BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0517.0006.p (761 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DB33.1 B1DB33_9BACL Transcriptional regulator, AraC family 1119 0.0 B3KJV7.1 B3KJV7_9BACI Helix-turn-helix-domain containing protein... 167 3e-39 B1DB60.1 B1DB60_9BACL Transcriptional regulator, AraC family 146 9e-33 B3KHE9.1 B3KHE9_9BACI Helix-turn-helix-domain containing protein... 134 5e-29 B1D7I4.1 B1D7I4_9BACL Transcriptional regulator, AraC family 128 3e-27 >B1DB33.1 B1DB33_9BACL Transcriptional regulator, AraC family Length = 766 Score = 1119 bits (2894), Expect = 0.0, Method: Compositional matrix adjust. Identities = 561/758 (74%), Positives = 640/758 (84%), Gaps = 5/758 (0%) Query: 1 MFVKLLLSLTAIAVITVILISTVTYSISADNSIQNAIAYNESILTQQQELIHKELTAIKY 60 MFVK LLSLTAIAVITV+LI++VTYSISADNSIQNAI YNES+LTQQQELIHKELT+IKY Sbjct: 10 MFVKQLLSLTAIAVITVVLIASVTYSISADNSIQNAITYNESVLTQQQELIHKELTSIKY 69 Query: 61 AASGMITTQSYLYHTNGSGKLSVSSMIDLSNFVEAQKKISPYIDSIYLYYAPLELVLTSR 120 AS MI TQ+YLY GS KLSVSS+IDL+ FV QKKISPYIDSIY+YYAPLELVLTSR Sbjct: 70 NASSMIATQTYLYQMKGS-KLSVSSLIDLTGFVAEQKKISPYIDSIYIYYAPLELVLTSR 128 Query: 121 PEIRTSPISTFADRSWLEVWKQQSDNRTLWLTGRMDGFEPDQPAASLLQKMPLIGQVNGA 180 EIRTSPISTFADRSWL+ WKQ S +R++W+TGR DGF PD AASLLQKMPLIGQVNGA Sbjct: 129 QEIRTSPISTFADRSWLDTWKQPSASRSVWITGRQDGFSPDHSAASLLQKMPLIGQVNGA 188 Query: 181 IVMNLKLQLLFDDYLSHYHNKKGATLVLGPHSELLYSDSADGDSLLAQLDPARLTGGSGY 240 IV+NLKL LLF+DYLSHYHNKKG TLVLG +SELLY+D+ADGD L+ ++ +RL SG Sbjct: 189 IVINLKLDLLFNDYLSHYHNKKGTTLVLGANSELLYTDAADGDRLMKAVNLSRLNAESGS 248 Query: 241 YMDDSDRIVSYTTSELTGWRFVDITKRSSLLQGMDRIKFIXXXXXXXXXXXXXXISFYLS 300 Y+DDSDRI+SYTTSELTGW+F+D+T++S+LLQGM RIK I ISF++S Sbjct: 249 YIDDSDRIISYTTSELTGWKFIDVTEKSTLLQGMGRIKVIVVSVAAAYLTAAIAISFFVS 308 Query: 301 RRLYRPLQSVISYIXXXXXXXXXXXXXPLPAGDEAGFIRHIYDQLVRNWETLMTEKRKVD 360 RRLYRPL SVISYI PLP GDEAGFIR ++Q++R+WE L EKRKVD Sbjct: 309 RRLYRPLHSVISYIENAAHDQRDGAIKPLPTGDEAGFIRQRFEQMIRSWEILAKEKRKVD 368 Query: 361 SLLTDNHTAIKEKYLNGLIQ-GDSTDQAAELLGLRLDFTRFAVLTLELEEPYPVKGPDGI 419 SLLTDN TAIKEKYLN LIQ G+ QA ELLGLRLDF+RFA+LTLELEEPYPVK D Sbjct: 369 SLLTDNRTAIKEKYLNDLIQGGEGNGQAVELLGLRLDFSRFALLTLELEEPYPVK-DDPF 427 Query: 420 QFYLFRYGLMEELGADIDGEIFAKDDKRTVILLNVPAEEDDFPLEQAKRLKQLLLTRYSL 479 F+L RYG M+ELGADI+GE+FAKDDKRTVILL VP E D+FPLE AKRLKQ +LTRY L Sbjct: 428 HFHLLRYGFMDELGADINGEVFAKDDKRTVILLAVPPENDEFPLEYAKRLKQHMLTRYGL 487 Query: 480 NVTIAVSRNYSGEQSVCSAYEDTLEALNLKMYIGKGEILPYGILGDWK-SQEEAYYYPYE 538 VTIAVSR +GE+SV AYEDT+ LNLK+YIGKGE+LPY ILGDW+ +EEAYYYPY+ Sbjct: 488 TVTIAVSRICTGEESVRLAYEDTIAVLNLKIYIGKGEVLPYSILGDWQAEEEEAYYYPYD 547 Query: 539 LETKLLQALLQTDKEQCFGAIRQITRTAIDRKLGKANIQQLFFQLSGEIMKTLVQTRGDM 598 LE KL QALLQTDK QCF +R+IT TAID+KL KANIQQLFFQLSGEI+KTLVQ+RGD+ Sbjct: 548 LEAKLQQALLQTDKGQCFDTLREITGTAIDKKLSKANIQQLFFQLSGEIVKTLVQSRGDI 607 Query: 599 SAVFGDRPAYADVLSRAETLPDMEECLLDMCGRIIAYHKEKRSKMTDVTLQLATDYMDVN 658 +AVFG R AYAD+++RAETL DME+CL++MC RII YH+EKRSKMTDVTLQLA DYMD N Sbjct: 608 AAVFGSRAAYADLIARAETLKDMEKCLIEMCDRIIDYHREKRSKMTDVTLQLAIDYMDAN 667 Query: 659 FNKNISVDTVAEHVQRSSSYLSRIFKESTGMTINDYLIQLRIKRAMELL-QLDLTIEEIC 717 FN NISVDTVAE+V+RSSSYLSRIFKES GMTINDYLIQLRI+RA ELL Q++L+IEEIC Sbjct: 668 FNNNISVDTVAEYVERSSSYLSRIFKESMGMTINDYLIQLRIRRATELLGQVNLSIEEIC 727 Query: 718 RDVGYANVSYFNKIFKARTGQTPGQYRQQQAADRLLSQ 755 ++GYANVSYFNKIFKARTG TPGQYRQQ AA++LLSQ Sbjct: 728 HEIGYANVSYFNKIFKARTGLTPGQYRQQHAAEKLLSQ 765 >B3KJV7.1 B3KJV7_9BACI Helix-turn-helix-domain containing protein AraC type Length = 789 Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 190/736 (25%), Positives = 329/736 (44%), Gaps = 114/736 (15%) Query: 74 HTNGSGKLSVSSMIDLSNFVEAQKKISPYIDSIYLYYAPLELVLTSRPEIRTSPISTFAD 133 H G V + D N Q +S ++ Y++ +++L +P +RT TF D Sbjct: 97 HDQGGAYRQVEFLRDYLN--RYQSFVSGFVKDYYVHLQAGDVIL--KPGLRTDA-RTFYD 151 Query: 134 RSW------LEVWKQQ---SDNRTLWLTGRMDGFEPDQ----PA--ASLLQKMPL--IGQ 176 + + E WKQ S + +L + P+Q PA + Q +PL + Sbjct: 152 KYYRFEHMDFETWKQTMLGSYHNKAFLPSDVLLQNPNQGNGNPADVITYAQSLPLHDVSN 211 Query: 177 VNGAIVMNLKLQLLFDDYLSHYHNKKGATLVLGPHSELLYSDSADGDSLLAQLDPARLTG 236 + G +V+ + Q L + + +L ++ S S DS L+ RLTG Sbjct: 212 IRGTLVIMIDGQQLQEMFRQIESANDSEIYILDKERGVIASSS---DSELSAQVTERLTG 268 Query: 237 GSGYY---MDDSDRIVSYTTSELTGWRFVDITKRSSLLQGMDRIKFIXXXXXXXXXXXXX 293 SG + ++ +D +V++T S+ GW +V + S+++ + ++K + Sbjct: 269 PSGLFKTALNGTDSMVTFTESKEAGWHYVSVMPMDSVMERVAQLKRMALTVFVASLVAGA 328 Query: 294 XISFYLSRRLYRPLQSVISYIXXXXXXXXXXXXXPLPAGDEAGFIRHIYDQLVRNWETLM 353 ++ + + R Y P++ V+ I PA +E YD +++ E + Sbjct: 329 AVACWFAYRQYSPVKRVVDAILQGKPIQDK------PAANE-------YDFILQTIEGSL 375 Query: 354 TEKRKVDSLLTDNHTAIKEKYLNGLIQG-----DSTDQAAELL---GLRLDFTRFAVLTL 405 E+R + L I+ +L+ LI+G + DQ L G+ +FAV+ + Sbjct: 376 VEQRHLRERLFRQTPVIRADFLSRLIRGYIDPDHAGDQGGPTLATMGIHFASDKFAVIIV 435 Query: 406 ELEE-----PYPV-KGPDGIQFYLFRYGLMEELGADIDG---EIFAKDDKR--TVILLNV 454 + + P P +G I+F ++ +G DI + FA D +R IL+N Sbjct: 436 QAVDITRLSPEPSEQGWTQIRF------IISNIGTDIANSGHQGFAVDMERDRVAILVNF 489 Query: 455 -PAEEDD---FPLEQAKRLKQLLLTRYSLNVTIAVSRNYSGEQSVCSAYEDTLEALNLKM 510 P EE + F E A+RL ++L R+ ++VTIAVS ++G ++ SAY + + AL+ +M Sbjct: 490 HPVEEAEAQLFLHEIAERLLRVLEDRFHISVTIAVSSVHTGNGTIGSAYLEAMAALDYRM 549 Query: 511 YIGKGEILPYGILGDWKSQEEAYYYPYELETKLLQALLQTDKEQCFGAIRQI-----TRT 565 + G+ I+ +G + D K YYYP E ET+L+ + D E + I Sbjct: 550 FSGRNSIIHFGHVRDIKHH---YYYPIEFETQLVNHVRSGDTENVAKLLDNIYTMNFKSA 606 Query: 566 AIDRKLGKANIQQLFFQLSGEIMKTLVQTRGDMSAVFGDRPAYADVLS----------RA 615 + +LG+ LFF + +K L T D ++ G P++ V +A Sbjct: 607 GMTPELGRC----LFFNIISTFLKILNLTNTDHESLLG--PSFDPVKHIFGCSTSDEMQA 660 Query: 616 ET--LPDMEECLLDMCGRIIAYHKEKRSKMTDVTLQLATD---YMDVNF-NKNISVDTVA 669 ET L D CL +H E +D ++QL D ++D N + N+ + +A Sbjct: 661 ETKRLYDKLTCL---------FHTEH----SDHSIQLQQDMMAFIDRNLTDYNLGLGMIA 707 Query: 670 EHVQRSSSYLSRIFKESTGMTINDYLIQLRIKRAMELL-QLDLTIEEICRDVGYANVSYF 728 +H + Y+S FK+ I DY+ + RI++A L+ Q +LT ++ + VGY N F Sbjct: 708 DHFGMTPQYISSFFKKMNRCNITDYITRARIEKAKTLMEQSELTNAQLAQLVGYTNDVVF 767 Query: 729 NKIFKARTGQTPGQYR 744 + FK G TPG+YR Sbjct: 768 IRAFKKLEGVTPGKYR 783 >B1DB60.1 B1DB60_9BACL Transcriptional regulator, AraC family Length = 788 Score = 146 bits (368), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 168/690 (24%), Positives = 298/690 (43%), Gaps = 61/690 (8%) Query: 100 SPYIDSIYLYYAPLELVLTSRPEIRTSPIST--FADRSWLEVWKQQSDNRTLWLTGRMDG 157 SPYI+SIY+YYA + V ++ P+ + D +WL ++ S W Sbjct: 117 SPYIESIYVYYAASDKVQSAL----IGPVKSGETEDLNWLPFYRGMSRTEGKWFVRNY-- 170 Query: 158 FEPDQ------PAASLLQKMPLIGQ-VNGAIVMNLKLQLLFDDYLSHYHNKKGATLVLGP 210 PD+ +L++ P V GAIV+N+ Q LF + ++ P Sbjct: 171 --PDENKNLSETQVTLIRTTPWASSPVRGAIVVNMNQQALFQIPSFRLMRQGEEIWMVSP 228 Query: 211 HSELLYSDSADGDSLLAQLDPARLTGGSGY-----YMDDSDRIVSYTTSELTGWRFVDIT 265 S L ++ + G + + GS + S+ + +S TGW++VD+ Sbjct: 229 DSTLAFNSNTGGQVPSDEFAIIQNKLGSDISAFTTHFRGSEFSFTAVSSPYTGWKYVDLI 288 Query: 266 KRSSLLQGMDRIKFIXXXXXXXXXXXXXXISFYLSRRLYRPLQSVISYIXXXXXXXXXXX 325 SSL + I+ +FYL+ R+Y P+ S++ + Sbjct: 289 PTSSLYKSSKEIQNFMLILMAFSILAAVLAAFYLTLRIYSPIHSLVQMVNNKKDWRSAV- 347 Query: 326 XXPLPAGDEAGFIRHIYDQLVRNWETLMTEKRKVDSLLTDNHTAIKEKYLNGLIQGDST- 384 PL E L + T+ + +++S L +N +++ +L LI + Sbjct: 348 --PLHEQSEMAM-------LFSAFITMKEQGAEMESQLKENWPVLQQSFLQQLIHERTNL 398 Query: 385 --DQAAELLGLRLDFTR--FAVLTLELEEPYP-VKGPDGIQFYLFRYGLMEELGADIDGE 439 ++ A+ +L +R F V+ + ++ + + L RY + +L ++ G+ Sbjct: 399 HEERFAKFEYYQLPVSREGFFVMVIRIDNYHGYINAYGSFDQSLIRY-FIAKLAGELTGQ 457 Query: 440 IFA----KDDKRTVILLNVP----AEEDDF--PLEQAKRLKQLLLTRYSLNVTIAVSRNY 489 + + R +IL+ P +ED F E A R++ + +L V+I + + Sbjct: 458 LCLSYPLHTESRDIILICNPERSMVQEDFFRETPELAGRIQAAVNEYLNLTVSIGIGQLK 517 Query: 490 SGEQSVCSAYEDTLEALNLKMYIGKGEILPYGILGDWKSQEEAYYYPY-ELETKLLQALL 548 + +Y + E L + + G G I P + + K ++ EL+ ++L + Sbjct: 518 PDAGDISESYREAFEGLESRAFKGYGSIAPSWLASEKKPGDQLLIRKLAELKREILLLIR 577 Query: 549 QTDKEQCFGAIRQITRTAIDRK-LGKANIQQLFFQLSGEIMKTLVQTRGDMSAVFGDRPA 607 + E+ +R++ A + L IQ +FQL E+ V D+ + Sbjct: 578 EEPSEKFEEELRKLEEVAEGAEGLPFPLIQHAYFQLMIEVYHRSV----DLGLPLHNDNE 633 Query: 608 YA---DVLSRAETLPDMEECLLDMCGRIIA-YHKEKRSKMTDVTLQLATDYMDVNFNKNI 663 A + L R ET+ D+ + D + EKRS V Q+ Y+ NF+K I Sbjct: 634 LAMLQETLLRMETVDDVALAVQDYIRETNRRFCAEKRSGPESVAKQILA-YIQNNFDKEI 692 Query: 664 SVDTVAEHVQRSSSYLSRIFKESTGMTINDYLIQLRIKRAMELLQL-DLTIEEICRDVGY 722 S+ +A+ +Q SY SR+FK+ +T DY+I LR+++ ELL+ +LT+++I VGY Sbjct: 693 SLGGIADQLQLDPSYASRLFKQEISVTFMDYVISLRLEKTKELLKTSELTVKDIGASVGY 752 Query: 723 ANVSYFNKIFKARTGQTPGQYRQQQAADRL 752 AN FN+IFK G TPG+YR A +L Sbjct: 753 ANQRSFNRIFKKYEGMTPGEYRDIHAPKKL 782 >B3KHE9.1 B3KHE9_9BACI Helix-turn-helix-domain containing protein AraC type Length = 790 Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 188/803 (23%), Positives = 347/803 (43%), Gaps = 97/803 (12%) Query: 1 MFVKLLLSLTAIAVITVILISTVTYSISADNSIQNAIAYNESILTQQQELIHKELTAIKY 60 +F+++L+S + ++ ILI V Y+ NA N +L Q + I I+ Sbjct: 17 LFIRMLVS-NCLLLLVPILIWFVFYTNIEHIMKSNAERSNLGMLEQMRLNIDSHFKEIEQ 75 Query: 61 AASGMITTQSYLYHTNGSGKLSVSSMIDLSNFVEAQKKISPYI--DSIYLYYAPLELVLT 118 + +I Y + K +S L F K+ + D +Y +Y L+ + Sbjct: 76 LSHQIILNPKLRYLLDTENK-DLSERYHLVQFTRDYLKMHSRMTKDFVYDFYIFLDRSDS 134 Query: 119 S-RPEIRTSPISTFADRSW------LEVWKQQ--SDNRTLWL---TGRMDGFEPDQP--A 164 +P + T F D+ + E W++Q S + +L T + +G+ D P Sbjct: 135 VIKPNLVTDS-HNFYDKYYRFEHLTYEEWRKQMTSYHSQTYLPSSTLQRNGYLKDDPMQV 193 Query: 165 ASLLQKMPLIGQVNGAIVMNLKLQLLFDDYLSHYHNKK------GATLVLGPHSELLYSD 218 + +Q +P+ N M L +L D+ H ++ + ++ + EL+ Sbjct: 194 ITFMQSLPVEETSN----MKGNLTVLIDETKIHEMTRQIESANGSSVYIVNQNHELI--S 247 Query: 219 SADGDSLLAQLDPARLTGGSG---YYMDDSDRIVSYTTSELTGWRFVDITKRSSLLQGMD 275 S G S L+ L SG Y ++ D VS+TTS GW ++ + + LQ + Sbjct: 248 STPGASPLSNSILNELKSNSGLRNYNLNGQDVTVSFTTSGQVGWYYIAVMPLNVYLQKVK 307 Query: 276 RIKFIXXXXXXXXXXXXXXISFYLSRRLYRPLQSVISYIXXXXXXXXXXXXXPLPAGDEA 335 +++ + ++ ++ R Y P++ +I I PA +E Sbjct: 308 QMEHLALWLLLLCILAGSAAAYGIAYRNYFPIKRMIEAIQAGKSHPRK------PAVNEF 361 Query: 336 GFIRHIYDQLVRNWETLMTEKRKVDSLLTDNHTAIKEKYLNGLIQG-----DSTDQAAEL 390 +I + + +W+ E+R + + LT ++ YL+ ++QG + Q+ E Sbjct: 362 DYI---LEMMKISWD----EERHIKNKLTQQLPILRSNYLHRVLQGYFEPPEQMKQSLEF 414 Query: 391 LGLRLDFTRFAVLTLELEEPYPVKGPDGI--QFYLFRYGLMEELGADI--DGEIFAKDD- 445 +G+ F F V+ +++++ P+ Q+ L R+ ++ L D +G D Sbjct: 415 MGIHFPFPHFIVILVQVDDMTRF-APNQSEKQWALVRF-IISNLAEDTVYEGHTIHTIDL 472 Query: 446 --KRTVILLNVPAEEDDFPLEQAKR----LKQLLLTRYSLNVTIAVSRNYSGEQSVCSAY 499 R +L+N+ ++ D P + K L ++L TR+ L ++IA+S + G+ + AY Sbjct: 473 EKDRLALLVNLLPDQMDHPTCRVKDIVSGLHRMLETRFKLEISIAISGVHKGQHQIGEAY 532 Query: 500 EDTLEALNLKMYIGKGEILPYGILGDWKSQEEAYYYPYELETKLLQALLQTDKEQCFGAI 559 + AL +M G+ Y D + ++ YYYP E E +L+ + D EQ + Sbjct: 533 LEAAAALEYRMVNGQLSTFYYH---DIRQKKLQYYYPVETELQLINCIRSGDTEQVVQLL 589 Query: 560 -----RQITRTAIDRKLGKANIQQLFFQLSGEIMKTLVQ----------TRGDMSAVFGD 604 R +I +LG+ L F L+G +++ + T GD+ V Sbjct: 590 TQLFDRNFRDESITPELGRC----LLFSLAGTLLRIMASDSDTLAYRKLTEGDIHPV--- 642 Query: 605 RPAYADVLSRAETLPDMEECLLDMCGRIIAYHKEKRSKMTD-VTLQLATDYMDVNFNKNI 663 L +T +M E D+ K +RS + + LQ+ T + N+ Sbjct: 643 -----RFLLSCKTTDEMFEKAKDLYVSAAESFKLERSDHNEQLLLQIQTCIQANYADPNM 697 Query: 664 SVDTVAEHVQRSSSYLSRIFKESTGMTINDYLIQLRIKRAMELLQ-LDLTIEEICRDVGY 722 S++ V+EH+Q + Y+S+ FK +G NDYL +R+ A +L+ LT +I + VGY Sbjct: 698 SLNLVSEHLQITPQYISQFFKRVSGQNFNDYLTVVRMDHAKKLMSDPGLTNAQIAKMVGY 757 Query: 723 ANVSYFNKIFKARTGQTPGQYRQ 745 + + F ++FK G TPG+YR+ Sbjct: 758 TSDTVFIRVFKKVEGITPGKYRE 780 >B1D7I4.1 B1D7I4_9BACL Transcriptional regulator, AraC family Length = 787 Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 182/796 (22%), Positives = 339/796 (42%), Gaps = 74/796 (9%) Query: 1 MFVKLLLSLTAIAVITVILISTVTYSISADNSIQNAIAYNESILTQQQELIHKELTAIKY 60 + V L+S A+ + ILIS + YS S+ N+S+L Q I ++ +K Sbjct: 13 IIVTWLISYCAVLFVP-ILISLIVYSQSSAALRSEIHRANDSLLKQVGYTIDNQVDQMK- 70 Query: 61 AASGMITTQSYLYHTNGSGKLSVSSMIDLSNFV-EAQKKISPY--IDSIYLYYAPLELVL 117 + +T + L S + + D V E Q + Y ID Y+ + VL Sbjct: 71 RLTMELTWNARLQTLMYSSRTEADAQFDAYQLVKEFQTYQTSYASIDEFYVTWEREHAVL 130 Query: 118 TSRPEIR--TSPISTFAD--RSWLEVW---KQQSDNRTLWLTGRMDGFEPDQPAASLLQK 170 S +R + +T D R E W + S++ L MD Q + + + Sbjct: 131 RS-GNVRDMKTAFATLHDTGRMSYEDWLAAVETSEHNQFTLLPLMDA-GATQSSIAYITH 188 Query: 171 MP--LIGQVNGAIVMNLKLQLLFDDYLSHYHNKKGATLVLGPHSELLYSDSADGDSLLAQ 228 +P L G+ G +V+ L + S G L+L ++E+L S+ Sbjct: 189 LPKDLNGRQAGTVVVMSDLARFQNAIKSISGFSGGYVLILNRNNEVLLSNLPKKQGEEVI 248 Query: 229 LDPARLTGGSGY--YMDDSDRIVSYTTSELTGWRFVDITKRSSLLQGMDRIKFIXXXXXX 286 L R +GG M D + Y S ++ ++ + S Q + ++ + Sbjct: 249 LQKVR-SGGEEMPTSMKSGDSEIFYLQSSVSDLKYALVIPSSIYWQKAEYVRKLTLVSVL 307 Query: 287 XXXXXXXXISFYLSRRLYRPLQSVISYIXXXXXXXXXXXXXPLPAGDEAGFIRHIYDQLV 346 ++++ RR Y P+Q ++ + +E FI+ Sbjct: 308 ISVMGAGVLTWFFMRRNYSPIQKLVESLTDKNNEEEHTEW------NELNFIQ------- 354 Query: 347 RNWETLMTEKRKVDSLLTDNHTAIKEKYLNGLIQG--DST---DQAAELLGLRLDFTRFA 401 R +EK + L +H ++ L+ L++G DS ++A + + +A Sbjct: 355 RAVSRTRSEKDNIAMQLQMHHNVLRSNMLSRLLKGRLDSPIPYEEAFKTYRMEQISDDYA 414 Query: 402 VLTLELE------EPYPVKGPDG------IQFYLFRYGLMEELGADIDGEIF-AKDDKRT 448 V+ +E E P G D +QF + ++EEL D + A+ D Sbjct: 415 VILFVIENDESLYEKLP--GIDDNERRRFLQFII--SNVVEELAGRYDHAGYVAEMDDMM 470 Query: 449 VILLNVPA---EEDDFP--LEQAKRLKQLLLTRYSLNVTIAVSRNYSGEQSVCSAYEDTL 503 V L+N+ +E+ + L + Q L RY +++T+A+S +S + +AY + + Sbjct: 471 VCLVNLSCGSGDEEQYKKDLHEIATEAQRFLKRYDMDLTVAISGKHSALPGIAAAYSEAV 530 Query: 504 EALNLKMYIGKGEILPYGILGDWKSQ--EEAYYYPYELETKLLQALLQTDKEQCFGAIRQ 561 +A+ KM +GK I+ Y + S + YYYP + E +L+ + D EQ + + Sbjct: 531 DAMEYKMVLGKKGIIAYDDIRKTPSDAVQFGYYYPLQAEQQLINLIKSGDFEQASAFMNE 590 Query: 562 ITRTAIDRKLGKANIQQLF-FQLSGEIMKTLVQTRGDMSAVFGDRPAYADVLSRAETLPD 620 IT + + + + F F L G ++K + + +V D P + + + +T+ + Sbjct: 591 ITERNFRQPMMNLTLAKCFMFNLVGTMVKAINELGDGKGSVLNDNPNWMNSIMACDTVQE 650 Query: 621 MEECLLDMCGRIIAYH---------KEKRSKMTDVTLQLATDYMDVNF-NKNISVDTVAE 670 M + L + + A+ E+ + D++ ++A Y+ N+ + N++V+T+ E Sbjct: 651 MRQELHALLRDVCAFASTRLESNMTHERAESIRDLSARVA-GYIGENYGDSNMNVNTIGE 709 Query: 671 HVQRSSSYLSRIFKESTGMTINDYLIQLRIKRAM-ELLQLDLTIEEICRDVGYANVSYFN 729 H SYLS++FK TG + DYL + RI A + +L ++ E+ + VGY + + F Sbjct: 710 HFDLKGSYLSKLFKTQTGEGLLDYLHKYRIAEAKRRMTELQESVNEVSKAVGYNDAATFI 769 Query: 730 KIFKARTGQTPGQYRQ 745 ++FK G TPG+Y++ Sbjct: 770 RVFKKYEGITPGKYKE 785 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.135 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 4,091,579,354 Number of extensions: 165042277 Number of successful extensions: 435325 Number of sequences better than 1.0e-05: 4006 Number of HSP's gapped: 437330 Number of HSP's successfully gapped: 4008 Length of query: 761 Length of database: 3,060,696,203 Length adjustment: 144 Effective length of query: 617 Effective length of database: 1,704,070,043 Effective search space: 1051411216531 Effective search space used: 1051411216531 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 135 (56.6 bits)