BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0520.0016.p (271 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DKN5.1 B1DKN5_9BACL ABC transporter related 328 2e-88 C1XST7.1 C1XST7_9DEIN ABC-type multidrug transport system, ATPas... 265 4e-69 C4CPZ7.1 C4CPZ7_9CHLR ABC-type multidrug transport system, ATPas... 262 3e-68 B7R6A0.1 B7R6A0_9THEO ABC transporter, ATP-binding protein 256 2e-66 Q8R7K3.1 Q8R7K3_THETN ABC-type multidrug transport system, ATPas... 254 5e-66 >B1DKN5.1 B1DKN5_9BACL ABC transporter related Length = 320 Score = 328 bits (842), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 157/241 (65%), Positives = 189/241 (78%) Query: 5 AIEAQLLTKEYSNGRGCRDVSITVEKGEAFGFLGPNGAGKSTIVKMLAGLIRPTSGSAAL 64 AIE LTK Y NGRGC DV++ + GEAFGFLGPNGAGKSTIVKML GL PT G A L Sbjct: 4 AIETFGLTKNYGNGRGCHDVTLRIPAGEAFGFLGPNGAGKSTIVKMLVGLTTPTEGKALL 63 Query: 65 FGHPVGTLAAKAKIGYLPELYRYQEWLTGEEVVRLHARLCGIDKSVADRRIPELLKEVGI 124 FG P G++ A+ +IGYLPEL+RY WL+GEE + HA+LCG+ + A RI LL EVGI Sbjct: 64 FGQPAGSVEARRRIGYLPELFRYPGWLSGEEAMHFHAKLCGMKGAEAKSRINRLLDEVGI 123 Query: 125 GLRGRDRVKHYSKGMQQRLGLACALVNEPELVFLDEPSSALDPIGRMEVRTILERLKQRG 184 G RG+DR+K YSKGMQQRLGLACAL+ +P++VFLDEP+SALDP+GR EVR +L+RL++ G Sbjct: 124 GQRGKDRIKGYSKGMQQRLGLACALLADPDIVFLDEPASALDPVGRHEVRELLQRLRREG 183 Query: 185 ITIFLNSHLLEDVEVLCDRMALLNNGEILRHGKVTDILNKRTSWHFKVGGYSPFLLSWLI 244 TIFLNSHLLEDVE+LCD +ALLNNG IL G+V+D+L T W F+VGG +P LL WL Sbjct: 184 KTIFLNSHLLEDVELLCDHVALLNNGRILADGRVSDVLRASTRWRFRVGGMTPELLDWLR 243 Query: 245 E 245 E Sbjct: 244 E 244 >C1XST7.1 C1XST7_9DEIN ABC-type multidrug transport system, ATPase component Length = 302 Score = 265 bits (676), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 129/239 (53%), Positives = 172/239 (71%) Query: 5 AIEAQLLTKEYSNGRGCRDVSITVEKGEAFGFLGPNGAGKSTIVKMLAGLIRPTSGSAAL 64 AIEA L K Y +S+ V GE FGFLGPNGAGK+T VKML GL+ PTSG A + Sbjct: 3 AIEASGLRKVYRGKAAVEHLSLEVAPGEVFGFLGPNGAGKTTTVKMLLGLVHPTSGIARI 62 Query: 65 FGHPVGTLAAKAKIGYLPELYRYQEWLTGEEVVRLHARLCGIDKSVADRRIPELLKEVGI 124 G P+G L KAKIG+LPEL+R+ +W+TG+E +R H RL G+D +RRIPE+L+ VG+ Sbjct: 63 LGKPLGDLETKAKIGFLPELFRFHDWMTGKEFLRFHGRLYGMDGGDLERRIPEVLELVGL 122 Query: 125 GLRGRDRVKHYSKGMQQRLGLACALVNEPELVFLDEPSSALDPIGRMEVRTILERLKQRG 184 R +R++ YSKGMQQR+GLA A++N P LVFLDEP+SALDPIGR EVR I+ LK++G Sbjct: 123 LGRENERIRGYSKGMQQRIGLAQAILNRPRLVFLDEPTSALDPIGRREVREIIHHLKEQG 182 Query: 185 ITIFLNSHLLEDVEVLCDRMALLNNGEILRHGKVTDILNKRTSWHFKVGGYSPFLLSWL 243 T+FLNSHLL +VE+ CDR+A++N G+++R G + ++LN R ++ S LL+ L Sbjct: 183 TTVFLNSHLLSEVELTCDRVAIVNKGQVVRSGTLDELLNARLEVEIRLDVLSSELLTQL 241 >C4CPZ7.1 C4CPZ7_9CHLR ABC-type multidrug transport system, ATPase component Length = 305 Score = 262 bits (669), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 126/240 (52%), Positives = 174/240 (72%) Query: 11 LTKEYSNGRGCRDVSITVEKGEAFGFLGPNGAGKSTIVKMLAGLIRPTSGSAALFGHPVG 70 L K Y D+++ VE+GE FGFLGPNGAGK+T VKML GL+RPTSG+A L G P+G Sbjct: 6 LRKVYGERVAVEDLTLRVEEGEVFGFLGPNGAGKTTSVKMLMGLVRPTSGTARLLGRPLG 65 Query: 71 TLAAKAKIGYLPELYRYQEWLTGEEVVRLHARLCGIDKSVADRRIPELLKEVGIGLRGRD 130 AA+AKIG+LPE++R+ +WLTGEE++ +H +L G+ ++ RRIPE+L+ VG+ R Sbjct: 66 DRAARAKIGFLPEMFRFHDWLTGEELLDIHGQLYGMSRAQRQRRIPEVLELVGLSHAARQ 125 Query: 131 RVKHYSKGMQQRLGLACALVNEPELVFLDEPSSALDPIGRMEVRTILERLKQRGITIFLN 190 RV+ YSKGMQQR+GLA AL+NEP LVFLDEP+SALDPIGR +VR I+ RL+ G+T+FLN Sbjct: 126 RVRTYSKGMQQRIGLAQALLNEPRLVFLDEPTSALDPIGRRDVRDIILRLRAAGMTVFLN 185 Query: 191 SHLLEDVEVLCDRMALLNNGEILRHGKVTDILNKRTSWHFKVGGYSPFLLSWLIELTGLQ 250 SHLL +VE + DR+A++N+G + G + D+L + + ++ P LL L L ++ Sbjct: 186 SHLLSEVESVSDRVAIINHGRVAAIGPMADLLRRDLTVELRLSAVDPELLDDLGRLVHIE 245 >B7R6A0.1 B7R6A0_9THEO ABC transporter, ATP-binding protein Length = 300 Score = 256 bits (653), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 117/243 (48%), Positives = 178/243 (73%), Gaps = 2/243 (0%) Query: 5 AIEAQLLTKEYSNGRGCRDVSITVEKGEAFGFLGPNGAGKSTIVKMLAGLIRPTSGSAAL 64 +E Q LTK+++ G ++V+++VEKG+ FGFLGPNGAGKST VK + GL+ PTSG A + Sbjct: 2 VLETQNLTKQFNGKGGFKEVTLSVEKGQVFGFLGPNGAGKSTFVKTMVGLLHPTSGFAWI 61 Query: 65 FGHPVGTLAAKAKIGYLPELYRYQEWLTGEEVVRLHARLCGIDKSVADRRIPELLKEVGI 124 G P+GT+ ++ K+G+LPE +RY +W+TG+E++ HA L I ++I ELL+ V + Sbjct: 62 LGKPIGTVESREKVGFLPENFRYHDWMTGKELLSFHAELYKIKN--PGKKIDELLELVKL 119 Query: 125 GLRGRDRVKHYSKGMQQRLGLACALVNEPELVFLDEPSSALDPIGRMEVRTILERLKQRG 184 +K+YSKGMQQR+G+A AL+N+PE+VFLDEP+SALDP+GR+EVR I+++LK +G Sbjct: 120 KGHESKLIKNYSKGMQQRIGIAIALLNDPEIVFLDEPTSALDPVGRIEVREIIKQLKSQG 179 Query: 185 ITIFLNSHLLEDVEVLCDRMALLNNGEILRHGKVTDILNKRTSWHFKVGGYSPFLLSWLI 244 T+FLNSHLL +VE++CD +A++N+G ++ GK+ D+L + T + Y+P L+ + Sbjct: 180 KTVFLNSHLLSEVEMVCDEVAIINHGRVIAQGKLDDLLKEHTHVEMVITDYTPELIEKIS 239 Query: 245 ELT 247 L+ Sbjct: 240 RLS 242 >Q8R7K3.1 Q8R7K3_THETN ABC-type multidrug transport system, ATPase component Length = 300 Score = 254 bits (649), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 116/243 (47%), Positives = 178/243 (73%), Gaps = 2/243 (0%) Query: 5 AIEAQLLTKEYSNGRGCRDVSITVEKGEAFGFLGPNGAGKSTIVKMLAGLIRPTSGSAAL 64 +E Q LTK+++ G ++V+++VEKG+ FGFLGPNGAGKST VK + GL+ PTSG A + Sbjct: 2 VLETQNLTKQFNGKGGFKEVTLSVEKGQVFGFLGPNGAGKSTFVKTMVGLLHPTSGFAWI 61 Query: 65 FGHPVGTLAAKAKIGYLPELYRYQEWLTGEEVVRLHARLCGIDKSVADRRIPELLKEVGI 124 G P+GT+ ++ K+G+LPE +RY +W+TG+E++ HA L I ++I ELL+ V + Sbjct: 62 LGKPIGTVESREKVGFLPENFRYHDWMTGKELLTFHAELYKIKN--PGKKIDELLELVKL 119 Query: 125 GLRGRDRVKHYSKGMQQRLGLACALVNEPELVFLDEPSSALDPIGRMEVRTILERLKQRG 184 +K+YSKGMQQR+G+A AL+N+PE+VFLDEP+SALDP+GR++VR I+++LK +G Sbjct: 120 KGHENKLIKNYSKGMQQRIGIAIALLNDPEIVFLDEPTSALDPVGRIDVREIIKQLKSQG 179 Query: 185 ITIFLNSHLLEDVEVLCDRMALLNNGEILRHGKVTDILNKRTSWHFKVGGYSPFLLSWLI 244 T+FLNSHLL +VE++CD +A++N+G ++ GK+ D+L + T + Y+P L+ + Sbjct: 180 KTVFLNSHLLSEVEMVCDEVAIINHGRVIAQGKLDDLLKEHTHVEMVITDYTPELIEKIS 239 Query: 245 ELT 247 L+ Sbjct: 240 RLS 242 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.140 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,615,575,367 Number of extensions: 68667644 Number of successful extensions: 486407 Number of sequences better than 1.0e-05: 84984 Number of HSP's gapped: 393035 Number of HSP's successfully gapped: 91132 Length of query: 271 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 138 Effective length of database: 1,807,701,208 Effective search space: 249462766704 Effective search space used: 249462766704 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)