BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0514.0021.p
         (109 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1DKD2.1 B1DKD2_9BACL Beta-hydroxyacyl-(Acyl-carrier-protein) de...   167   2e-40
C5D965.1 C5D965_9BACI Beta-hydroxyacyl-(Acyl-carrier-protein) de...   146   6e-34
C1P8T9.1 C1P8T9_BACCO Beta-hydroxyacyl-(Acyl-carrier-protein) de...   145   8e-34
A3I5T2.1 A3I5T2_9BACI (3R)-hydroxymyristoyl ACP dehydratase           144   2e-33
Q8EMB1.1 FABZ_OCEIH (3R)-hydroxymyristoyl-[acyl-carrier-protein]...   144   3e-33

>B1DKD2.1 B1DKD2_9BACL Beta-hydroxyacyl-(Acyl-carrier-protein) dehydratase
           FabZ
          Length = 144

 Score =  167 bits (423), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 81/109 (74%), Positives = 89/109 (81%), Gaps = 2/109 (1%)

Query: 1   VTFNEPYFLGHFSDYPVMPGVLIVEALAQVGGIAMSNVERNNHTIGLLTGIDNCRFKKQV 60
           VT+NEP F+G F  YPVMPG+LIVEALAQVGGI MS+ E   + IGLLTGID CRFKKQV
Sbjct: 38  VTYNEPLFIGQFPSYPVMPGILIVEALAQVGGIVMSDGESTTNKIGLLTGIDKCRFKKQV 97

Query: 61  KPGDQLHLEFEVTRTKGQIVKGTGIATVNNEMVCEAEIMFAFNSIEAFN 109
            PGDQLHLEFEVTR KGQIVKG G ATV+NE+VCE EIMFA   +EA N
Sbjct: 98  NPGDQLHLEFEVTRVKGQIVKGNGKATVDNELVCEVEIMFAL--VEALN 144


>C5D965.1 C5D965_9BACI Beta-hydroxyacyl-(Acyl-carrier-protein) dehydratase
           FabZ
          Length = 145

 Score =  146 bits (369), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 68/104 (65%), Positives = 78/104 (75%)

Query: 1   VTFNEPYFLGHFSDYPVMPGVLIVEALAQVGGIAMSNVERNNHTIGLLTGIDNCRFKKQV 60
           V+ NE +F+GHF +YPVMPGVLIVEALAQVG +AM   E N   +   TGIDNCRFKKQV
Sbjct: 38  VSANESFFVGHFPEYPVMPGVLIVEALAQVGAVAMLKKEENRGRLAFFTGIDNCRFKKQV 97

Query: 61  KPGDQLHLEFEVTRTKGQIVKGTGIATVNNEMVCEAEIMFAFNS 104
           KPGDQL LE E+ R KG I KG G+ATV+ E+VCE EIMFA   
Sbjct: 98  KPGDQLRLEVEIIRAKGPIGKGKGVATVDGELVCETEIMFALGD 141


>C1P8T9.1 C1P8T9_BACCO Beta-hydroxyacyl-(Acyl-carrier-protein) dehydratase
           FabZ
          Length = 141

 Score =  145 bits (367), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 66/104 (63%), Positives = 76/104 (73%)

Query: 1   VTFNEPYFLGHFSDYPVMPGVLIVEALAQVGGIAMSNVERNNHTIGLLTGIDNCRFKKQV 60
           V+ NEP+F GHF  YPVMPGVLIVEALAQVG +AM   E N   + L  GID CRFK+QV
Sbjct: 38  VSGNEPFFAGHFPSYPVMPGVLIVEALAQVGAVAMLKKEENRGKLALFAGIDKCRFKRQV 97

Query: 61  KPGDQLHLEFEVTRTKGQIVKGTGIATVNNEMVCEAEIMFAFNS 104
           KPGDQLHLE E+ R KG + KG  +ATV+ E+ CEAEIMFA   
Sbjct: 98  KPGDQLHLEVEIIRLKGPVGKGKAVATVDGELACEAEIMFALEK 141


>A3I5T2.1 A3I5T2_9BACI (3R)-hydroxymyristoyl ACP dehydratase
          Length = 141

 Score =  144 bits (364), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/104 (67%), Positives = 78/104 (75%)

Query: 1   VTFNEPYFLGHFSDYPVMPGVLIVEALAQVGGIAMSNVERNNHTIGLLTGIDNCRFKKQV 60
           VT NE +F GHF  YPVMPGVLIVEALAQV  + M   E N   +GLL GID CRFKKQV
Sbjct: 38  VTINEEFFNGHFPQYPVMPGVLIVEALAQVSAVIMLTKEGNEGRLGLLAGIDQCRFKKQV 97

Query: 61  KPGDQLHLEFEVTRTKGQIVKGTGIATVNNEMVCEAEIMFAFNS 104
           KPGDQL LE E+TR KG I KG GIATV+ EMVCE E++FAF +
Sbjct: 98  KPGDQLRLEVEITRVKGSIGKGKGIATVDGEMVCEMELVFAFGN 141


>Q8EMB1.1 FABZ_OCEIH (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase
           EC=4.2.1.-
          Length = 140

 Score =  144 bits (363), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 66/103 (64%), Positives = 79/103 (76%)

Query: 1   VTFNEPYFLGHFSDYPVMPGVLIVEALAQVGGIAMSNVERNNHTIGLLTGIDNCRFKKQV 60
           V+ NEP+F GHF +YPVMPGVLI+EALAQ G IA+ N+E N   IG L G+D CRFK+QV
Sbjct: 38  VSVNEPFFQGHFPEYPVMPGVLILEALAQTGAIAVLNIEENKGKIGFLAGVDKCRFKRQV 97

Query: 61  KPGDQLHLEFEVTRTKGQIVKGTGIATVNNEMVCEAEIMFAFN 103
           KPGDQL+L+ E+ R KG I KG GIATV+ E+ CEAEI FA  
Sbjct: 98  KPGDQLNLQVEIIRMKGPIGKGKGIATVDGEVACEAEITFAIK 140


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.321    0.138    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 628,834,204
Number of extensions: 21486128
Number of successful extensions: 49469
Number of sequences better than 1.0e-05: 1471
Number of HSP's gapped: 48487
Number of HSP's successfully gapped: 1472
Length of query: 109
Length of database: 3,060,696,203
Length adjustment: 77
Effective length of query: 32
Effective length of database: 2,335,278,048
Effective search space: 74728897536
Effective search space used: 74728897536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)