BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0518.0005.p (486 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0ZDG2.1 C0ZDG2_BREBN Probable transcriptional regulator 668 0.0 B1D4T7.1 B1D4T7_9BACL Transcriptional regulator, GntR family wit... 648 0.0 Q81Q30.1 Q81Q30_BACAN Transcriptional regulator, GntR family 613 e-173 Q63AX3.1 Q63AX3_BACCZ Transcriptional regulator, GntR family 613 e-173 C3PB70.1 C3PB70_BACAA Transcriptional regulator, GntR family 613 e-173 >C0ZDG2.1 C0ZDG2_BREBN Probable transcriptional regulator Length = 496 Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/494 (65%), Positives = 386/494 (78%), Gaps = 9/494 (1%) Query: 1 MFKDFRLIAGRPVYIQVKDYMKHLMIKGALQGGQKLPSTRELSTLLGVSRNSVISAYEAL 60 MF+DFRL+ RPV IQVK+Y+K L+IKGALQ QKLPSTRE+S+LL VSRN+VI+AYE L Sbjct: 1 MFQDFRLVGDRPVAIQVKEYVKRLIIKGALQADQKLPSTREMSSLLKVSRNTVIAAYEGL 60 Query: 61 ADDGFTYXX----XXXXXXXXXXXXXXXXXXXXXXWTLDWTARLSSQAKLAEELDIMKRG 116 DDGFTY W +DW AR++ A A ELD+MK+G Sbjct: 61 EDDGFTYAIPGKGSYVSTMVCHLAANNGDTEGSAAWQIDWKARMNEYAVSAVELDMMKQG 120 Query: 117 IRAAKGTISFTSIAPDESLFDLDNVKRAFLERMAVEGNVLLNYGYAKGYKPLIDYLKQYM 176 IR K TISFTSIAPDE +FDL +V+RAF++RMA+EG VLLNYGYAKGYKPLIDYL +YM Sbjct: 121 IRGKKATISFTSIAPDEQIFDLGDVRRAFMDRMAIEGQVLLNYGYAKGYKPLIDYLMRYM 180 Query: 177 EHKGVDMRGKDLLITNGFTEGFDVVLSAL--GRKAGAVVCENPTHHTAIKNMKLHGFEIA 234 E+KGVD+ GKD+LIT+GFTEGFD+VLSA+ + GA +CENPTHHTAIKN++L GFEI Sbjct: 181 ENKGVDVSGKDMLITSGFTEGFDIVLSAIRPSSRRGAAICENPTHHTAIKNLQLQGFEIT 240 Query: 235 GVPMERDGIHLGELKRALEAR--EYDCAYFVPSYHNPTGIVMSPEKRQRLMKLMAEYKVP 292 G+PME DGI + +L+ L+ + +D AY PSYHNPTGIVMSP KR +MKL+ Y++P Sbjct: 241 GIPMESDGIDVEQLEAVLQKQTNSFDLAYLTPSYHNPTGIVMSPAKRSAVMKLLMHYQIP 300 Query: 293 VIEDGFNEELRYSGSHVAPLIAAAGGGNGVIYLGSFSKVLFPGLRVGWVIADQELIYYLE 352 VIEDGFNEELRYSG+HVAPLIA AG GNGVIY+GSFSKVLFPGLRVGWV+ D+ L+ +LE Sbjct: 301 VIEDGFNEELRYSGAHVAPLIATAGQGNGVIYIGSFSKVLFPGLRVGWVLGDKALLDHLE 360 Query: 353 SVKRARSIHTSTLDQSILYQYLLGGNLEKYLKRARAEYKRKYELTLACCQEHIPYASLTG 412 S+KRAR+IHTST+DQSILYQYLL GN +KY+K+AR EYKRKYELT ACC+ H+P A L+G Sbjct: 361 SMKRARTIHTSTIDQSILYQYLLNGNFDKYIKKARMEYKRKYELTKACCEAHLPEAQLSG 420 Query: 413 DGGLHLFATFAEGFSTRKLLDACREQGVIFTAGDMFYTN-GQGQNTLRLGFSRVADGDIL 471 DGGLHLF TF +TR+LL+AC EQGVIFT GD F+ G G NTLRLGFSRV D +I Sbjct: 421 DGGLHLFLTFPSVVNTRQLLEACTEQGVIFTPGDKFFIQEGTGTNTLRLGFSRVTDENIE 480 Query: 472 KGIEIIGRTARQLL 485 +GI IIG+ AR LL Sbjct: 481 RGIRIIGKQARLLL 494 >B1D4T7.1 B1D4T7_9BACL Transcriptional regulator, GntR family with aminotransferase domain Length = 495 Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust. Identities = 307/487 (63%), Positives = 380/487 (78%), Gaps = 2/487 (0%) Query: 1 MFKDFRLIAGRPVYIQVKDYMKHLMIKGALQGGQKLPSTRELSTLLGVSRNSVISAYEAL 60 ++ D + + RPV +QVKDYMK LMI GALQ QKLPSTRELS L+ V RN++++AY L Sbjct: 9 VYSDIQFVGDRPVSMQVKDYMKRLMITGALQANQKLPSTRELSLLMNVGRNTIVTAYADL 68 Query: 61 ADDGFTYXXXXXXXXXXXXXXXXXXXXXXXXWTLDWTARLSSQAKLAEELDIMKRGIRAA 120 D+GF Y LDW+ R++ A+ AEE D+MK GIRA Sbjct: 69 VDEGFIYAVKGKGNFVAQSAGGVAAEEGTGK-RLDWSERINDLARAAEEHDLMKHGIRAK 127 Query: 121 KGTISFTSIAPDESLFDLDNVKRAFLERMAVEGNVLLNYGYAKGYKPLIDYLKQYMEHKG 180 +G ISFTSIAPDE LFDL NVKRAFL+RM++EGN++LNYGYAKGYKPLI++L +YME+KG Sbjct: 128 RGAISFTSIAPDEKLFDLQNVKRAFLDRMSLEGNIILNYGYAKGYKPLIEFLMRYMENKG 187 Query: 181 VDMRGKDLLITNGFTEGFDVVLSALGRKAGAVVCENPTHHTAIKNMKLHGFEIAGVPMER 240 VD+ GKD+LITNGFTEGFD+VLSALG+ G +CENPTHHTAIKN+K+H F I GV ME Sbjct: 188 VDLGGKDMLITNGFTEGFDLVLSALGKSNGHALCENPTHHTAIKNLKMHQFAITGVDMEP 247 Query: 241 DGIHLGELKRALEAREYDCAYFVPSYHNPTGIVMSPEKRQRLMKLMAEYKVPVIEDGFNE 300 DGI L +L+ L + +D AY VPSYHNPTGIVMS EKR ++++ + ++P+IEDGFNE Sbjct: 248 DGISLEQLEEKLGGQGFDLAYLVPSYHNPTGIVMSHEKRAETVRMLNDRRIPIIEDGFNE 307 Query: 301 ELRYSGSHVAPLIAAAGG-GNGVIYLGSFSKVLFPGLRVGWVIADQELIYYLESVKRARS 359 ELRYSG+HVAPL+A G NG IYLGSFSK+LFPGLRVGW++AD+ELI YLESVKRAR+ Sbjct: 308 ELRYSGAHVAPLLAYGGNRNNGTIYLGSFSKILFPGLRVGWILADKELIDYLESVKRART 367 Query: 360 IHTSTLDQSILYQYLLGGNLEKYLKRARAEYKRKYELTLACCQEHIPYASLTGDGGLHLF 419 IHTSTLDQS+LYQYL GN EKYLKRA+AEYKRKYEL + CC+ ++P L+GDGGLHLF Sbjct: 368 IHTSTLDQSLLYQYLHNGNFEKYLKRAKAEYKRKYELAVECCKTYLPLKRLSGDGGLHLF 427 Query: 420 ATFAEGFSTRKLLDACREQGVIFTAGDMFYTNGQGQNTLRLGFSRVADGDILKGIEIIGR 479 F E FSTR+LL AC EQGV+FT GD+FYT+G G++T+RLGFSRV+D +I+KGI++IG Sbjct: 428 VEFEENFSTRELLQACTEQGVLFTPGDIFYTDGGGRHTMRLGFSRVSDENIVKGIQMIGD 487 Query: 480 TARQLLG 486 A+ +LG Sbjct: 488 AAKAMLG 494 >Q81Q30.1 Q81Q30_BACAN Transcriptional regulator, GntR family Length = 482 Score = 613 bits (1581), Expect = e-173, Method: Compositional matrix adjust. Identities = 282/483 (58%), Positives = 364/483 (75%), Gaps = 5/483 (1%) Query: 1 MFKDFRLIAGRPVYIQVKDYMKHLMIKGALQGGQKLPSTRELSTLLGVSRNSVISAYEAL 60 MFKDF+++ RPVYIQ+KDY+K +++KG L G QK+PSTRELS LL VSRN+V++AY L Sbjct: 1 MFKDFKVVKDRPVYIQLKDYLKKMIMKGHLLGDQKIPSTRELSELLSVSRNTVLAAYADL 60 Query: 61 ADDGFTYXXXXXXXXXXXXXXXXXXXXXXXXWTLDWTARLSSQAKLAEELDIMKRGIRAA 120 +G Y +DW +L++ LA+ELD+MK G+R Sbjct: 61 EQEGLIYAVKGKGNFVAKVDISNTSSV-----EIDWKNKLNTVTLLADELDLMKHGVRWE 115 Query: 121 KGTISFTSIAPDESLFDLDNVKRAFLERMAVEGNVLLNYGYAKGYKPLIDYLKQYMEHKG 180 KG I F SIAPDE LFD++N KRAFL RM++EG+V+LNYGYAKGY+PL++YL YME KG Sbjct: 116 KGMIVFNSIAPDEKLFDVENFKRAFLTRMSIEGDVVLNYGYAKGYRPLMNYLLHYMEMKG 175 Query: 181 VDMRGKDLLITNGFTEGFDVVLSALGRKAGAVVCENPTHHTAIKNMKLHGFEIAGVPMER 240 VD+ KD+LITNGFTEG D+V+S+L +K+G V+CENPTHH A+K +LHG E+ G+ M Sbjct: 176 VDISNKDILITNGFTEGLDIVISSLSKKSGRVICENPTHHAALKLFRLHGLEVHGIDMNE 235 Query: 241 DGIHLGELKRALEAREYDCAYFVPSYHNPTGIVMSPEKRQRLMKLMAEYKVPVIEDGFNE 300 DGI +++++L +E+D AY +PSYHNPTGIV S EKR LM+L ++YK+P+IEDGFNE Sbjct: 236 DGIDTNQVEKSLREKEFDFAYLIPSYHNPTGIVTSSEKRTELMRLFSKYKIPIIEDGFNE 295 Query: 301 ELRYSGSHVAPLIAAAGGGNGVIYLGSFSKVLFPGLRVGWVIADQELIYYLESVKRARSI 360 ELRYSGSH+APL+ AG GN VIY+ SFSKVLFPGLRVGW+IAD+ELI+YLESVKRAR+I Sbjct: 296 ELRYSGSHLAPLLTFAGAGNNVIYISSFSKVLFPGLRVGWIIADKELIHYLESVKRARTI 355 Query: 361 HTSTLDQSILYQYLLGGNLEKYLKRARAEYKRKYELTLACCQEHIPYASLTGDGGLHLFA 420 HTSTLDQ++L+QYL G EKYLK+AR+ YK+KYEL + C E+IP+ +TGDGGLHLF Sbjct: 356 HTSTLDQAVLFQYLHEGYFEKYLKKARSVYKKKYELAVGMCNEYIPFQRMTGDGGLHLFI 415 Query: 421 TFAEGFSTRKLLDACREQGVIFTAGDMFYTNGQGQNTLRLGFSRVADGDILKGIEIIGRT 480 E R LL C EQGV F+ GD+FY+NG+G NT RLGFSR+ + +I++GI+IIG T Sbjct: 416 ELEEKIHARTLLQKCYEQGVTFSPGDVFYSNGEGINTFRLGFSRLKEEEIVRGIKIIGDT 475 Query: 481 ARQ 483 + Sbjct: 476 IKN 478 >Q63AX3.1 Q63AX3_BACCZ Transcriptional regulator, GntR family Length = 482 Score = 613 bits (1581), Expect = e-173, Method: Compositional matrix adjust. Identities = 282/483 (58%), Positives = 364/483 (75%), Gaps = 5/483 (1%) Query: 1 MFKDFRLIAGRPVYIQVKDYMKHLMIKGALQGGQKLPSTRELSTLLGVSRNSVISAYEAL 60 MFKDF+++ RPVYIQ+KDY+K +++KG L G QK+PSTRELS LL VSRN+V++AY L Sbjct: 1 MFKDFKVVKDRPVYIQLKDYLKKMIMKGHLLGDQKIPSTRELSELLSVSRNTVLAAYADL 60 Query: 61 ADDGFTYXXXXXXXXXXXXXXXXXXXXXXXXWTLDWTARLSSQAKLAEELDIMKRGIRAA 120 +G Y +DW +L++ LA+ELD+MK G+R Sbjct: 61 EQEGLIYAVKGKGNFVAKVDISNTSSV-----EIDWKNKLNTVTLLADELDLMKHGVRWE 115 Query: 121 KGTISFTSIAPDESLFDLDNVKRAFLERMAVEGNVLLNYGYAKGYKPLIDYLKQYMEHKG 180 KG I F SIAPDE LFD++N KRAFL RM++EG+V+LNYGYAKGY+PL++YL YME KG Sbjct: 116 KGMIVFNSIAPDEKLFDVENFKRAFLTRMSIEGDVVLNYGYAKGYRPLMNYLLHYMEMKG 175 Query: 181 VDMRGKDLLITNGFTEGFDVVLSALGRKAGAVVCENPTHHTAIKNMKLHGFEIAGVPMER 240 VD+ KD+LITNGFTEG D+V+S+L +K+G V+CENPTHH A+K +LHG E+ G+ M Sbjct: 176 VDISNKDILITNGFTEGLDIVISSLSKKSGRVICENPTHHAALKLFRLHGLEVHGIDMNE 235 Query: 241 DGIHLGELKRALEAREYDCAYFVPSYHNPTGIVMSPEKRQRLMKLMAEYKVPVIEDGFNE 300 DGI +++++L +E+D AY +PSYHNPTGIV S EKR LM+L ++YK+P+IEDGFNE Sbjct: 236 DGIDTNQVEKSLREKEFDFAYLIPSYHNPTGIVTSSEKRTELMRLFSKYKIPIIEDGFNE 295 Query: 301 ELRYSGSHVAPLIAAAGGGNGVIYLGSFSKVLFPGLRVGWVIADQELIYYLESVKRARSI 360 ELRYSGSH+APL+ AG GN VIY+ SFSKVLFPGLRVGW+IAD+ELI+YLESVKRAR+I Sbjct: 296 ELRYSGSHLAPLLTFAGAGNNVIYISSFSKVLFPGLRVGWIIADKELIHYLESVKRARTI 355 Query: 361 HTSTLDQSILYQYLLGGNLEKYLKRARAEYKRKYELTLACCQEHIPYASLTGDGGLHLFA 420 HTSTLDQ++L+QYL G EKYLK+AR+ YK+KYEL + C E+IP+ +TGDGGLHLF Sbjct: 356 HTSTLDQAVLFQYLHEGYFEKYLKKARSVYKKKYELAVGMCNEYIPFQRMTGDGGLHLFI 415 Query: 421 TFAEGFSTRKLLDACREQGVIFTAGDMFYTNGQGQNTLRLGFSRVADGDILKGIEIIGRT 480 E R LL C EQGV F+ GD+FY+NG+G NT RLGFSR+ + +I++GI+IIG T Sbjct: 416 ELEEKIHARTLLQKCYEQGVTFSPGDVFYSNGEGINTFRLGFSRLKEEEIVRGIKIIGDT 475 Query: 481 ARQ 483 + Sbjct: 476 IKN 478 >C3PB70.1 C3PB70_BACAA Transcriptional regulator, GntR family Length = 482 Score = 613 bits (1581), Expect = e-173, Method: Compositional matrix adjust. Identities = 282/483 (58%), Positives = 364/483 (75%), Gaps = 5/483 (1%) Query: 1 MFKDFRLIAGRPVYIQVKDYMKHLMIKGALQGGQKLPSTRELSTLLGVSRNSVISAYEAL 60 MFKDF+++ RPVYIQ+KDY+K +++KG L G QK+PSTRELS LL VSRN+V++AY L Sbjct: 1 MFKDFKVVKDRPVYIQLKDYLKKMIMKGHLLGDQKIPSTRELSELLSVSRNTVLAAYADL 60 Query: 61 ADDGFTYXXXXXXXXXXXXXXXXXXXXXXXXWTLDWTARLSSQAKLAEELDIMKRGIRAA 120 +G Y +DW +L++ LA+ELD+MK G+R Sbjct: 61 EQEGLIYAVKGKGNFVAKVDISNTSSV-----EIDWKNKLNTVTLLADELDLMKHGVRWE 115 Query: 121 KGTISFTSIAPDESLFDLDNVKRAFLERMAVEGNVLLNYGYAKGYKPLIDYLKQYMEHKG 180 KG I F SIAPDE LFD++N KRAFL RM++EG+V+LNYGYAKGY+PL++YL YME KG Sbjct: 116 KGMIVFNSIAPDEKLFDVENFKRAFLTRMSIEGDVVLNYGYAKGYRPLMNYLLHYMEMKG 175 Query: 181 VDMRGKDLLITNGFTEGFDVVLSALGRKAGAVVCENPTHHTAIKNMKLHGFEIAGVPMER 240 VD+ KD+LITNGFTEG D+V+S+L +K+G V+CENPTHH A+K +LHG E+ G+ M Sbjct: 176 VDISNKDILITNGFTEGLDIVISSLSKKSGRVICENPTHHAALKLFRLHGLEVHGIDMNE 235 Query: 241 DGIHLGELKRALEAREYDCAYFVPSYHNPTGIVMSPEKRQRLMKLMAEYKVPVIEDGFNE 300 DGI +++++L +E+D AY +PSYHNPTGIV S EKR LM+L ++YK+P+IEDGFNE Sbjct: 236 DGIDTNQVEKSLREKEFDFAYLIPSYHNPTGIVTSSEKRTELMRLFSKYKIPIIEDGFNE 295 Query: 301 ELRYSGSHVAPLIAAAGGGNGVIYLGSFSKVLFPGLRVGWVIADQELIYYLESVKRARSI 360 ELRYSGSH+APL+ AG GN VIY+ SFSKVLFPGLRVGW+IAD+ELI+YLESVKRAR+I Sbjct: 296 ELRYSGSHLAPLLTFAGAGNNVIYISSFSKVLFPGLRVGWIIADKELIHYLESVKRARTI 355 Query: 361 HTSTLDQSILYQYLLGGNLEKYLKRARAEYKRKYELTLACCQEHIPYASLTGDGGLHLFA 420 HTSTLDQ++L+QYL G EKYLK+AR+ YK+KYEL + C E+IP+ +TGDGGLHLF Sbjct: 356 HTSTLDQAVLFQYLHEGYFEKYLKKARSVYKKKYELAVGMCNEYIPFQRMTGDGGLHLFI 415 Query: 421 TFAEGFSTRKLLDACREQGVIFTAGDMFYTNGQGQNTLRLGFSRVADGDILKGIEIIGRT 480 E R LL C EQGV F+ GD+FY+NG+G NT RLGFSR+ + +I++GI+IIG T Sbjct: 416 ELEEKIHARTLLQKCYEQGVTFSPGDVFYSNGEGINTFRLGFSRLKEEEIVRGIKIIGDT 475 Query: 481 ARQ 483 + Sbjct: 476 IKN 478 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.139 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,769,955,969 Number of extensions: 117282495 Number of successful extensions: 314635 Number of sequences better than 1.0e-05: 4626 Number of HSP's gapped: 307390 Number of HSP's successfully gapped: 4644 Length of query: 486 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 346 Effective length of database: 1,741,754,103 Effective search space: 602646919638 Effective search space used: 602646919638 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)