BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0514.0017.p (282 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q00753.2 MSMR_STRMU Msm operon regulatory protein 136 2e-30 B3KFN2.1 B3KFN2_9BACI AraC protein arabinose-binding/dimerisation 136 2e-30 B1DE54.1 B1DE54_9BACL Transcriptional regulator, AraC family 132 2e-29 C2H7C6.1 C2H7C6_ENTFC AraC family transcriptional regulator 128 5e-28 B1SDU2.1 B1SDU2_9STRE Putative uncharacterized protein 127 9e-28 >Q00753.2 MSMR_STRMU Msm operon regulatory protein Length = 278 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 90/258 (34%), Positives = 134/258 (51%), Gaps = 8/258 (3%) Query: 27 GHRKCGKDHVVGPRVLETYKMVFVLSGKGYLTQGDHVNKMLKQGDIFILLPGEKHFYYAD 86 G KC + + GP + + Y + F+L GKG LT H L GDIF+L FY AD Sbjct: 23 GSEKCDRGYSFGPTIRDNYVIHFILEGKGKLTINQHTLD-LAAGDIFLLPKDISTFYQAD 81 Query: 87 PEDPWEIMWVSFNGQHIPYYLSLMGLDINHCCLEGIATHTIINKMLLLIQ--ELPEAGDG 144 + PW +W+ F+G L L C G ++ + ++M+ +IQ P Sbjct: 82 LQMPWSYIWIGFSGSKAENILKQSSLFKRFYCHSGRSSK-LFSQMMTIIQFANTPLTSVN 140 Query: 145 QLLCISYLLHIFH-LIEQ-GAKHYGEAGKRTGSESVVQQAVLFIEQNYYIHIDVDILCKH 202 +LL + L + LIE+ H E+ T ++ V Q I Y + V+ + K Sbjct: 141 ELLMVGELYKLLAALIEEFPLSHLEESNSST--KAYVNQVKKIIHSQYGSSLRVNDIAKK 198 Query: 203 VNYSRSYLSRYFKQITGMSIPEYISKIRIQNAKVLLQKTGLNIQEISASVGITDSLYFSK 262 +N SRSYL + F++ T +SI EYI ++R++ ++ LL+ L+I EIS SVG +DSL FSK Sbjct: 199 LNLSRSYLYKIFRKSTNLSIKEYILQVRMKRSQYLLENPKLSIAEISNSVGFSDSLAFSK 258 Query: 263 LFKNVTGTSPMSYKKHNQ 280 FKN G SP ++K Q Sbjct: 259 AFKNYFGKSPSKFRKEIQ 276 >B3KFN2.1 B3KFN2_9BACI AraC protein arabinose-binding/dimerisation Length = 287 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 88/266 (33%), Positives = 142/266 (53%), Gaps = 18/266 (6%) Query: 22 YITWAGHRKCGKDHVVGPRVLETYKMVFVLSGKG-YLTQGDHVNKMLKQGDIFILLPGEK 80 ++ +AG + +H +GP++ + Y + + SG G + T+ D L GD F++ PG+ Sbjct: 21 HVRFAGESQTLPEHALGPKIFDHYLLHIIESGHGVFRTETDRYQ--LGPGDCFLIHPGQI 78 Query: 81 HFYYADPEDPWEIMWVSFNGQHIPYYLSLMGLDINHCCLEGIATHTIINKMLLL---IQE 137 Y +D PW WV+F+G+H +S +GL L + + I + L+ Q Sbjct: 79 VSYVSDASQPWRYRWVAFDGEHADEEISRLGLTPEKPVLHLVENNPIPGYVSLIQGHFQS 138 Query: 138 LPEAGDGQLLCISYLLHIFHLIEQGAKHYGEAGKR-TGSESVVQ----QAVLFIEQNYYI 192 E+ + I YL HLI + + R T SE VQ Q + ++ Y Sbjct: 139 REESS--HMAAIGYL----HLIWAEIMNQSDRPSRLTLSEPQVQRTVKQMISYMASQYAH 192 Query: 193 HIDVDILCKHVNYSRSYLSRYFKQITGMSIPEYISKIRIQNAKVLL-QKTGLNIQEISAS 251 + ++ +C + Y+R+YLSR FKQ TGM+ Y+ K+RI +K LL ++ L+I+++SAS Sbjct: 193 PVSIEQMCTSLGYNRAYLSRIFKQETGMTPITYLLKLRIDQSKRLLRERPDLSIEQVSAS 252 Query: 252 VGITDSLYFSKLFKNVTGTSPMSYKK 277 VG+TD LYFS+ FK + G SP Y+K Sbjct: 253 VGLTDPLYFSRQFKRLVGRSPSRYRK 278 >B1DE54.1 B1DE54_9BACL Transcriptional regulator, AraC family Length = 294 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 80/263 (30%), Positives = 134/263 (50%), Gaps = 10/263 (3%) Query: 23 ITWAGHRKCGKDHVVGPRVLETYKMVFVLSGKGYLTQGDHVNKMLKQGDIFILLPGEKHF 82 IT+AG + H VGP V Y ++ + + L +GDIF++ PG Sbjct: 25 ITFAGAARPRPLHKVGPAVY-NYTLIHSIDHGFGTFEWQRKKYHLGKGDIFVIFPGVLFN 83 Query: 83 YYADPEDPWEIMWVSFNGQHIPYYLSLMGLDINHCCLEGIATHTIINKMLLLIQELPEAG 142 Y AD +PW WV+ G+++ L +G+ I + + G + + + + QEL E Sbjct: 84 YEADKAEPWSYRWVALQGRNVTEMLENVGVTITNPIVRGADSANLASIFETIEQEL-ELK 142 Query: 143 DGQLLC-------ISYLLHIFHLIEQGAKHYGEAGKRTGSESVVQQAVLFIEQNYYIHID 195 G+ + LL F + HY T SE +V+QA+ + + Y + I Sbjct: 143 SGETITSLATDGWFRLLLAEFARLNTNKLHYSSTKVLTDSERLVEQAIRWFQTQYMLPIS 202 Query: 196 VDILCKHVNYSRSYLSRYFKQITGMSIPEYISKIRIQNAKVLLQKTGLNIQEISASVGIT 255 ++ L + Y R++ ++ FKQ+T +S +YI+++R++ A+ LL T ++I+++ S G T Sbjct: 203 IEKLATSLGYHRTHFTKVFKQLTSLSPKQYINQVRMERARELLN-TNISIEQVGNSCGFT 261 Query: 256 DSLYFSKLFKNVTGTSPMSYKKH 278 D LYFSK FK TGTSP Y++ Sbjct: 262 DPLYFSKQFKKWTGTSPTQYREE 284 >C2H7C6.1 C2H7C6_ENTFC AraC family transcriptional regulator Length = 284 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 83/274 (30%), Positives = 131/274 (47%), Gaps = 8/274 (2%) Query: 8 HFYTPTKTQMEQSAYITWAGHRKCGKDHVVGPRVLETYKMVFVLSGKGYLTQGDHVNKML 67 + T TQ+ + Y + G+ K H GP + E Y + +L G+GY + D L Sbjct: 6 YLVTEPNTQL-KDCYFNFCGYSKTEPRHSFGPAIREQYLIHILLEGEGYYSINDQ-KYFL 63 Query: 68 KQGDIFILLPGEKHFYYADPEDPWEIMWVSFNGQHIPYYLSLMGLDINHCCLEGIATHTI 127 K+G F++ PG FY AD ++PW +W+ +G + YYL +G+ NH + + Sbjct: 64 KKGQGFVIPPGVSTFYQADEKNPWSYVWLGLSGNLVEYYLKEIGVGKNHLTFK---VENL 120 Query: 128 INKMLLLIQELPEAGDGQLLCISYLLHIFHLIE---QGAKHYGEAGKRTGSESVVQQAVL 184 + L+ + L D + +S ++ +E A + E V+Q + Sbjct: 121 NSFKGLIFETLSYDQDNLVSELSRQKQVYKFLELLLNSASYLNEGIITKKMNPFVRQTIE 180 Query: 185 FIEQNYYIHIDVDILCKHVNYSRSYLSRYFKQITGMSIPEYISKIRIQNAKVLLQKTGLN 244 I +N Y + V + ++ +YLSR FK G+SI EYIS+I+I A LL T + Sbjct: 181 IIRENAYQKLSVKDIAVSLSIHENYLSRLFKNDMGISIKEYISEIKISIANDLLSSTEYS 240 Query: 245 IQEISASVGITDSLYFSKLFKNVTGTSPMSYKKH 278 IQ+IS +G + FSK FK G SP Y+K Sbjct: 241 IQQISDKIGFSTVQSFSKAFKKANGVSPGVYRKR 274 >B1SDU2.1 B1SDU2_9STRE Putative uncharacterized protein Length = 288 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 84/254 (33%), Positives = 128/254 (50%), Gaps = 6/254 (2%) Query: 27 GHRKCGKDHVVGPRVLETYKMVFVLSGKGYLTQGDHVNKMLKQGDIFILLPGEKHFYYAD 86 G C K++ GP V + Y + F++ GKG T D + LK GD+FIL G+ FY AD Sbjct: 34 GAEICAKNYSFGPTVRDNYVLHFIVDGKGKFTI-DGITTQLKTGDMFILPKGKVAFYQAD 92 Query: 87 PEDPWEIMWVSFNGQHIPYYLS---LMGLDINHCCLEGIATHTIINKMLLLIQELPEAGD 143 E PW +WV F+G LS L+ H LE I+ Q+L + + Sbjct: 93 GEHPWTYLWVGFSGSKAENILSKTQLLDHYFCHSTLESKVLDQIVKLTQFRDQKLDDVTE 152 Query: 144 GQLLCISYLLHIFHLIEQGAKHYGEAGKRTGSESVVQQAVLFIEQNYYIHIDVDILCKHV 203 QL Y L F + E +K ++ ++ ++Q I Y + + + K + Sbjct: 153 LQLTAELYKLLAFLMKEFPSKAMSDSSILI--QNYIKQVKKIIHTQYGNPLKISEIAKKL 210 Query: 204 NYSRSYLSRYFKQITGMSIPEYISKIRIQNAKVLLQKTGLNIQEISASVGITDSLYFSKL 263 N +RSYL + FK+ T S+ +Y+ +IR++ + LL +T +I EI+ +VG D+L FSK Sbjct: 211 NLNRSYLYKIFKEETDYSLKDYLIQIRMEKSADLLTRTTFHISEIANAVGFPDALAFSKA 270 Query: 264 FKNVTGTSPMSYKK 277 FK G SP Y+K Sbjct: 271 FKKHFGQSPSHYRK 284 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.138 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,731,106,745 Number of extensions: 71651152 Number of successful extensions: 157357 Number of sequences better than 1.0e-05: 4105 Number of HSP's gapped: 156701 Number of HSP's successfully gapped: 4110 Length of query: 282 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 148 Effective length of database: 1,798,280,193 Effective search space: 266145468564 Effective search space used: 266145468564 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)