BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0520.0019.p
         (111 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

O52854.1 O52854_BACSU Orf1                                            156   5e-37
O32238.2 O32238_BACSU Putative transcriptional regulator              155   2e-36
Q93GG6.1 Q93GG6_BACSU Putative uncharacterized protein                152   6e-36
A7Z8V1.1 A7Z8V1_BACA2 YvaP                                            152   1e-35
A3KLC7.1 A3KLC7_BACAM Putative uncharacterized protein yvaP           152   1e-35

>O52854.1 O52854_BACSU Orf1
          Length = 108

 Score =  156 bits (395), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 74/103 (71%), Positives = 87/103 (84%)

Query: 4   MDDFEMCPRFEKAVDMLSKRWVALIVFVLMKGPRRFGEIESCLSNLSGKVLSDRLKEMEN 63
           M+  EMCPRFEKAVD+LSKRWVALIVF L+ G +RF EIE+ L NLSG+VLS+RLKE+E 
Sbjct: 1   MNQSEMCPRFEKAVDILSKRWVALIVFQLLNGSQRFSEIEAALPNLSGRVLSERLKELEL 60

Query: 64  EGIIERTVYPEMPVRIEYSLTSKGNALAPILGEIGNWSTDWIE 106
           EG+++R V PE PVRIEYSLT KG ALAPILGEI  W+TDWI+
Sbjct: 61  EGVVKRDVIPETPVRIEYSLTDKGKALAPILGEISKWATDWID 103


>O32238.2 O32238_BACSU Putative transcriptional regulator
          Length = 108

 Score =  155 bits (391), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/103 (70%), Positives = 87/103 (84%)

Query: 4   MDDFEMCPRFEKAVDMLSKRWVALIVFVLMKGPRRFGEIESCLSNLSGKVLSDRLKEMEN 63
           M+  EMCPRFEKAVD+LSKRWVALIVF L+ G +RF EIE+ L NLSG+VLS+RLKE+E 
Sbjct: 1   MNQSEMCPRFEKAVDILSKRWVALIVFQLLNGSQRFSEIEAALPNLSGRVLSERLKELEL 60

Query: 64  EGIIERTVYPEMPVRIEYSLTSKGNALAPILGEIGNWSTDWIE 106
           EG+++R V PE PVRIEYSLT KG ALAPILGEI  W+T+WI+
Sbjct: 61  EGVVKRDVIPETPVRIEYSLTDKGKALAPILGEISKWATEWID 103


>Q93GG6.1 Q93GG6_BACSU Putative uncharacterized protein
          Length = 106

 Score =  152 bits (385), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 73/103 (70%), Positives = 86/103 (83%)

Query: 4   MDDFEMCPRFEKAVDMLSKRWVALIVFVLMKGPRRFGEIESCLSNLSGKVLSDRLKEMEN 63
           M+  EMCPRFEKAVD+LSKRWVALIVF L+ G +RF EIE+ L NLSG+VLS+RLKE+E 
Sbjct: 1   MNQSEMCPRFEKAVDILSKRWVALIVFQLLNGQQRFSEIEAALPNLSGRVLSERLKELET 60

Query: 64  EGIIERTVYPEMPVRIEYSLTSKGNALAPILGEIGNWSTDWIE 106
           EG+I+R V PE PVRIEYSLT KG ALAPIL EI  W+T+WI+
Sbjct: 61  EGVIKRDVIPETPVRIEYSLTEKGCALAPILEEISKWATEWID 103


>A7Z8V1.1 A7Z8V1_BACA2 YvaP
          Length = 105

 Score =  152 bits (383), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 73/103 (70%), Positives = 85/103 (82%)

Query: 4   MDDFEMCPRFEKAVDMLSKRWVALIVFVLMKGPRRFGEIESCLSNLSGKVLSDRLKEMEN 63
           M+  EMCPRFEKAVD+LSKRWVALIVF L+ G +RF EIE+ L NLSG+VLS+RLKE+E 
Sbjct: 1   MNQSEMCPRFEKAVDILSKRWVALIVFQLLNGQQRFSEIEAALPNLSGRVLSERLKELET 60

Query: 64  EGIIERTVYPEMPVRIEYSLTSKGNALAPILGEIGNWSTDWIE 106
           EG+I+R V PE PVRIEYSLT KG ALAPIL EI  WS+ WI+
Sbjct: 61  EGVIKRDVIPETPVRIEYSLTEKGCALAPILEEISKWSSTWID 103


>A3KLC7.1 A3KLC7_BACAM Putative uncharacterized protein yvaP
          Length = 105

 Score =  152 bits (383), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 73/103 (70%), Positives = 85/103 (82%)

Query: 4   MDDFEMCPRFEKAVDMLSKRWVALIVFVLMKGPRRFGEIESCLSNLSGKVLSDRLKEMEN 63
           M+  EMCPRFEKAVD+LSKRWVALIVF L+ G +RF EIE+ L NLSG+VLS+RLKE+E 
Sbjct: 1   MNQSEMCPRFEKAVDILSKRWVALIVFQLLNGQQRFSEIEAALPNLSGRVLSERLKELET 60

Query: 64  EGIIERTVYPEMPVRIEYSLTSKGNALAPILGEIGNWSTDWIE 106
           EG+I+R V PE PVRIEYSLT KG ALAPIL EI  WS+ WI+
Sbjct: 61  EGVIKRDVIPETPVRIEYSLTEKGCALAPILEEISKWSSTWID 103


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.321    0.139    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 688,660,775
Number of extensions: 25115462
Number of successful extensions: 71437
Number of sequences better than 1.0e-05: 2636
Number of HSP's gapped: 71157
Number of HSP's successfully gapped: 2641
Length of query: 111
Length of database: 3,060,696,203
Length adjustment: 78
Effective length of query: 33
Effective length of database: 2,325,857,033
Effective search space: 76753282089
Effective search space used: 76753282089
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)