BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0520.0004.p
         (50 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KIS2.1 B3KIS2_9BACI Sporulation protein, yteA family                 65   1e-09

>B3KIS2.1 B3KIS2_9BACI Sporulation protein, yteA family
          Length = 187

 Score = 65.5 bits (158), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/46 (69%), Positives = 37/46 (80%), Gaps = 2/46 (4%)

Query: 1   MTAPPAGAGRNRQQHSGRFDDAGAWDAVEDYGSASSPVTS--PGQD 44
           MT PP+GAG NRQ   G+FDDAGAWDAVEDYG+++SP  S  PGQD
Sbjct: 136 MTPPPSGAGVNRQAADGKFDDAGAWDAVEDYGTSTSPGMSIKPGQD 181


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.306    0.125    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 372,743,584
Number of extensions: 11862733
Number of successful extensions: 13780
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 13780
Number of HSP's successfully gapped: 1
Length of query: 50
Length of database: 3,060,696,203
Length adjustment: 23
Effective length of query: 27
Effective length of database: 2,844,012,858
Effective search space: 76788347166
Effective search space used: 76788347166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 126 (53.1 bits)