BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0518.0009.p
         (202 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KAX8.1 B3KAX8_9BACI Cobalamin 5'-phosphate synthase                 111   5e-23
B1DLT5.1 B1DLT5_9BACL Cobalamin 5'-phosphate synthase                  94   5e-18
C0Z7H6.1 C0Z7H6_BREBN Cobalamin (5'-phosphate) synthase                75   3e-12
Q2RJH3.1 Q2RJH3_MOOTA Cobalamin-5'-phosphate synthase EC=2.7.8.26      74   7e-12
A5V212.1 COBS_ROSS1 Cobalamin synthase EC=2.-.-.-                      70   1e-10

>B3KAX8.1 B3KAX8_9BACI Cobalamin 5'-phosphate synthase
          Length = 273

 Score =  111 bits (277), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 60/108 (55%), Positives = 67/108 (62%)

Query: 7   AAAAFQFLSRFPVKGGGDFSRELLQRSVVYYPXXXXXXXXXXXXXXXXXXXXXXXXXXXX 66
           AAAAFQFLSR PV+    F+ E+ QRSVV+YP                            
Sbjct: 8   AAAAFQFLSRLPVRREIPFTPEVQQRSVVFYPFVGAVIGVIVAALGLGLSFVLPSFPAAV 67

Query: 67  ITLILWVWLTGGLHLDGWMDCADGLLSYRTRERMLEIMKDSRIGAMGV 114
           I L  WV LTGGLHLDGWMD AD LLS+R+RERMLEIMKDSR+GAMGV
Sbjct: 68  ILLAAWVALTGGLHLDGWMDSADALLSHRSRERMLEIMKDSRVGAMGV 115


>B1DLT5.1 B1DLT5_9BACL Cobalamin 5'-phosphate synthase
          Length = 270

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 48/104 (46%), Positives = 59/104 (56%)

Query: 11  FQFLSRFPVKGGGDFSRELLQRSVVYYPXXXXXXXXXXXXXXXXXXXXXXXXXXXXITLI 70
            QFL+R PV     F    L R+V+Y+P                            + L 
Sbjct: 17  LQFLTRIPVPVTVPFEPVTLARTVIYFPAAGFLIGAILAGGFAVLELFSPAMPAAVLLLA 76

Query: 71  LWVWLTGGLHLDGWMDCADGLLSYRTRERMLEIMKDSRIGAMGV 114
           +W  L+GGLHLDGWMD ADG+LS+R+RERMLEIMKDSR+GAMGV
Sbjct: 77  IWTALSGGLHLDGWMDTADGVLSHRSRERMLEIMKDSRVGAMGV 120


>C0Z7H6.1 C0Z7H6_BREBN Cobalamin (5'-phosphate) synthase
          Length = 246

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 57/105 (54%), Gaps = 1/105 (0%)

Query: 10  AFQFLSRFPVKGGGDFSRELLQRSVVYYPXXXXXXXXXXXXXXXXXXXXXXXXXXXXITL 69
           A  F +R PV      S E  ++SV +YP                            +TL
Sbjct: 7   AISFFTRIPVPWLRP-SEEAWRKSVNWYPAVGLVIGLLLWGVHQAGLVLFSPWIAAILTL 65

Query: 70  ILWVWLTGGLHLDGWMDCADGLLSYRTRERMLEIMKDSRIGAMGV 114
           I WV++TGGLH+DGWMD ADGL S R RE++L IMKDSR+GAMGV
Sbjct: 66  IAWVYVTGGLHMDGWMDLADGLGSSRPREQILAIMKDSRVGAMGV 110


>Q2RJH3.1 Q2RJH3_MOOTA Cobalamin-5'-phosphate synthase EC=2.7.8.26
          Length = 261

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 44/106 (41%), Positives = 55/106 (51%), Gaps = 1/106 (0%)

Query: 9   AAFQFLSRFPVKGGGDFSRELLQRSVVYYPXXXXXXXXXXXXXXXXXXXXXXXXXXXXIT 68
           AA QFL+R  +    D      Q S+VY+P                              
Sbjct: 10  AALQFLTRIRLSKR-DTGATSFQESIVYFPLVGLILGLILAGAGQILSSLVPVPARAGFI 68

Query: 69  LILWVWLTGGLHLDGWMDCADGLLSYRTRERMLEIMKDSRIGAMGV 114
           L L ++L+GGLHLDG++D  DGLLS R RER+LEIMKDSR+GA GV
Sbjct: 69  LFLGIFLSGGLHLDGFIDTMDGLLSGRERERVLEIMKDSRVGAHGV 114


>A5V212.1 COBS_ROSS1 Cobalamin synthase EC=2.-.-.-
          Length = 268

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 53/104 (50%)

Query: 10  AFQFLSRFPVKGGGDFSRELLQRSVVYYPXXXXXXXXXXXXXXXXXXXXXXXXXXXXITL 69
           A +FL+  PV G    S E + +S+ Y+P                            + +
Sbjct: 25  ALRFLTILPVPGLPPMSEEAIPQSIRYFPIAGLVIGGILAAVGWGAGVLWNETVRAVVLV 84

Query: 70  ILWVWLTGGLHLDGWMDCADGLLSYRTRERMLEIMKDSRIGAMG 113
           + W  LT G+HLDG  D  DG++S+R+RER LEIM+DSRIG MG
Sbjct: 85  VAWGVLTAGMHLDGLSDTFDGVMSWRSRERKLEIMRDSRIGVMG 128


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.324    0.136    0.484 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 929,142,213
Number of extensions: 26939966
Number of successful extensions: 72807
Number of sequences better than 1.0e-05: 241
Number of HSP's gapped: 72841
Number of HSP's successfully gapped: 241
Length of query: 202
Length of database: 3,060,696,203
Length adjustment: 129
Effective length of query: 73
Effective length of database: 1,845,385,268
Effective search space: 134713124564
Effective search space used: 134713124564
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)