BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0517.0001.p (272 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DB37.1 B1DB37_9BACL Ig domain protein group 2 domain protein 297 5e-79 C4BJI7.1 C4BJI7_9PSEU Glucose/sorbosone dehydrogenase 122 3e-26 B3K728.1 B3K728_9BACI Ig domain protein group 2 domain protein 108 3e-22 B3KJV2.1 B3KJV2_9BACI Putative uncharacterized protein 94 2e-17 Q9K5X4.1 Q9K5X4_BACHD BH3963 protein 92 6e-17 >B1DB37.1 B1DB37_9BACL Ig domain protein group 2 domain protein Length = 1517 Score = 297 bits (761), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 146/265 (55%), Positives = 187/265 (70%) Query: 1 VGGFSAMWIDDVKFTMIDRXXXXXXXXXXXXLPDGSDGWYTHPVTVELKASDTDSGVTDT 60 VGGFS W DDVKFT+IDR PDG+ WY+ PVTV+L A D+ +GV T Sbjct: 1246 VGGFSEFWFDDVKFTLIDRTAPVTAAAMNPVQPDGTGDWYSKPVTVDLSAIDSGTGVAGT 1305 Query: 61 VYSVNGGTDWLPYQGPVTFSRDGRYSVQYRSVDSAGNTGDIQTLSFKLDGSAPELTVXXX 120 YS +GG WLPYQ +TF+ DG YS+ YRSVD+AGN D +T+SFKLD S PE ++ Sbjct: 1306 EYSTDGGATWLPYQNQLTFTDDGDYSLLYRSVDAAGNREDNKTISFKLDTSGPETSITGL 1365 Query: 121 XXXXXXXXETLTLSWTAADVISGVADGKTAALLDSEAVEQGASVPLYTLDLGSHTLAVSA 180 ET+ LSW +D +SGV +GKT A LD + V+QGA++PLYTL GSHT VS Sbjct: 1366 EEKAYANSETVNLSWAVSDTVSGVDEGKTTAQLDGQTVQQGAAIPLYTLAAGSHTFTVSV 1425 Query: 181 SDGAGNTQERTVTFSTYADVHSLKALVSLFRQKSWIDNHGIANSLSTKLDHGQVEAFIHQ 240 +D AGNT+E VTF+ YAD+ SLK LV+ F + +WIDN GIANSL+ KL++G ++AFI+ Sbjct: 1426 TDLAGNTRESKVTFTAYADISSLKELVAQFYELNWIDNQGIANSLTKKLENGSLDAFINH 1485 Query: 241 VQAQNGKHIQSEAASYLLRDANDIL 265 V+AQ+GKHIQ+EAA+YLLRDAN +L Sbjct: 1486 VEAQSGKHIQAEAAAYLLRDANYVL 1510 >C4BJI7.1 C4BJI7_9PSEU Glucose/sorbosone dehydrogenase Length = 1505 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 76/177 (42%), Positives = 106/177 (59%), Gaps = 4/177 (2%) Query: 35 GSDGWYTHPVTVELKASDTDSGVTDTVYSVNGGTDWLPYQGPVTFSRDGRYSVQYRSVDS 94 G++GW+ V V L A+D SGV YS++GG DW Y PV S DG +++ YR+VD Sbjct: 1255 GANGWHNGEVGVTLTATDEGSGVERIEYSLDGG-DWTTYTEPVVISGDGEHTMLYRAVDK 1313 Query: 95 AGNTGDIQTLSFKLDGSAPELTVXXXXXX-XXXXXETLTLSWTAADVISGVADGKTAALL 153 AGN + + ++ ++DG+AP + + E LT+SW A D SGV AA L Sbjct: 1314 AGNVENDKAVTIRIDGTAPTVMIAGVADGFVYGDAEELTISWEARDGTSGVE--SAAAEL 1371 Query: 154 DSEAVEQGASVPLYTLDLGSHTLAVSASDGAGNTQERTVTFSTYADVHSLKALVSLF 210 D EA+E G +VPLY LDLG H+L VSA+D AGNT E T+TF++ + +L+ F Sbjct: 1372 DGEALESGTTVPLYPLDLGEHSLTVSATDKAGNTAEHTLTFTSTTSFDDVASLIRRF 1428 >B3K728.1 B3K728_9BACI Ig domain protein group 2 domain protein Length = 1071 Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 68/189 (35%), Positives = 95/189 (50%), Gaps = 7/189 (3%) Query: 74 QGPVTFSRDGRYSVQYRSVDSAGNTGDIQTLS-FKLDGSAPELTVXXXXXXXXXXXETLT 132 G VT +GR + + D GD Q S +D +APE+T+ Sbjct: 883 HGIVTAEGEGRAVITATADD-----GDFQASSHITVDWTAPEITINQVASSEFNTG-VFQ 936 Query: 133 LSWTAADVISGVADGKTAALLDSEAVEQGASVPLYTLDLGSHTLAVSASDGAGNTQERTV 192 + AD +SG+ KT +LD + + +PLY +LG+HT + A D AGNT ++V Sbjct: 937 PEFEMADTLSGIDQAKTEVMLDGKVITDLMDIPLYKFELGTHTFTIKAVDLAGNTSTQSV 996 Query: 193 TFSTYADVHSLKALVSLFRQKSWIDNHGIANSLSTKLDHGQVEAFIHQVQAQNGKHIQSE 252 F SL+ LV F + I+N GIANSL KL + +FI +V AQ GK I +E Sbjct: 997 DFQVKTSYASLEELVQRFADEGTINNKGIANSLLKKLQKQNLSSFISEVHAQKGKFISTE 1056 Query: 253 AASYLLRDA 261 A YL+RDA Sbjct: 1057 TAEYLIRDA 1065 >B3KJV2.1 B3KJV2_9BACI Putative uncharacterized protein Length = 1078 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/218 (30%), Positives = 96/218 (44%), Gaps = 16/218 (7%) Query: 62 YSVNGGTDWLPYQGPVTFSRDGRYSVQYRSVDSAGNTGDIQTLSFKLDGSAPELTVXXXX 121 Y + W Y P+ +G+ ++ R+ +G T D + + K+D + PE+T Sbjct: 861 YKIGSEGKWTDYTAPILVEAEGQTTIHARAAAMSGVTSDEASKTVKIDRTGPEITANVTQ 920 Query: 122 XXXXXXXETLTLSWTAADVISGVADGKTAALLDSEAVEQGASVPLYTLDLGSHTLAVSAS 181 E T+S D +SGV+ G L EA E PL TL G HTL ++A Sbjct: 921 SVYQT--ERFTISPHITDALSGVS-GVIVELDGKEAAETLVREPL-TLTAGPHTLRITAE 976 Query: 182 DGAGNTQERTVTFSTYADVHSLKALVSLFRQKSWIDNHGIANSLSTKLDHGQ-------- 233 D AGN R F D L +V +K WIDNHGI SL K+ + Q Sbjct: 977 DAAGNISVREYPFEVVVDQEQLDDIVRAGEEKGWIDNHGITQSLLAKIANLQQHLPGSEA 1036 Query: 234 ----VEAFIHQVQAQNGKHIQSEAASYLLRDANDILGR 267 + + + ++AQ GKH+ A LL D + I R Sbjct: 1037 AEDAITSLENAIKAQQGKHLDFGFAELLLEDIDYIRSR 1074 >Q9K5X4.1 Q9K5X4_BACHD BH3963 protein Length = 995 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 70/236 (29%), Positives = 109/236 (46%), Gaps = 27/236 (11%) Query: 37 DGWYTHPVTVELKASDTDSGVTDTVYSVNGGTDWLPYQGP-VTFSRDGRYSVQYRSVDSA 95 +GWY V +EL+ +D DSGVTDT Y+VN G G + +G Y V Y S+D + Sbjct: 765 NGWYNSTVMIELEPTDADSGVTDTFYTVNNGEQQ---SGQLIVLEEEGIYHVSYWSMDHS 821 Query: 96 GNTGDIQTLSFKLDGSAPELTVXXXXXXXXXXXETLTLSWTAADVISGVADGKTAALLDS 155 GN + + +D +AP +T + + L+ D +SGV DS Sbjct: 822 GNIEEKNQVEVSIDKTAPTITFSIEPNTVFTVDQEVHLTCAIEDQLSGV---------DS 872 Query: 156 EAVEQGASVPLYTLDLGSHTLAVSASDGAGNTQERTVTFSTYADVHSLKALVSLFRQKSW 215 E Y L +G+H +A+D AGN ++T+ D SL +L F + Sbjct: 873 FTCEDTTKFA-YELGVGTHMFTAAATDKAGNHIKKTMEIIIEVDFDSLASLSQQFVELHN 931 Query: 216 IDNH---GIANSL----------STKLDHGQVEAFIHQVQAQNGKHIQSEAASYLL 258 + H G+ + L +T+ Q++AF++QV +Q+GK SE A L+ Sbjct: 932 GEAHIVEGLQSKLVAAKNANEKGNTRARDNQLKAFVNQVNSQSGKAFSSEHAEILI 987 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.313 0.129 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,507,130,023 Number of extensions: 56912832 Number of successful extensions: 104885 Number of sequences better than 1.0e-05: 46 Number of HSP's gapped: 105070 Number of HSP's successfully gapped: 68 Length of query: 272 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 139 Effective length of database: 1,807,701,208 Effective search space: 251270467912 Effective search space used: 251270467912 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 130 (54.7 bits)