BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0520.0003.p
         (119 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KIR8.1 B3KIR8_9BACI Replication terminator protein                  221   1e-56
Q5KZ66.1 Q5KZ66_GEOKA Replication terminator protein                  126   6e-28
C3IZL0.1 C3IZL0_9BACI Replication terminator protein                  126   6e-28
B7Y6S4.1 B7Y6S4_9BACI Replication terminator protein                  126   6e-28
B7GI19.1 B7GI19_ANOFW Transcriptional regulator PadR-like family      125   1e-27

>B3KIR8.1 B3KIR8_9BACI Replication terminator protein
          Length = 119

 Score =  221 bits (564), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 103/119 (86%), Positives = 115/119 (96%)

Query: 1   MAFMIAQRAFIKVYLITMVEQHKGYGYQMLEDLRRDFKAHGYSPPQSEIYRALHELVQQG 60
           MAFMIAQRAFIKVYLITMVEQ +GYGYQMLE+LR++FK+HGYSPPQSEIYRALHELVQ+G
Sbjct: 1   MAFMIAQRAFIKVYLITMVEQQRGYGYQMLEELRQEFKSHGYSPPQSEIYRALHELVQEG 60

Query: 61  ILYRTKQLKGNDPKVDFQEIVLYHFTADGEEKARLYKKQVKTDLDRCLGILNKAVADNF 119
           +LYRTKQLKGNDP+VDFQEIVLYHFT +G EKA+LYKKQVKTDLDRCLGIL+KAV DN+
Sbjct: 61  VLYRTKQLKGNDPRVDFQEIVLYHFTDEGAEKAKLYKKQVKTDLDRCLGILHKAVNDNY 119


>Q5KZ66.1 Q5KZ66_GEOKA Replication terminator protein
          Length = 124

 Score =  126 bits (316), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 58/118 (49%), Positives = 86/118 (72%), Gaps = 3/118 (2%)

Query: 2   AFMIAQRAFIKVYLITMVEQHKGYGYQMLEDLRRDFKAHGYSPPQSEIYRALHELVQQGI 61
            F++ QRAF+K+YLIT+ EQ + YG ++L+ LR++FK  GY P  SE+Y+ALH+L++ GI
Sbjct: 9   GFLLKQRAFLKLYLITLTEQERLYGLKLLDVLRQEFKPFGYRPNHSEVYKALHDLIEDGI 68

Query: 62  LYRTKQLKGNDPKVDFQEIVLYHFTADGEEKARLYKKQVKTDLDRCLGILNKAVADNF 119
           L   KQ+K     + +QE+V Y F   G+EKA+LYK+Q+K +LDRC  ++ KA+ DNF
Sbjct: 69  L---KQVKQKKEGMKYQEVVYYRFAEGGQEKAKLYKRQLKAELDRCAALIRKAIEDNF 123


>C3IZL0.1 C3IZL0_9BACI Replication terminator protein
          Length = 124

 Score =  126 bits (316), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 58/118 (49%), Positives = 86/118 (72%), Gaps = 3/118 (2%)

Query: 2   AFMIAQRAFIKVYLITMVEQHKGYGYQMLEDLRRDFKAHGYSPPQSEIYRALHELVQQGI 61
            F++ QRAF+K+YLIT+ EQ + YG ++L+ LR++FK  GY P  SE+Y+ALH+L++ GI
Sbjct: 9   GFLLKQRAFLKLYLITLTEQERLYGLKLLDVLRQEFKPFGYRPNHSEVYKALHDLIEDGI 68

Query: 62  LYRTKQLKGNDPKVDFQEIVLYHFTADGEEKARLYKKQVKTDLDRCLGILNKAVADNF 119
           L   KQ+K     + +QE+V Y F   G+EKA+LYK+Q+K +LDRC  ++ KA+ DNF
Sbjct: 69  L---KQVKQKKEGMKYQEVVYYRFAEGGQEKAKLYKRQLKAELDRCAALIRKAIEDNF 123


>B7Y6S4.1 B7Y6S4_9BACI Replication terminator protein
          Length = 124

 Score =  126 bits (316), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 58/118 (49%), Positives = 86/118 (72%), Gaps = 3/118 (2%)

Query: 2   AFMIAQRAFIKVYLITMVEQHKGYGYQMLEDLRRDFKAHGYSPPQSEIYRALHELVQQGI 61
            F++ QRAF+K+YLIT+ EQ + YG ++L+ LR++FK  GY P  SE+Y+ALH+L++ GI
Sbjct: 9   GFLLKQRAFLKLYLITLTEQERLYGLKLLDVLRQEFKPFGYRPNHSEVYKALHDLIEDGI 68

Query: 62  LYRTKQLKGNDPKVDFQEIVLYHFTADGEEKARLYKKQVKTDLDRCLGILNKAVADNF 119
           L   KQ+K     + +QE+V Y F   G+EKA+LYK+Q+K +LDRC  ++ KA+ DNF
Sbjct: 69  L---KQVKQKKEGMKYQEVVYYRFAEGGQEKAKLYKRQLKAELDRCAALIRKAIEDNF 123


>B7GI19.1 B7GI19_ANOFW Transcriptional regulator PadR-like family
          Length = 133

 Score =  125 bits (314), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 58/118 (49%), Positives = 87/118 (73%), Gaps = 3/118 (2%)

Query: 2   AFMIAQRAFIKVYLITMVEQHKGYGYQMLEDLRRDFKAHGYSPPQSEIYRALHELVQQGI 61
            F++ QRAF+K+YLIT+ EQ + YG ++L+ LR +F+  GY P  SE+Y+ALH+L++ GI
Sbjct: 18  GFLLKQRAFLKLYLITLTEQERLYGLKLLDVLREEFQPFGYRPNHSEVYKALHDLIEDGI 77

Query: 62  LYRTKQLKGNDPKVDFQEIVLYHFTADGEEKARLYKKQVKTDLDRCLGILNKAVADNF 119
           L   +QLK     + +QE+V Y FT +G +KA+LYK+Q+KT+LDRC  ++ KA+ DNF
Sbjct: 78  L---EQLKKKKEGMKYQEVVYYRFTEEGYKKAQLYKRQLKTELDRCEALIRKAIKDNF 132


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.324    0.140    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 686,838,603
Number of extensions: 25252606
Number of successful extensions: 59812
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 59791
Number of HSP's successfully gapped: 17
Length of query: 119
Length of database: 3,060,696,203
Length adjustment: 85
Effective length of query: 34
Effective length of database: 2,259,909,928
Effective search space: 76836937552
Effective search space used: 76836937552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 126 (53.1 bits)