BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0515.0006.p (322 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DE87.1 B1DE87_9BACL Ornithine carbamoyltransferase 480 e-134 B7GM02.1 B7GM02_ANOFW Ornithine carbamoyltransferase 419 e-115 Q8ET05.1 OTC_OCEIH Ornithine carbamoyltransferase EC=2.1.3.3 418 e-115 A4J172.1 A4J172_DESRM Ornithine carbamoyltransferase EC=2.1.3.3 414 e-114 Q2RG66.1 Q2RG66_MOOTA Ornithine carbamoyltransferase EC=2.1.3.3 407 e-112 >B1DE87.1 B1DE87_9BACL Ornithine carbamoyltransferase Length = 318 Score = 480 bits (1236), Expect = e-134, Method: Compositional matrix adjust. Identities = 226/317 (71%), Positives = 271/317 (85%) Query: 5 VKSGAQQIAQQLKGRDLLELNDYSPEEITYLIDLAIELKRKQKSGEVYQPLKGKTIGLIF 64 V + + +A LKGRD L L DY+PEEI YLIDLAI+LK+KQK+GEVYQPLKGKT+G+IF Sbjct: 2 VDTVKEDLAASLKGRDFLMLLDYTPEEIRYLIDLAIDLKKKQKAGEVYQPLKGKTLGMIF 61 Query: 65 EKSSTRTRVSFEVGMYQLGGHALFLSKNDIQLGRGETVGDTAQVMSRYLDGIMIRTFGHD 124 EKSSTRTRVSFEVG+YQLGG LFLS ND+Q+GRGE + DTAQV+SRYLDGIMIRTF H Sbjct: 62 EKSSTRTRVSFEVGIYQLGGQGLFLSGNDLQIGRGEPILDTAQVLSRYLDGIMIRTFAHR 121 Query: 125 KVEDLARYASVPVINGLSDLAHPCQVLADYQTVYEHKGKLKGLKLAYIGDGNNMAHSLLI 184 V +LAR A++PVINGL+DL+HPCQ LADYQT+ EHKG+L+GLKLAYIGDGNN+ HSL++ Sbjct: 122 NVVELARGATIPVINGLTDLSHPCQALADYQTILEHKGRLEGLKLAYIGDGNNVVHSLMM 181 Query: 185 GGAKLGVHVSVAGPEGYEPDAAVVAEAREIAKETGALIVVTRSPQEAVQDADVIYTDVWA 244 G AKLGV +S+A PEGYEPDA ++ ++ + AKETGA I + R P+EA+ DADV+Y+DVWA Sbjct: 182 GAAKLGVDISIATPEGYEPDADLLKQSIDNAKETGARIHLCRDPKEAIADADVVYSDVWA 241 Query: 245 SMGFEAEQLAREAAFKDYQVNEELVKGAKSDYLFLHCLPAHREEEVSTGVIDGPNSVIFD 304 SMG E+EQ RE AF ++QVNE L K AK DYLF+HCLPAHR EEVS GVIDGP+S+IFD Sbjct: 242 SMGQESEQKDRELAFANFQVNEALAKYAKKDYLFMHCLPAHRGEEVSEGVIDGPHSIIFD 301 Query: 305 QAENRLHAQKALMAALM 321 QAENRLHAQKA+MAA+M Sbjct: 302 QAENRLHAQKAIMAAIM 318 >B7GM02.1 B7GM02_ANOFW Ornithine carbamoyltransferase Length = 314 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 207/307 (67%), Positives = 247/307 (80%) Query: 15 QLKGRDLLELNDYSPEEITYLIDLAIELKRKQKSGEVYQPLKGKTIGLIFEKSSTRTRVS 74 QLKG+D L L DYS EEI YL+ LA+ELK KQ++GE Y PL GKT+ +IFEK STRTRVS Sbjct: 8 QLKGKDFLTLADYSKEEIEYLLHLAVELKEKQQNGERYTPLSGKTLAMIFEKPSTRTRVS 67 Query: 75 FEVGMYQLGGHALFLSKNDIQLGRGETVGDTAQVMSRYLDGIMIRTFGHDKVEDLARYAS 134 FEVGM QLGGHAL LS D+Q+GRGET+ DTA+V+S Y+D IMIRTF H+KVE+LA YA+ Sbjct: 68 FEVGMVQLGGHALHLSSRDLQIGRGETIADTARVLSEYVDAIMIRTFEHEKVEELAHYAT 127 Query: 135 VPVINGLSDLAHPCQVLADYQTVYEHKGKLKGLKLAYIGDGNNMAHSLLIGGAKLGVHVS 194 +PVINGL+D HPCQ LAD T+YE KGKL+GLKLAYIGDGNNMAH+L++ AK+G+H + Sbjct: 128 IPVINGLTDDDHPCQALADLLTIYEVKGKLQGLKLAYIGDGNNMAHALMLAAAKVGMHCA 187 Query: 195 VAGPEGYEPDAAVVAEAREIAKETGALIVVTRSPQEAVQDADVIYTDVWASMGFEAEQLA 254 VA P+GYEP AVV EA++IA E+GA IVVT P EA+ DADV+YTDVWASMG EAE Sbjct: 188 VASPKGYEPKEAVVKEAKQIANESGATIVVTNDPYEAIADADVVYTDVWASMGQEAEANE 247 Query: 255 REAAFKDYQVNEELVKGAKSDYLFLHCLPAHREEEVSTGVIDGPNSVIFDQAENRLHAQK 314 R F +QVNE LV+ AK D++FLHCLPAHR EEV+ GVIDG S IF QA NRLHAQK Sbjct: 248 RMHVFAPFQVNEALVQQAKQDFMFLHCLPAHRGEEVTEGVIDGVRSYIFQQAGNRLHAQK 307 Query: 315 ALMAALM 321 AL+ +L+ Sbjct: 308 ALLVSLL 314 >Q8ET05.1 OTC_OCEIH Ornithine carbamoyltransferase EC=2.1.3.3 Length = 322 Score = 418 bits (1075), Expect = e-115, Method: Compositional matrix adjust. Identities = 201/308 (65%), Positives = 246/308 (79%) Query: 14 QQLKGRDLLELNDYSPEEITYLIDLAIELKRKQKSGEVYQPLKGKTIGLIFEKSSTRTRV 73 Q+LKGRD L L DY+ +EI YLIDLA LK++ K G +++PLKGKT+G+IFEKSSTRTRV Sbjct: 13 QELKGRDFLTLADYTKDEINYLIDLADYLKKQHKDGVIFEPLKGKTLGMIFEKSSTRTRV 72 Query: 74 SFEVGMYQLGGHALFLSKNDIQLGRGETVGDTAQVMSRYLDGIMIRTFGHDKVEDLARYA 133 SFE G+YQLGG +FLS DIQ+GRGET+ DTA+V+S YLDGIMIRTF + VE+LA++A Sbjct: 73 SFETGIYQLGGLGIFLSSKDIQIGRGETIADTAKVLSGYLDGIMIRTFAQEDVEELAKHA 132 Query: 134 SVPVINGLSDLAHPCQVLADYQTVYEHKGKLKGLKLAYIGDGNNMAHSLLIGGAKLGVHV 193 S+PVINGL+DL HPCQVLAD QT+ E KGKL G+KL YIGDGNNM HSL++G AK G+H+ Sbjct: 133 SIPVINGLTDLYHPCQVLADLQTIKEVKGKLHGVKLVYIGDGNNMTHSLMLGAAKTGMHM 192 Query: 194 SVAGPEGYEPDAAVVAEAREIAKETGALIVVTRSPQEAVQDADVIYTDVWASMGFEAEQL 253 P+GY P+ V+ +A+ IA + GA+I T AVQ+ADVIYTDVWASMG E EQ Sbjct: 193 VAVTPDGYTPNKEVLTKAKSIANQHGAIIEWTSDIATAVQEADVIYTDVWASMGQEEEQQ 252 Query: 254 AREAAFKDYQVNEELVKGAKSDYLFLHCLPAHREEEVSTGVIDGPNSVIFDQAENRLHAQ 313 RE F++YQVNE L++ AK+D +F+HCLPAHR EEV+ GVIDG SV+F QAENRLHAQ Sbjct: 253 QREKDFENYQVNESLLEKAKTDVIFMHCLPAHRGEEVTAGVIDGKQSVVFQQAENRLHAQ 312 Query: 314 KALMAALM 321 KALM ALM Sbjct: 313 KALMTALM 320 >A4J172.1 A4J172_DESRM Ornithine carbamoyltransferase EC=2.1.3.3 Length = 315 Score = 414 bits (1063), Expect = e-114, Method: Compositional matrix adjust. Identities = 196/312 (62%), Positives = 250/312 (80%) Query: 10 QQIAQQLKGRDLLELNDYSPEEITYLIDLAIELKRKQKSGEVYQPLKGKTIGLIFEKSST 69 ++I LKGRDLL L+DY+ +E+ ++ A +K QK+G + L+GKT+G+IF+KSST Sbjct: 2 EKINDCLKGRDLLTLHDYTVDEVKLILQEAQRIKAMQKAGIPHPYLQGKTLGMIFQKSST 61 Query: 70 RTRVSFEVGMYQLGGHALFLSKNDIQLGRGETVGDTAQVMSRYLDGIMIRTFGHDKVEDL 129 RTRVSFEVGMYQLGG+ALFLS DIQ+GRGE+V DTA+V+SR LDGIMIRTF ++VE+L Sbjct: 62 RTRVSFEVGMYQLGGYALFLSPKDIQMGRGESVADTARVLSRMLDGIMIRTFAQEEVEEL 121 Query: 130 ARYASVPVINGLSDLAHPCQVLADYQTVYEHKGKLKGLKLAYIGDGNNMAHSLLIGGAKL 189 A YA +PVINGL+D HPCQ+LAD+ T+ EHKG+L GLKLAY+GDGNN+AHSLL G AK+ Sbjct: 122 AEYADIPVINGLTDRTHPCQILADFLTIQEHKGQLAGLKLAYVGDGNNIAHSLLYGCAKV 181 Query: 190 GVHVSVAGPEGYEPDAAVVAEAREIAKETGALIVVTRSPQEAVQDADVIYTDVWASMGFE 249 G+ + VA PEGY+PDA +V++A+E A+ TGA + V P A+Q ADV+ TDVWASMG E Sbjct: 182 GMDICVASPEGYQPDAQIVSQAKEDARTTGAKVEVVSDPVVAMQAADVVITDVWASMGQE 241 Query: 250 AEQLAREAAFKDYQVNEELVKGAKSDYLFLHCLPAHREEEVSTGVIDGPNSVIFDQAENR 309 AEQ RE AF YQVN +L AK D++FLHCLPAHR EEV+ +IDGP+SV++D+AENR Sbjct: 242 AEQRERERAFAGYQVNSDLCAHAKPDFIFLHCLPAHRGEEVTAEIIDGPHSVVWDEAENR 301 Query: 310 LHAQKALMAALM 321 LHAQKA+MA L+ Sbjct: 302 LHAQKAVMALLI 313 >Q2RG66.1 Q2RG66_MOOTA Ornithine carbamoyltransferase EC=2.1.3.3 Length = 314 Score = 407 bits (1045), Expect = e-112, Method: Compositional matrix adjust. Identities = 196/311 (63%), Positives = 240/311 (77%) Query: 12 IAQQLKGRDLLELNDYSPEEITYLIDLAIELKRKQKSGEVYQPLKGKTIGLIFEKSSTRT 71 +A LKGRD L L D+S EEI YL+DLA +LK K K E + L GKT+G+IF K STRT Sbjct: 4 LAGSLKGRDFLSLKDFSREEIFYLLDLADDLKAKLKKREPHPLLAGKTLGMIFTKRSTRT 63 Query: 72 RVSFEVGMYQLGGHALFLSKNDIQLGRGETVGDTAQVMSRYLDGIMIRTFGHDKVEDLAR 131 RVSFEVGMYQLGG+ LFL+K+D+QLGRGET+ DTA+V+SRYLDGIMIRT+ H +VE+LA Sbjct: 64 RVSFEVGMYQLGGYPLFLTKDDLQLGRGETIADTARVLSRYLDGIMIRTYSHREVEELAE 123 Query: 132 YASVPVINGLSDLAHPCQVLADYQTVYEHKGKLKGLKLAYIGDGNNMAHSLLIGGAKLGV 191 YAS+PVINGL+D HP Q LAD T+ E KGKL+GL L +IGDGNN+AHSL+ GGAK+G+ Sbjct: 124 YASIPVINGLTDFLHPTQALADIMTIREWKGKLQGLNLTFIGDGNNVAHSLMYGGAKVGL 183 Query: 192 HVSVAGPEGYEPDAAVVAEAREIAKETGALIVVTRSPQEAVQDADVIYTDVWASMGFEAE 251 +V++A P GYEP VV EAR IA G I VT + +EA + AD++YTDVWASMG E E Sbjct: 184 NVTIACPSGYEPMPQVVEEARRIAAGNGCQIAVTNNIKEAAEGADILYTDVWASMGQEDE 243 Query: 252 QLAREAAFKDYQVNEELVKGAKSDYLFLHCLPAHREEEVSTGVIDGPNSVIFDQAENRLH 311 R AF+ YQ+N EL+K AK D + LHCLPAHR EE++ V+DGP S +FD+AENRLH Sbjct: 244 AEKRRQAFRKYQINSELLKLAKPDAMVLHCLPAHRGEEITDEVMDGPQSAVFDEAENRLH 303 Query: 312 AQKALMAALMG 322 A KA+M ALMG Sbjct: 304 AHKAIMVALMG 314 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.134 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,844,205,381 Number of extensions: 76668651 Number of successful extensions: 218165 Number of sequences better than 1.0e-05: 3675 Number of HSP's gapped: 210224 Number of HSP's successfully gapped: 3679 Length of query: 322 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 186 Effective length of database: 1,779,438,163 Effective search space: 330975498318 Effective search space used: 330975498318 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)