BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0514.0013.p (323 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K9F8.1 B3K9F8_9BACI Binding-protein-dependent transport system... 272 3e-71 B3K468.1 B3K468_9BACI Binding-protein-dependent transport system... 271 6e-71 B9MLB8.1 B9MLB8_ANATD Binding-protein-dependent transport system... 271 9e-71 B3KC81.1 B3KC81_9BACI Binding-protein-dependent transport system... 262 3e-68 B3KJV4.1 B3KJV4_9BACI Binding-protein-dependent transport system... 258 4e-67 >B3K9F8.1 B3K9F8_9BACI Binding-protein-dependent transport systems inner membrane component Length = 306 Score = 272 bits (695), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 131/279 (46%), Positives = 195/279 (69%), Gaps = 5/279 (1%) Query: 47 FKLAPLGGMIIAFQDFSAFRGVLGSPFVGLEHFQRIFE-DPYIWTLVKNTIILAFYSLLF 105 FK AP+ G+IIAFQD+S RG+LGS FVGL+HF F P W L++NTI+L Y LLF Sbjct: 31 FKYAPMYGIIIAFQDYSIGRGILGSKFVGLKHFIEFFYVTPDAWKLIRNTIMLNVYDLLF 90 Query: 106 TFPIPILFALLLNEVRVRWIKGSVQSLSFLPYFISSAVMVSILYTLLSPSTGLVNDILAR 165 FP PI+ A+L +E++ +W K VQ++S++P+F+S+ V+ IL T LSP+TG+VN +L + Sbjct: 91 HFPAPIILAILFHELKSKWFKRFVQNISYMPHFLSTVVIAGILVTFLSPTTGVVNHLLVK 150 Query: 166 -FGLDTIYFVAEPGWFRSNYVLLQVWQTFGYSAIVYIAAMAAIDPSVYESASLDGASRFQ 224 FG++ I F+ P WFR+ YV ++WQ G+ I+Y+AA+A IDP++YE+A +DGA+R+Q Sbjct: 151 LFGIEPIMFLGMPEWFRTVYVGSEIWQKVGWGTILYLAAIAGIDPTLYEAAKMDGANRWQ 210 Query: 225 QMLHITLPSLKPTIAIMLIISVGNIFTVDLDRILLMYNQSVYETADVIQTYVYRLAFAST 284 Q+ HIT + P + I+ ++S+GN ++ILL+YN YET+DVI T+VYR Sbjct: 211 QVRHITFIGMVPVMIILFVLSLGNFMEASFEKILLIYNTMNYETSDVINTFVYRRGILDA 270 Query: 285 GFPEYSYGTAVNLLKSVVAYILVVGTNKLSTKYSDTRLF 323 ++S+ TAV L +S + +ILVV N++ KYS+T L+ Sbjct: 271 ---DFSFATAVGLFQSAIGFILVVAANRIVRKYSETSLW 306 >B3K468.1 B3K468_9BACI Binding-protein-dependent transport systems inner membrane component Length = 321 Score = 271 bits (693), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 127/277 (45%), Positives = 188/277 (67%), Gaps = 3/277 (1%) Query: 47 FKLAPLGGMIIAFQDFSAFRGVLGSPFVGLEHFQRIFEDPYIWTLVKNTIILAFYSLLFT 106 F+ PL G+IIAF+D+S F G++ S +VGL+HF++ F P W L KNT++L Y+L+F Sbjct: 48 FRYGPLYGLIIAFKDYSVFTGIMESEWVGLKHFEKFFGSPDFWLLFKNTLLLGVYNLIFG 107 Query: 107 FPIPILFALLLNEVRVRWIKGSVQSLSFLPYFISSAVMVSILYTLLSPSTGLVNDILARF 166 FP PI+ A+LLNEVRV+W K SVQ+LS+LP F+S ++ S++ LSP+ G++N ++A Sbjct: 108 FPFPIILAILLNEVRVKWFKKSVQTLSYLPSFLSVVIISSMIIDFLSPNQGIINQLIAAL 167 Query: 167 GLDTIYFVAEPGWFRSNYVLLQVWQTFGYSAIVYIAAMAAIDPSVYESASLDGASRFQQM 226 G + YF+ EP WFR+ YV +W T GY AI+Y+AA+A I PS+YE+A +DGA R + Sbjct: 168 GFEKTYFLIEPSWFRTIYVSSDIWATVGYEAIIYMAAIAGISPSLYEAAKVDGAKRRHMI 227 Query: 227 LHITLPSLKPTIAIMLIISVGNIFTVDLDRILLMYNQSVYETADVIQTYVYRLAFASTGF 286 IT+P++ PTI IM ++ G++ + +++LL+YN YE ADV TYVYR + Sbjct: 228 FKITIPAILPTIIIMFVLKTGSMLRIGYEKVLLLYNPMTYEVADVFSTYVYRKGLLES-- 285 Query: 287 PEYSYGTAVNLLKSVVAYILVVGTNKLSTKYSDTRLF 323 YSYG AV L ++VVA IL++ +N S + + L+ Sbjct: 286 -NYSYGAAVGLFEAVVAMILLLSSNYFSKRLGGSGLW 321 >B9MLB8.1 B9MLB8_ANATD Binding-protein-dependent transport systems inner membrane component Length = 315 Score = 271 bits (692), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 128/307 (41%), Positives = 204/307 (66%), Gaps = 3/307 (0%) Query: 17 KTRIRRFLAYMNTNKXXXXXXXXXXXXXXXFKLAPLGGMIIAFQDFSAFRGVLGSPFVGL 76 +TR + F M K F P+ G+IIAF+D++ +G+LGS ++GL Sbjct: 12 QTRFKTFWKSMKKTKYLHLLALPGVLYYIIFHYIPMYGVIIAFKDYNFRKGILGSEWIGL 71 Query: 77 EHFQRIFEDPYIWTLVKNTIILAFYSLLFTFPIPILFALLLNEVRVRWIKGSVQSLSFLP 136 +HF R FE+P+ W L++NT+++ Y ++F FP+PILFAL LNE+R + K VQ++S+LP Sbjct: 72 KHFIRFFENPFFWRLIRNTVLINVYQIIFVFPLPILFALFLNELRDGFYKRFVQTVSYLP 131 Query: 137 YFISSAVMVSILYTLLSPSTGLVNDILARFGLDTIYFVAEPGWFRSNYVLLQVWQTFGYS 196 +FIS ++ ++ LSP+ G+VN IL + GL TIYF+A+P WFR Y++ +WQ G+ Sbjct: 132 HFISLPAIIGMMVMFLSPTDGVVNMILQKMGLPTIYFMADPRWFRPLYIISDIWQHLGWG 191 Query: 197 AIVYIAAMAAIDPSVYESASLDGASRFQQMLHITLPSLKPTIAIMLIISVGNIFTVDLDR 256 AI+YIAA++ ++P +YE A +DGA+R Q M +I++PS+ PTI IML++ +G+I ++ ++ Sbjct: 192 AIIYIAALSNVNPELYEGAVIDGATRVQMMRYISIPSIMPTIVIMLLLRIGHIMSLGAEK 251 Query: 257 ILLMYNQSVYETADVIQTYVYRLAFASTGFPEYSYGTAVNLLKSVVAYILVVGTNKLSTK 316 +LLM + YET+DVI TYVYR + EYSY TA+ S++ +++ NK++ + Sbjct: 252 VLLMQSPLNYETSDVISTYVYRRGLV---YGEYSYTTAIGFFNSLINLTILIIANKITKR 308 Query: 317 YSDTRLF 323 ++T LF Sbjct: 309 VTETGLF 315 >B3KC81.1 B3KC81_9BACI Binding-protein-dependent transport systems inner membrane component Length = 319 Score = 262 bits (670), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 124/277 (44%), Positives = 188/277 (67%), Gaps = 3/277 (1%) Query: 47 FKLAPLGGMIIAFQDFSAFRGVLGSPFVGLEHFQRIFEDPYIWTLVKNTIILAFYSLLFT 106 F+ P+ G+ IAF+DF A +G+ GSP+VG EHF R F Y W L+KNT+ + YSL Sbjct: 46 FQYVPMYGIQIAFKDFIATQGIWGSPWVGFEHFDRFFNSYYFWRLIKNTLGIGLYSLAVG 105 Query: 107 FPIPILFALLLNEVRVRWIKGSVQSLSFLPYFISSAVMVSILYTLLSPSTGLVNDILARF 166 FPIPI+ ALL+NEVR K VQ++++ P+F+S+ V+V ++ LSP G++N + F Sbjct: 106 FPIPIILALLMNEVRAERFKKFVQTITYAPHFLSTVVVVGMMMIFLSPRYGIINHFIEMF 165 Query: 167 GLDTIYFVAEPGWFRSNYVLLQVWQTFGYSAIVYIAAMAAIDPSVYESASLDGASRFQQM 226 G I F+ EP WF+S YVL VWQT G+S+I+Y+AA+A ID ++E+A +DGA+R Q++ Sbjct: 166 GGQPINFMTEPSWFKSLYVLSDVWQTMGWSSIIYLAALAGIDNQLHEAARVDGATRLQRI 225 Query: 227 LHITLPSLKPTIAIMLIISVGNIFTVDLDRILLMYNQSVYETADVIQTYVYRLAFASTGF 286 HI +P + PTI I+LI+++G+I + +++LLM N E++D+I TYVYR+ + Sbjct: 226 WHINIPGIMPTIIILLILNMGSIMGIGFEKVLLMQNNLNMESSDIIATYVYRMGIQNA-- 283 Query: 287 PEYSYGTAVNLLKSVVAYILVVGTNKLSTKYSDTRLF 323 EYS+ A+ L SV+ +IL+V N +S + S+T L+ Sbjct: 284 -EYSFSAAIGLFNSVINFILLVAVNFISKRVSETSLW 319 >B3KJV4.1 B3KJV4_9BACI Binding-protein-dependent transport systems inner membrane component Length = 315 Score = 258 bits (660), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 125/277 (45%), Positives = 194/277 (70%), Gaps = 4/277 (1%) Query: 47 FKLAPLGGMIIAFQDFSAFRGVLGSPFVGLEHFQRIFEDPYIWTLVKNTIILAFYSLLFT 106 F P+ G+++AF+DFS G+ GS ++G EHF+ F Y L++NT+++ Y L+F Sbjct: 43 FHYGPMYGLLMAFKDFSIADGIWGSEWIGFEHFRNFFNSYYFERLLRNTVLINVYELIFA 102 Query: 107 FPIPILFALLLNEVRVRWIKGSVQSLSFLPYFISSAVMVSILYTLLSPSTGLVNDILARF 166 FP PI+ ALLLNE+R R K +VQ++S+LP+F+S V+ I++ L+ GLVN IL F Sbjct: 103 FPAPIILALLLNEIRSRLFKRTVQTISYLPHFVSIVVVTGIMFDFLA-RDGLVNQILGFF 161 Query: 167 GLDTIYFVAEPGWFRSNYVLLQVWQTFGYSAIVYIAAMAAIDPSVYESASLDGASRFQQM 226 G+++I F++E WFR+ YV +WQ G+ +I+Y+AA+A IDP++YE+A +DGA R++QM Sbjct: 162 GIESIPFMSEASWFRTLYVGSGIWQGVGWGSIIYLAAIATIDPTLYEAAKMDGAGRWKQM 221 Query: 227 LHITLPSLKPTIAIMLIISVGNIFTVDLDRILLMYNQSVYETADVIQTYVYRLAFASTGF 286 LHITLP + PTI I+ I+++G++ +V +++LLMY+ YETADVI T+VYR T Sbjct: 222 LHITLPGMLPTIIIIFILNMGSMLSVGSEKVLLMYSPLTYETADVISTFVYRRGVLET-- 279 Query: 287 PEYSYGTAVNLLKSVVAYILVVGTNKLSTKYSDTRLF 323 +Y + TAV L +VV++IL+V N +S + S+ +L+ Sbjct: 280 -DYGFTTAVGLFNAVVSFILLVLANSISKRVSEHKLW 315 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.141 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,678,916,542 Number of extensions: 62731018 Number of successful extensions: 235974 Number of sequences better than 1.0e-05: 5593 Number of HSP's gapped: 230980 Number of HSP's successfully gapped: 5593 Length of query: 323 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 187 Effective length of database: 1,779,438,163 Effective search space: 332754936481 Effective search space used: 332754936481 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)