYNRAIQVLLTWIIPFAFVGIYPAAMFLHREEMQGMALLTPVVGAI 242 +MYNI NYGRYPV IYNR I+ +LTWI+PFAFVG+YP+A FL + E + LTPV+G + Sbjct: 181 MMYNIGNYGRYPVDIYNRIIRYILTWILPFAFVGVYPSAYFLRKTEWYMYSFLTPVMGIV 240 Query: 243 FLGIGLLSWNYGVKRYKGAGS 263 + LL WN GVKRY+GAG+ Sbjct: 241 CFTLSLLLWNAGVKRYRGAGN 261 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.145 0.462 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,603,056,137 Number of extensions: 68149830 Number of successful extensions: 225361 Number of sequences better than 1.0e-05: 364 Number of HSP's gapped: 224866 Number of HSP's successfully gapped: 364 Length of query: 263 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 130 Effective length of database: 1,807,701,208 Effective search space: 235001157040 Effective search space used: 235001157040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)