BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0517.0004.p (289 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DB35.1 B1DB35_9BACL Binding-protein-dependent transport system... 472 e-131 B3KCR9.1 B3KCR9_9BACI Binding-protein-dependent transport system... 307 6e-82 B1DB83.1 B1DB83_9BACL Binding-protein-dependent transport system... 304 5e-81 B3KJV4.1 B3KJV4_9BACI Binding-protein-dependent transport system... 297 9e-79 B3KKB5.1 B3KKB5_9BACI Binding-protein-dependent transport system... 296 2e-78 >B1DB35.1 B1DB35_9BACL Binding-protein-dependent transport systems inner membrane component Length = 299 Score = 472 bits (1214), Expect = e-131, Method: Compositional matrix adjust. Identities = 247/277 (89%), Positives = 270/277 (97%) Query: 13 VFKYGPLYGVVIAFKDFKVVDGIWGSPWVGFQHFQELFQSSDFYRLLKNTLLLNFYQLVF 72 +FKYGPLYGV+IAFKDFKVVDGIWGSPWVG QHFQELFQ+SDFYRLLKNTLLLN Y L+F Sbjct: 23 IFKYGPLYGVIIAFKDFKVVDGIWGSPWVGLQHFQELFQNSDFYRLLKNTLLLNLYLLIF 82 Query: 73 AFPAPIILAILLNEVRSRYFQRFIQTTMYLPHFVSWVIMSGLLIYFLSPTTGIMADIMGW 132 AFPAPIILA+LLNEVRSRYFQRFIQ TMYLPHFVSWVIMSGL+IYFLSPTTG++A+IMGW Sbjct: 83 AFPAPIILALLLNEVRSRYFQRFIQMTMYLPHFVSWVIMSGLIIYFLSPTTGVLAEIMGW 142 Query: 133 FGKEPIFFMGKKEYFRSIVVGSSILKDLGWGSIIYFAALSGINPEIQESAIIDGANRWQR 192 FG EP+F+MGKKEYFRSIVV S+ILKDLGWGSIIYFAAL+GINPE+QESAIIDGANRWQR Sbjct: 143 FGVEPVFYMGKKEYFRSIVVISAILKDLGWGSIIYFAALTGINPELQESAIIDGANRWQR 202 Query: 193 IIRINVPSIMPTISIMFILSLGGFLSANFEQIINLLNPVTFETGDVIDTYVYRVGLQQFQ 252 +I+IN+PSIMPTI+IMFILSLGGFLSANFEQIINLLNPVTFETGDVIDTYVYRVGLQQFQ Sbjct: 203 MIKINIPSIMPTIAIMFILSLGGFLSANFEQIINLLNPVTFETGDVIDTYVYRVGLQQFQ 262 Query: 253 YSYTAAIGLFKSLVGLVLILGANLTVKKLSKGENGLW 289 YSYTAAIGLFKSLVGL+LILGANL V+K+S+GE+GLW Sbjct: 263 YSYTAAIGLFKSLVGLLLILGANLLVRKMSRGESGLW 299 >B3KCR9.1 B3KCR9_9BACI Binding-protein-dependent transport systems inner membrane component Length = 320 Score = 307 bits (787), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 138/274 (50%), Positives = 208/274 (75%), Gaps = 1/274 (0%) Query: 13 VFKYGPLYGVVIAFKDFKVVDGIWGSPWVGFQHFQELFQSSDFYRLLKNTLLLNFYQLVF 72 +FKY PL G VIAF+++ + G+ GSPWVG +HF +FQ DF ++L+NTLLL Y ++F Sbjct: 46 LFKYVPLMGSVIAFQNYNLFAGVTGSPWVGLEHFGRMFQHYDFLKILRNTLLLGTYDILF 105 Query: 73 AFPAPIILAILLNEVRSRYFQRFIQTTMYLPHFVSWVIMSGLLIYFLSPTTGIMADIMGW 132 AF API+LA+LLNEVR +++ +QT Y PHF+SWVI+SG+ + LSP++GI+ ++GW Sbjct: 106 AFTAPIVLALLLNEVRQVVYKKIVQTIFYAPHFLSWVIVSGIFVGILSPSSGIVNVVLGW 165 Query: 133 FGKEPIFFMGKKEYFRSIVVGSSILKDLGWGSIIYFAALSGINPEIQESAIIDGANRWQR 192 FG EPI+F+G+ Y R+++VGS + +D+GWG+IIY AAL+GINP++ E++ IDGA RW++ Sbjct: 166 FGIEPIYFLGEDSYIRTVLVGSGLWRDVGWGTIIYLAALAGINPDLYEASEIDGAGRWRQ 225 Query: 193 IIRINVPSIMPTISIMFILSLGGFLSANFEQIINLLNPVTFETGDVIDTYVYRVGLQQFQ 252 + I +P+++P I+I+F+L +G F+ FE++ NP+ ++ +++DTY+Y+ GLQQ Q Sbjct: 226 TLSITLPALLPVITILFLLKIGDFMDYGFERVFVFQNPLNIQSSEILDTYIYKAGLQQLQ 285 Query: 253 YSYTAAIGLFKSLVGLVLILGANLTVKKLSKGEN 286 YSY AIG+FKS+VGL LI AN T+ K + GE+ Sbjct: 286 YSYATAIGVFKSVVGLFLIAIAN-TISKKATGES 318 >B1DB83.1 B1DB83_9BACL Binding-protein-dependent transport systems inner membrane component Length = 322 Score = 304 bits (779), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 148/277 (53%), Positives = 206/277 (74%), Gaps = 3/277 (1%) Query: 13 VFKYGPLYGVVIAFKDFKVVDGIWGSPWVGFQHFQELF-QSSDFYRLLKNTLLLNFYQLV 71 +F YGP+YG++IAFKD+ V G W SPW F +F LF QS +F R+LKNT++++ +V Sbjct: 47 IFCYGPMYGILIAFKDYSPVLGTWDSPWNKFAYFDYLFNQSPEFPRILKNTIIISGLNIV 106 Query: 72 FAFPAPIILAILLNEVRSRYFQRFIQTTMYLPHFVSWVIMSGLLIYFLSPTTGIMADIMG 131 FPAPIILA+LLNE+R +F++ Q+ YLPHF SWV++SG++ LSP+TG + I+G Sbjct: 107 CGFPAPIILALLLNELRISWFKKIAQSISYLPHFFSWVVLSGIVFLMLSPSTGPVNYILG 166 Query: 132 WFGKEPIFFMGKKEYFRSIVVGSSILKDLGWGSIIYFAALSGINPEIQESAIIDGANRWQ 191 WFG +PI+F+G YFR +V ++I K++GWG+I+Y AALSGI+ + E+A +DGANRW+ Sbjct: 167 WFGIDPIYFLGDTRYFRFSLVITNIWKEVGWGTIVYLAALSGIDQTLYEAARMDGANRWK 226 Query: 192 RIIRINVPSIMPTISIMFILSLGGFLSANFEQIINLLNPVTFETGDVIDTYVYRVGLQQF 251 + + +PS++P ISIMFILSLGG L+A F+QI NL +P FE GDVIDTYVYR G+ F Sbjct: 227 QTWHVTLPSMLPIISIMFILSLGGILNAGFDQIYNLYSPAVFEVGDVIDTYVYRQGIVNF 286 Query: 252 QYSYTAAIGLFKSLVGLVLILGANLTVKKLSKGENGL 288 Q T A+GLFK++VG+ L+LG N VKK+ G+ G+ Sbjct: 287 QMGLTTAVGLFKNIVGITLVLGTNYIVKKM--GQEGV 321 >B3KJV4.1 B3KJV4_9BACI Binding-protein-dependent transport systems inner membrane component Length = 315 Score = 297 bits (760), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 140/277 (50%), Positives = 209/277 (75%), Gaps = 3/277 (1%) Query: 13 VFKYGPLYGVVIAFKDFKVVDGIWGSPWVGFQHFQELFQSSDFYRLLKNTLLLNFYQLVF 72 VF YGP+YG+++AFKDF + DGIWGS W+GF+HF+ F S F RLL+NT+L+N Y+L+F Sbjct: 42 VFHYGPMYGLLMAFKDFSIADGIWGSEWIGFEHFRNFFNSYYFERLLRNTVLINVYELIF 101 Query: 73 AFPAPIILAILLNEVRSRYFQRFIQTTMYLPHFVSWVIMSGLLIYFLSPTTGIMADIMGW 132 AFPAPIILA+LLNE+RSR F+R +QT YLPHFVS V+++G++ FL+ G++ I+G+ Sbjct: 102 AFPAPIILALLLNEIRSRLFKRTVQTISYLPHFVSIVVVTGIMFDFLA-RDGLVNQILGF 160 Query: 133 FGKEPIFFMGKKEYFRSIVVGSSILKDLGWGSIIYFAALSGINPEIQESAIIDGANRWQR 192 FG E I FM + +FR++ VGS I + +GWGSIIY AA++ I+P + E+A +DGA RW++ Sbjct: 161 FGIESIPFMSEASWFRTLYVGSGIWQGVGWGSIIYLAAIATIDPTLYEAAKMDGAGRWKQ 220 Query: 193 IIRINVPSIMPTISIMFILSLGGFLSANFEQIINLLNPVTFETGDVIDTYVYRVGLQQFQ 252 ++ I +P ++PTI I+FIL++G LS E+++ + +P+T+ET DVI T+VYR G+ + Sbjct: 221 MLHITLPGMLPTIIIIFILNMGSMLSVGSEKVLLMYSPLTYETADVISTFVYRRGVLETD 280 Query: 253 YSYTAAIGLFKSLVGLVLILGANLTVKKLSKGENGLW 289 Y +T A+GLF ++V +L++ AN K++S E+ LW Sbjct: 281 YGFTTAVGLFNAVVSFILLVLANSISKRVS--EHKLW 315 >B3KKB5.1 B3KKB5_9BACI Binding-protein-dependent transport systems inner membrane component Length = 321 Score = 296 bits (757), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 141/273 (51%), Positives = 199/273 (72%), Gaps = 1/273 (0%) Query: 12 IVFKYGPLYGVVIAFKDFKVVDGIWGSPWVGFQHFQELFQSSDFYRLLKNTLLLNFYQLV 71 IVFKY PL G VIAF+D+++ GI GSPWVG +F +F DFY +L+NT ++ FYQLV Sbjct: 48 IVFKYVPLAGSVIAFQDYQIFKGILGSPWVGLDNFGFIFSYQDFYNVLRNTAVIAFYQLV 107 Query: 72 FAFPAPIILAILLNEVRSRYFQRFIQTTMYLPHFVSWVIMSGLLIYFLSPTTGIMADIMG 131 F FPAPI+LA+L NE+R +R +Q+ YLPHF+SWV++ G++ LS G++ + Sbjct: 108 FGFPAPIVLALLFNEIRIMLAKRVVQSMFYLPHFLSWVVVGGIVFELLS-NQGVVNAVRD 166 Query: 132 WFGKEPIFFMGKKEYFRSIVVGSSILKDLGWGSIIYFAALSGINPEIQESAIIDGANRWQ 191 WFG EPI FM ++ YFR IVV SSI K++GWG+IIY AA++GINP + E+A++DGA+RW+ Sbjct: 167 WFGYEPILFMQEERYFRGIVVLSSIWKEVGWGTIIYLAAIAGINPNLYEAAVMDGASRWK 226 Query: 192 RIIRINVPSIMPTISIMFILSLGGFLSANFEQIINLLNPVTFETGDVIDTYVYRVGLQQF 251 + I I +P++ PTI ++F+L +G FL F+QI NLL P+T+ GD+I+TYVYR G+ Q Sbjct: 227 QTIYITLPTMFPTILVLFLLQIGNFLELGFDQIYNLLTPMTYSVGDIIETYVYRAGVLQG 286 Query: 252 QYSYTAAIGLFKSLVGLVLILGANLTVKKLSKG 284 QYS T AIGLF+S++G +L+ N +K +G Sbjct: 287 QYSMTTAIGLFQSVIGFILLWIFNRLARKTDQG 319 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.145 0.450 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,654,392,821 Number of extensions: 68034035 Number of successful extensions: 225957 Number of sequences better than 1.0e-05: 3851 Number of HSP's gapped: 223831 Number of HSP's successfully gapped: 3852 Length of query: 289 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 155 Effective length of database: 1,798,280,193 Effective search space: 278733429915 Effective search space used: 278733429915 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 130 (54.7 bits)