BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0518.0006.p (274 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KAX1.1 B3KAX1_9BACI Phosphoglycerate mutase 131 5e-29 A4IQD7.1 A4IQD7_GEOTN Alpha-ribazole-5'-phosphate phosphatase 102 4e-20 B4BL51.1 B4BL51_9BACI Phosphoglycerate mutase 102 4e-20 B0G7P8.1 B0G7P8_9FIRM Putative uncharacterized protein 99 3e-19 A6CHV5.1 A6CHV5_9BACI Putative uncharacterized protein 99 3e-19 >B3KAX1.1 B3KAX1_9BACI Phosphoglycerate mutase Length = 266 Score = 131 bits (330), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 81/231 (35%), Positives = 107/231 (46%), Gaps = 57/231 (24%) Query: 77 LVLIRHGHTLWNKERRYLGSTDLALLPESRXXXXXXXQPELAGSFWRVYCSDMRRCRETL 136 L L+RHG TLWN+ERRYLG D +L E R + F R+YCSD+ RCR+TL Sbjct: 7 LHLVRHGRTLWNEERRYLGHEDQGILAEGREQLLPLREELRCRHFVRIYCSDLLRCRQTL 66 Query: 137 ELIAPALLQNAI--------------YDSRLREMSFGAWEGHTYEQLQYLPQYRSWIDDP 182 +I + A+ YD RLRE+ FG WEG TYE L+ YR WID+P Sbjct: 67 HVILSDSKRGAVPDDDILGQFIPGVRYDPRLRELDFGDWEGKTYEDLKTDSLYRRWIDNP 126 Query: 183 AASTPPGGEAWSEFTGRVEHFVSGLLQAAAAVPGLKNS---------------------- 220 A TPP GE+W F RV+ F+SGL + ++ + Sbjct: 127 AEVTPPSGESWEAFGSRVQAFLSGLHLDVKELLHMEEAPDTLAQAEAEAEAEAEAEAEAE 186 Query: 221 ---------------------SHAGPLRVLVVTHGGIIRQLLARTMEGRSF 250 + A + VLVVTHGG+IR++ A T+ F Sbjct: 187 AEAEAEAEAEAEARRGDDGRETRAEGVDVLVVTHGGVIREMAAATVPDTEF 237 >A4IQD7.1 A4IQD7_GEOTN Alpha-ribazole-5'-phosphate phosphatase Length = 216 Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 60/170 (35%), Positives = 89/170 (52%), Gaps = 11/170 (6%) Query: 72 GLVLELVLIRHGHTLWNKERRYLGSTDLALLPESRXXXXXXXQPELAGSFWRVYCSDMRR 131 G L + IRHG T N++R Y+G TD L R +P+L + R+ SD+RR Sbjct: 2 GRRLAITFIRHGMTALNRQRAYIGWTDAPLAAAERVRLSSL-KPKLPMAVDRIVSSDLRR 60 Query: 132 CRETLELIAPALLQNAIYDSRLREMSFGAWEGHTYEQLQYLPQYRSWIDDPAASTPPGGE 191 CRET L+ + + S RE+SFG WEG T+ +L P YR W++ P + PPGGE Sbjct: 61 CRETAALLFGGRPAD-WWTSWWRELSFGDWEGKTFAELNEDPAYRQWLEAPFSVAPPGGE 119 Query: 192 AWSEFTGRVEHFVSGLLQAAAAVPGLKNSSHAGPLRVLVVTHGGIIRQLL 241 +++ F R++ + L A +G + ++THGG IR +L Sbjct: 120 SYAGFQKRIKQAFTKTLALA---------ERSGARHIAIITHGGPIRFML 160 >B4BL51.1 B4BL51_9BACI Phosphoglycerate mutase Length = 216 Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 60/170 (35%), Positives = 89/170 (52%), Gaps = 11/170 (6%) Query: 72 GLVLELVLIRHGHTLWNKERRYLGSTDLALLPESRXXXXXXXQPELAGSFWRVYCSDMRR 131 G L + IRHG T N++R Y+G TD L R +P+L + R+ SD+RR Sbjct: 2 GRRLAITFIRHGMTALNRQRAYIGWTDAPLAAAERVRLSSL-KPKLPMAVDRIVSSDLRR 60 Query: 132 CRETLELIAPALLQNAIYDSRLREMSFGAWEGHTYEQLQYLPQYRSWIDDPAASTPPGGE 191 CRET L+ + + S RE+SFG WEG T+ +L P YR W++ P + PPGGE Sbjct: 61 CRETAALLFGGRPAD-WWTSWWRELSFGDWEGKTFAELNEDPAYRQWLEAPFSVAPPGGE 119 Query: 192 AWSEFTGRVEHFVSGLLQAAAAVPGLKNSSHAGPLRVLVVTHGGIIRQLL 241 +++ F R++ + L A +G + ++THGG IR +L Sbjct: 120 SYAGFQKRIKQAFTKTLALA---------ERSGARHIAIITHGGPIRFML 160 >B0G7P8.1 B0G7P8_9FIRM Putative uncharacterized protein Length = 242 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 61/170 (35%), Positives = 82/170 (48%), Gaps = 12/170 (7%) Query: 74 VLELVLIRHGHTLWNKERRYLGSTDLALLPESRXXXXXXXQPELAGSFWRVYCSDMRRCR 133 +++L LIRH T N ++RY+G TD +L PE Q + RVY S M+RC Sbjct: 12 MIQLYLIRHSMTAGNLKKRYIGRTDESLCPEGIVLLESYIQKNIYPEVQRVYVSPMKRCM 71 Query: 134 ETLELIAPALLQNAIYDSRLREMSFGAWEGHTYEQLQYLPQYRSWIDDPAASTPPGGEAW 193 ET +LI +N LRE FG +E Y++L P+Y++WID T PGGE Sbjct: 72 ETAKLI---FKENFYEVEELRECDFGIFENKNYKELSDCPEYQAWIDSGGTMTFPGGENP 128 Query: 194 SEFTGRVEHFVSGLLQAAAAVPGLKNSSHAGPLRVLVVTHGGIIRQLLAR 243 EF R V G + +K H V VV HGG I ++ R Sbjct: 129 EEFRKRC---VRGFEKV------IKECRHDQIKSVAVVAHGGTIMSIMDR 169 >A6CHV5.1 A6CHV5_9BACI Putative uncharacterized protein Length = 213 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 65/176 (36%), Positives = 93/176 (52%), Gaps = 15/176 (8%) Query: 79 LIRHGHTLWNKERRYLGSTDLALLPESRXXXXXXXQPELAGSFWRVYCSDMRRCRETLEL 138 L RH T N ER+Y+G D+ L+ R P+ V+ SD+ RCRET Sbjct: 9 LYRHAVTTENLERKYIGWDDVPLVNTKRLEEEAHRYPQYDV----VFTSDLVRCRETANA 64 Query: 139 IAPALLQNAIYDSRL-REMSFGAWEGHTYEQLQYLPQYRSWIDDPAASTPPGGEAWSEFT 197 + P I +SRL RE+ FG WE TYE+L++ Y +W++D + PGGE+ +EF Sbjct: 65 LFP---DTPIMESRLLREIHFGQWENKTYEELKHEKDYCNWLNDQSLPI-PGGESLAEFE 120 Query: 198 GRVEHFVSGLLQAAAAVPGL--KNSSHAGPLRVLVVTHGGIIRQLLAR-TMEGRSF 250 R++HF L + P K H LRV +VTHGG+IR L + T + ++F Sbjct: 121 NRLDHFWLAFL---SHFPEFIEKYPKHHNGLRVALVTHGGVIRYFLKKWTADPKAF 173 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.134 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,603,254,720 Number of extensions: 64020585 Number of successful extensions: 112986 Number of sequences better than 1.0e-05: 970 Number of HSP's gapped: 112947 Number of HSP's successfully gapped: 972 Length of query: 274 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 140 Effective length of database: 1,798,280,193 Effective search space: 251759227020 Effective search space used: 251759227020 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)