BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0518.0008.p (311 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KAW9.1 B3KAW9_9BACI Putative uncharacterized protein 184 1e-44 B1DLT3.1 B1DLT3_9BACL Putative uncharacterized protein 154 1e-35 C5D3K4.1 C5D3K4_9BACI Putative uncharacterized protein 106 3e-21 Q5KXN7.1 Q5KXN7_GEOKA Ferric ion ABC transporter (Permease) 103 2e-20 C3IYN3.1 C3IYN3_9BACI Putative uncharacterized protein 102 5e-20 >B3KAW9.1 B3KAW9_9BACI Putative uncharacterized protein Length = 244 Score = 184 bits (466), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 107/239 (44%), Positives = 137/239 (57%), Gaps = 5/239 (2%) Query: 7 PFNLKDGETMYASAVWPGLML----EWKPGHLLLEFPAEAEGLSSAVYGGGMGRLKRAVN 62 PF LK Y S WPG ++ E + H+ + P+ A +SSAVYGGG L VN Sbjct: 4 PF-LKGSNRPYNSDAWPGAIVSLDSEQQHPHIRISLPSPAASISSAVYGGGFLHLDHIVN 62 Query: 63 QFVSRDYECSNPVRDMEDKLREWGYPLEGCAGLMTAVPLEHAAVAEEDTGSAGIFCCVTX 122 ++V + Y+CS+P+ DM + GYP + AGLMTAV L++A++ E A + CC T Sbjct: 63 RYVDKHYDCSDPINDMVSFMAGHGYPTDSTAGLMTAVKLKYASIREARGEQASVLCCTTA 122 Query: 123 XXXXXXXXXXXXXXXXXYRPGTINIMLGIDGRLTPSAMVNXXXXXXXXXXXXXXDLGVTD 182 Y+PGTIN++L +DGRLTP+ MVN DLGV D Sbjct: 123 GVGNAARAGSRRTTFAAYQPGTINVVLAVDGRLTPACMVNAMLTAAEAKAAALHDLGVKD 182 Query: 183 PENGLIATGTTTDAVVLAVSGSGRYGAEHVYAGTATDLGGAIGRLVYAAVTASLGSVAE 241 E G ATGTTTDA+VLAVSG+ Y H YAGTATDLGG IGRLVY +VT S+ + E Sbjct: 183 HETGAAATGTTTDAMVLAVSGNSAYDVNHHYAGTATDLGGMIGRLVYDSVTESIAAERE 241 >B1DLT3.1 B1DLT3_9BACL Putative uncharacterized protein Length = 236 Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 89/227 (39%), Positives = 119/227 (52%), Gaps = 3/227 (1%) Query: 6 NPFNLKDGETMYASAVWPGLMLEWKPGHLLLEFPAEAEGLSSAVYGGGMGRLKRAVNQFV 65 PF + G+ Y+S +W G+ + + L + P + LS+A++ GG+ VN V Sbjct: 3 QPF--RQGQ-HYSSRLWDGVSITHREERLEICSPGKLRTLSNAIHTGGLAEADVIVNWKV 59 Query: 66 SRDYECSNPVRDMEDKLREWGYPLEGCAGLMTAVPLEHAAVAEEDTGSAGIFCCVTXXXX 125 Y ++P RD D+LR+WGY E GL+TA L HA+VAE + + C T Sbjct: 60 PLHYSGTDPARDTSDQLRQWGYEPEHTIGLLTAAKLTHASVAELEGDRFKLLCMTTAGTR 119 Query: 126 XXXXXXXXXXXXXXYRPGTINIMLGIDGRLTPSAMVNXXXXXXXXXXXXXXDLGVTDPEN 185 Y GTIN +L +DG++T SAM N DL + DPE Sbjct: 120 NAARAGLPRETFSAYSAGTINTVLLVDGQMTDSAMTNAIITYAEAKAAALADLQLMDPET 179 Query: 186 GLIATGTTTDAVVLAVSGSGRYGAEHVYAGTATDLGGAIGRLVYAAV 232 +IATGTTTDAVV+ VSG+ Y A H YAG AT +G AIGRLVY V Sbjct: 180 NMIATGTTTDAVVIGVSGNPAYQAVHAYAGAATTIGNAIGRLVYETV 226 >C5D3K4.1 C5D3K4_9BACI Putative uncharacterized protein Length = 494 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 67/193 (34%), Positives = 94/193 (48%), Gaps = 4/193 (2%) Query: 45 LSSAVYGGGMGRLKRAVNQFVSRDYECSNPVRDMEDKLREWGYPLEGCAGLMTAVPLEHA 104 LSSA+ G G VN+ VS+DY+C + +M+ LR G+P++ G+MTAV ++ A Sbjct: 295 LSSALVGSGFQWATHFVNRQVSKDYDCEDAETEMKHYLRRRGFPVQKTIGMMTAVSVQDA 354 Query: 105 AVAEEDTGSAGIFCCVTX-XXXXXXXXXXXXXXXXXYRPGTINIMLGIDGRLTPSAMVNX 163 E + ++ VT + GTINIM+ IDG LT +A V Sbjct: 355 VCMYEKHDAFSVWTVVTAGAGNAVDAAKAWTREELGQKIGTINIMVFIDGTLTDAAYVQA 414 Query: 164 XXXXXXXXXXXXXDLGVTDPENGLIATGTTTDAVVLAVSGSGRYGAEHVYAGTATDLGGA 223 D + DPE ATGT+TD + +A + + GA YAGT T +G A Sbjct: 415 LMTATEAKTKALYDEKIVDPETSTYATGTSTDCIAIAATQT---GATFPYAGTITPIGKA 471 Query: 224 IGRLVYAAVTASL 236 IGR VY A +L Sbjct: 472 IGRTVYEATKEAL 484 >Q5KXN7.1 Q5KXN7_GEOKA Ferric ion ABC transporter (Permease) Length = 490 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/194 (37%), Positives = 96/194 (49%), Gaps = 6/194 (3%) Query: 45 LSSAVYGGGMGRLKRAVNQFVSRDYECSNPVRDMEDKLREWGYPLEGCAGLMTAVPLEHA 104 LSSA+ G G VN+ V DY+C + DM L + G+ E G+MTAV + H Sbjct: 291 LSSALIGAGFQWATHFVNRQVGLDYDCGDAEGDMRRYLEQHGFSPERTIGMMTAVDV-HD 349 Query: 105 AVAEEDTGSAGIFCCVTXXXXXXXXXXXXXXXXX--XYRPGTINIMLGIDGRLTPSAMVN 162 AV + G A +T RPGTIN+++ IDG LT +A V Sbjct: 350 AVWLQKEGEAFSVAIMTTAGVGNAVDAARAWQHKPLAARPGTINMVIVIDGVLTEAAFVQ 409 Query: 163 XXXXXXXXXXXXXXDLGVTDPENGLIATGTTTDAVVLAVSGSGRYGAEHVYAGTATDLGG 222 D V D E G +ATGT+TD++ +A + +GR A YAGTAT+LG Sbjct: 410 AMMTATEAKVKALADCSVCDLETGTLATGTSTDSLAVAATQTGRTFA---YAGTATELGR 466 Query: 223 AIGRLVYAAVTASL 236 AIGRLVY A +L Sbjct: 467 AIGRLVYEATIEAL 480 >C3IYN3.1 C3IYN3_9BACI Putative uncharacterized protein Length = 490 Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 69/193 (35%), Positives = 95/193 (49%), Gaps = 4/193 (2%) Query: 45 LSSAVYGGGMGRLKRAVNQFVSRDYECSNPVRDMEDKLREWGYPLEGCAGLMTAVPLEHA 104 LSSA+ G G VN+ V DY+C + DM L + G+ E G+MTAV + A Sbjct: 291 LSSALIGAGFQWATHFVNRQVGLDYDCGDAEGDMRRYLEQHGFSPERTIGMMTAVDVRDA 350 Query: 105 AVAEEDTGSAGIFCCVTXXXXXXXXXXXX-XXXXXXYRPGTINIMLGIDGRLTPSAMVNX 163 +++ + + T RPGTIN+++ IDG LT +A V Sbjct: 351 VWLQKEGEAFSVAVMATAGVGNAVDAARAWQHKPLAARPGTINMVIVIDGVLTEAAFVQA 410 Query: 164 XXXXXXXXXXXXXDLGVTDPENGLIATGTTTDAVVLAVSGSGRYGAEHVYAGTATDLGGA 223 D V DPE +ATGT+TD++ +A + +GR A YAGTAT+LG A Sbjct: 411 MMTATEAKVKALADRSVCDPETRTLATGTSTDSLAVAATQTGRTFA---YAGTATELGRA 467 Query: 224 IGRLVYAAVTASL 236 IGRLVY A +L Sbjct: 468 IGRLVYEATIEAL 480 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.313 0.132 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,791,343,968 Number of extensions: 71993473 Number of successful extensions: 182541 Number of sequences better than 1.0e-05: 32 Number of HSP's gapped: 182526 Number of HSP's successfully gapped: 32 Length of query: 311 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 176 Effective length of database: 1,788,859,178 Effective search space: 314839215328 Effective search space used: 314839215328 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 131 (55.1 bits)