BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0520.0012.p
         (104 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1DFQ8.1 B1DFQ8_9BACL Putative uncharacterized protein                 85   2e-15

>B1DFQ8.1 B1DFQ8_9BACL Putative uncharacterized protein
          Length = 106

 Score = 85.1 bits (209), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/98 (42%), Positives = 64/98 (65%)

Query: 3   VDDYLDLYNYAKAINDGQWQADIIESLKNHKETAAEQQRMDSVKELWNRFDEINLLLMEL 62
           ++DYLDLYNYAK I D +WQ DI  SL   KE A++Q       ELW +FD IN  +++L
Sbjct: 9   INDYLDLYNYAKQIGDQEWQRDISRSLAGWKEQASQQALSMKAAELWRKFDVINRKMLDL 68

Query: 63  FDKLRNQEEDPESDRWKERIWELKLERITLAKQIQERY 100
           + +LRN ++  +    +E +W LKL+R+ L++Q +E +
Sbjct: 69  YRQLRNSDDSSDLKTLREEVWLLKLQRVELSRQFKESF 106


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.133    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 626,458,923
Number of extensions: 21817735
Number of successful extensions: 103156
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 103159
Number of HSP's successfully gapped: 2
Length of query: 104
Length of database: 3,060,696,203
Length adjustment: 72
Effective length of query: 32
Effective length of database: 2,382,383,123
Effective search space: 76236259936
Effective search space used: 76236259936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)