BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0515.0017.p (183 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K7F0.1 B3K7F0_9BACI Ribosomal subunit interface protein 312 9e-84 B1DE95.1 B1DE95_9BACL Sigma 54 modulation protein/ribosomal prot... 262 8e-69 B9J5J0.1 B9J5J0_BACCQ Ribosomal subunit interface protein 225 2e-57 Q9K6W6.1 Q9K6W6_BACHD Ribosomal protein S30AE family 213 6e-54 Q72XS8.1 Q72XS8_BACC1 Ribosomal subunit interface protein 210 4e-53 >B3K7F0.1 B3K7F0_9BACI Ribosomal subunit interface protein Length = 188 Score = 312 bits (799), Expect = 9e-84, Method: Compositional matrix adjust. Identities = 155/188 (82%), Positives = 168/188 (89%), Gaps = 5/188 (2%) Query: 1 MQFSIRGQQIEVTDALRDYVDKKLSRLEKYFDAPPTSEGYVTLGVVRGLHTVEVTIPLAG 60 MQF+IRGQQIEVTDAL+DYVDKKLSRL+KYFDAPPTSEGYVTL V+RGLHTVEVTIPL G Sbjct: 1 MQFTIRGQQIEVTDALKDYVDKKLSRLDKYFDAPPTSEGYVTLSVIRGLHTVEVTIPLTG 60 Query: 61 VTLRAEDRSDDMYASIDAVVDKLERQIRKHKTKLNRKFRQEGSLKTLFVE-GAPSSVAVE 119 V LRAEDRSDDMYASIDAVVDKLERQIRKHKTKLNRK +QEG LKTL E GA ++ V+ Sbjct: 61 VVLRAEDRSDDMYASIDAVVDKLERQIRKHKTKLNRKIKQEGGLKTLIAENGAAATSQVD 120 Query: 120 ----EQDYDDLEVVRNKRFTLKPMDVEEAILQMNMVGHNFFVFSNIDTSEVSVVYKRNDG 175 E D D+ EVVR KRFT+KPMDVEEAILQMNMVGHNFFVFSNIDT EV+VVYKR+DG Sbjct: 121 AEQVEYDEDEYEVVRTKRFTMKPMDVEEAILQMNMVGHNFFVFSNIDTQEVNVVYKRDDG 180 Query: 176 KYGLIEQD 183 KYGLIE+D Sbjct: 181 KYGLIERD 188 >B1DE95.1 B1DE95_9BACL Sigma 54 modulation protein/ribosomal protein S30EA Length = 182 Score = 262 bits (670), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 130/184 (70%), Positives = 156/184 (84%), Gaps = 3/184 (1%) Query: 1 MQFSIRGQQIEVTDALRDYVDKKLSRLEKYFDAPPTSEGYVTLGVVRGLHTVEVTIPLAG 60 M++ IRG +I+VT+ALR+Y KK+SRLEKYF+AP SE VTL V +G H VEVTIPL G Sbjct: 1 MKYIIRGHRIQVTEALREYAVKKISRLEKYFEAPA-SETTVTLSVTKGKHAVEVTIPLVG 59 Query: 61 VTLRAEDRSDDMYASIDAVVDKLERQIRKHKTKLNRKFRQEGSLKTLFVEG-APSSVAVE 119 V LRAED+S+DMY+SID VVDKLERQIRKHKTK+NRKFR E +K LF EG + ++V+V Sbjct: 60 VMLRAEDKSEDMYSSIDVVVDKLERQIRKHKTKMNRKFRHESGVKALFKEGLSQTAVSVM 119 Query: 120 EQDYDDLEVVRNKRFTLKPMDVEEAILQMNMVGHNFFVFSNIDTSEVSVVYKRNDGKYGL 179 +++ D+LE+VR KRF LKPMDVEEAILQMNMVGHNFFVFSNID EV+VVYKR+DGKYGL Sbjct: 120 DEE-DELELVRTKRFMLKPMDVEEAILQMNMVGHNFFVFSNIDNKEVNVVYKRSDGKYGL 178 Query: 180 IEQD 183 IEQ+ Sbjct: 179 IEQE 182 >B9J5J0.1 B9J5J0_BACCQ Ribosomal subunit interface protein Length = 180 Score = 225 bits (573), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 117/182 (64%), Positives = 143/182 (78%), Gaps = 5/182 (2%) Query: 1 MQFSIRGQQIEVTDALRDYVDKKLSRLEKYFDAPPTSEGYVTLGVVRGLHTVEVTIPLAG 60 M+F+IRG+ IEVT AL++YV+KKLS+LE+YFD P E V L V VEVTIP Sbjct: 1 MKFNIRGENIEVTPALKEYVEKKLSKLERYFDTFP--EIKVNLKVYSDKQRVEVTIPFTD 58 Query: 61 VTLRAEDRSDDMYASIDAVVDKLERQIRKHKTKLNRKFRQEGSLKTLFVEGAPSSVAV-E 119 + LRAE+ + DMYA+ID VVDKLERQIRKHKTK+NRK R++GS+KT F+ P +VAV + Sbjct: 59 LLLRAEETNSDMYAAIDLVVDKLERQIRKHKTKVNRKLREKGSMKTNFI--LPEAVAVLD 116 Query: 120 EQDYDDLEVVRNKRFTLKPMDVEEAILQMNMVGHNFFVFSNIDTSEVSVVYKRNDGKYGL 179 E + D LE+VR KRF LKPMDVEEAILQM+M+GHNFFVF+N DT+E +VVY R DGKYGL Sbjct: 117 EVEEDQLELVRTKRFDLKPMDVEEAILQMDMLGHNFFVFTNADTNETNVVYGRKDGKYGL 176 Query: 180 IE 181 IE Sbjct: 177 IE 178 >Q9K6W6.1 Q9K6W6_BACHD Ribosomal protein S30AE family Length = 187 Score = 213 bits (542), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 108/189 (57%), Positives = 145/189 (76%), Gaps = 8/189 (4%) Query: 1 MQFSIRGQQIEVTDALRDYVDKKLSRLEKYFDAPPTSEGYVTLGVVRGLHTVEVTIPLAG 60 M F++RG+ +EVT ALR+YV+KK+ +LE+YFD P ++ V + V+ LH +EVTIP++ Sbjct: 1 MIFNVRGENLEVTPALREYVEKKVGKLERYFDTTPVADVNVRMQVLNNLHIIEVTIPMSR 60 Query: 61 VTLRAEDRSDDMYASIDAVVDKLERQIRKHKTKLNRKFRQEGSLKTLF------VEGAPS 114 + LRAE++ DMYA+ID V++KLERQIRKHKTK+NRKFRQEGSLK +F ++G Sbjct: 61 LLLRAEEKHSDMYAAIDLVIEKLERQIRKHKTKVNRKFRQEGSLKYMFKNDLEPMDGM-- 118 Query: 115 SVAVEEQDYDDLEVVRNKRFTLKPMDVEEAILQMNMVGHNFFVFSNIDTSEVSVVYKRND 174 + ++ DDL+VVR KRF LKPMD EEAILQM+M+GHNFFVFSN + + +VVY+R D Sbjct: 119 REEILLEEEDDLQVVRKKRFNLKPMDTEEAILQMDMLGHNFFVFSNAISGDTNVVYRRKD 178 Query: 175 GKYGLIEQD 183 GKYGLIE + Sbjct: 179 GKYGLIEPE 187 >Q72XS8.1 Q72XS8_BACC1 Ribosomal subunit interface protein Length = 180 Score = 210 bits (535), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 113/182 (62%), Positives = 140/182 (76%), Gaps = 5/182 (2%) Query: 1 MQFSIRGQQIEVTDALRDYVDKKLSRLEKYFDAPPTSEGYVTLGVVRGLHTVEVTIPLAG 60 M+F+IRG+ IEVT AL++YV+KKLS+LE+YFD P E V L V VEVTIP Sbjct: 1 MKFNIRGENIEVTPALKEYVEKKLSKLERYFDTFP--EIKVNLKVYSDKQRVEVTIPFTD 58 Query: 61 VTLRAEDRSDDMYASIDAVVDKLERQIRKHKTKLNRKFRQEGSLKTLFVEGAPSSVAVEE 120 + LRAE+ + DMYA+ID VVDKLERQIRKHKTK+NRK R++GS+KT F+ P +VAV + Sbjct: 59 LLLRAEETNSDMYAAIDLVVDKLERQIRKHKTKVNRKLREKGSMKTNFI--LPEAVAVLD 116 Query: 121 QDYDDLEVV-RNKRFTLKPMDVEEAILQMNMVGHNFFVFSNIDTSEVSVVYKRNDGKYGL 179 + +D + R KRF LKPMDVEEAILQM+M+GHNFFVF+N DT+E +VVY R DGKYGL Sbjct: 117 EVEEDELELVRTKRFDLKPMDVEEAILQMDMLGHNFFVFTNADTNETNVVYGRKDGKYGL 176 Query: 180 IE 181 IE Sbjct: 177 IE 178 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.135 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,002,194,073 Number of extensions: 38038999 Number of successful extensions: 118000 Number of sequences better than 1.0e-05: 1220 Number of HSP's gapped: 116486 Number of HSP's successfully gapped: 1221 Length of query: 183 Length of database: 3,060,696,203 Length adjustment: 127 Effective length of query: 56 Effective length of database: 1,864,227,298 Effective search space: 104396728688 Effective search space used: 104396728688 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)