BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0514.0011.p (296 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A6TJU6.1 A6TJU6_ALKMQ Dihydrodipicolinate synthase EC=4.2.1.52 301 4e-80 B2U6L4.1 B2U6L4_RALPJ Dihydrodipicolinate synthase 290 8e-77 Q65EJ2.1 Q65EJ2_BACLD Putative uncharacterized protein 288 5e-76 Q1BVB3.1 Q1BVB3_BURCA Dihydrodipicolinate synthase EC=4.2.1.52 288 5e-76 A0KCW1.1 A0KCW1_BURCH Dihydrodipicolinate synthase EC=4.2.1.52 288 5e-76 >A6TJU6.1 A6TJU6_ALKMQ Dihydrodipicolinate synthase EC=4.2.1.52 Length = 295 Score = 301 bits (772), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 139/290 (47%), Positives = 200/290 (68%) Query: 1 MLEVKGIIPAMVTPLDQREEIDEKALRQMVNRYIDAGVHGLFCLGTNGEFFNLSFEEKLT 60 M+ + GI+PAMVTP+++ E I+EK LR VNR I+AGVHGLFCLGTNGEF+ L+ EEKL Sbjct: 1 MVNIHGIVPAMVTPMNEDETINEKELRAQVNRQIEAGVHGLFCLGTNGEFYILNQEEKLK 60 Query: 61 VAQIVIHEARGRVPVYAGAGCAGTGETRRLAQRLEQAGADALSVITPYFLTYTQPELQYH 120 V +IVIHE GR+PV+ G G GT ET +L+Q+ ++ GAD LSVITPYF +Q E+ H Sbjct: 61 VMEIVIHENAGRLPVFVGTGAIGTKETVQLSQKAQELGADVLSVITPYFAAASQNEIYEH 120 Query: 121 FEAVAGETSLPLVLYTIPARTGNTLSVQTVAKLAELPNVVGIKDSSGSFDNILQLIDHTP 180 F+ VA +P++ Y IP RTG ++V T+ +L+++PN+ G+KDSSG+FDNILQ I+ T Sbjct: 121 FKTVANSVDIPILPYNIPMRTGANINVDTLKRLSQIPNITGVKDSSGNFDNILQYIESTD 180 Query: 181 ESFSVLAGTDSLILSTLMXXXXXXXXXXXNIFPSTVVAIYEHWQCGEYEQAEQAQRVLRD 240 +SF+VL+G DSL+L TL N+FP T+ +IYE W+ GE+ +A++ Q +R+ Sbjct: 181 DSFAVLSGNDSLVLWTLQAGGKGAICGIANLFPHTMASIYELWKAGEFAEAKKVQDSIRE 240 Query: 241 LRAAFALGTLPSVLKAVLDEIGLPAGPARRPVAPLTPQALEEVRRMVAGY 290 +R F LG +++K + +G P GP R+P + EE++R++ Y Sbjct: 241 IRNCFKLGNPNTIVKIATNLLGHPVGPCRKPFYTNSESIREEIQRVLHTY 290 >B2U6L4.1 B2U6L4_RALPJ Dihydrodipicolinate synthase Length = 298 Score = 290 bits (743), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 144/286 (50%), Positives = 190/286 (66%) Query: 5 KGIIPAMVTPLDQREEIDEKALRQMVNRYIDAGVHGLFCLGTNGEFFNLSFEEKLTVAQI 64 KGI+PA++TP+ E++DE LR +++R IDAGVHGLF LGTNGEF LS EEKL +A+I Sbjct: 6 KGIVPALITPMTPTEDVDENGLRVLIDRLIDAGVHGLFVLGTNGEFIALSEEEKLRIARI 65 Query: 65 VIHEARGRVPVYAGAGCAGTGETRRLAQRLEQAGADALSVITPYFLTYTQPELQYHFEAV 124 + +ARGRVPV AG G T + L +++ G DA+SVITPYF TQPEL H+E + Sbjct: 66 TVEQARGRVPVVAGTGAYATRDVIALNHKMQDVGVDAVSVITPYFNGATQPELFAHYEQI 125 Query: 125 AGETSLPLVLYTIPARTGNTLSVQTVAKLAELPNVVGIKDSSGSFDNILQLIDHTPESFS 184 A TSLP++LYTIPA+ G TL+V TV +LA++PN+ IKDS G FD +LQLI+ + F+ Sbjct: 126 ARATSLPILLYTIPAKAGVTLTVDTVRRLADIPNIRAIKDSGGDFDRLLQLINLRRDDFA 185 Query: 185 VLAGTDSLILSTLMXXXXXXXXXXXNIFPSTVVAIYEHWQCGEYEQAEQAQRVLRDLRAA 244 V GTDS+IL TL+ N P V++I+ +Q G A AQ LR LR A Sbjct: 186 VFTGTDSMILWTLIAGGDGAVAATTNAVPHVVMSIWNQFQAGNIPAARAAQESLRALRDA 245 Query: 245 FALGTLPSVLKAVLDEIGLPAGPARRPVAPLTPQALEEVRRMVAGY 290 FALGT+P VLK + +G+PAGPAR P PL ++ E + +A Y Sbjct: 246 FALGTMPVVLKTAAEMLGMPAGPARSPAKPLDEKSRERLAEALAIY 291 >Q65EJ2.1 Q65EJ2_BACLD Putative uncharacterized protein Length = 295 Score = 288 bits (736), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 147/290 (50%), Positives = 191/290 (65%), Gaps = 1/290 (0%) Query: 5 KGIIPAMVTPLDQREEIDEKALRQMVNRYIDAGVHGLFCLGTNGEFFNLSFEEKLTVAQI 64 KGI PAM+TPL + + IDE AL+Q+ N IDA VHGLF LGTNGEF + E+KL VA+I Sbjct: 6 KGIYPAMLTPLTKDQSIDESALKQLTNHLIDAHVHGLFALGTNGEFHMFNIEDKLKVAEI 65 Query: 65 VIHEARGRVPVYAGAGCAGTGETRRLAQRLEQAGADALSVITPYFLTYTQPELQYHFEAV 124 +I E RVPV G+G T E L++ +E+ GADALSVITP+F+ TQ E H++ + Sbjct: 66 IIQETAERVPVMVGSGGNSTEEAIWLSKEIERLGADALSVITPFFIPPTQEEAAVHYKTI 125 Query: 125 AGETSLPLVLYTIPARTGNTLSVQTVAKLAELPNVVGIKDSSGSFDNILQLIDHTP-ESF 183 A SLP++LY IP++TG L +TVA+LA++ N+VGIKDSSG+F+NI Q I+ T + F Sbjct: 126 AASVSLPILLYNIPSKTGFHLEPETVAELAKVDNIVGIKDSSGNFENIQQYIEQTKNDDF 185 Query: 184 SVLAGTDSLILSTLMXXXXXXXXXXXNIFPSTVVAIYEHWQCGEYEQAEQAQRVLRDLRA 243 SV AGTDSLIL TL N+ P V +IY HW GE E+AE AQ L+ LR Sbjct: 186 SVFAGTDSLILKTLQAGGAGAVAATANMLPDIVTSIYHHWAEGETEKAEAAQMELQPLRD 245 Query: 244 AFALGTLPSVLKAVLDEIGLPAGPARRPVAPLTPQALEEVRRMVAGYAER 293 F LGT+P+ LK ++ +P GP + PV LT AL EV +MVA Y + Sbjct: 246 TFRLGTIPAALKKAVELYSIPVGPPKAPVKELTGPALLEVEKMVASYQSK 295 >Q1BVB3.1 Q1BVB3_BURCA Dihydrodipicolinate synthase EC=4.2.1.52 Length = 298 Score = 288 bits (736), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 144/288 (50%), Positives = 189/288 (65%) Query: 5 KGIIPAMVTPLDQREEIDEKALRQMVNRYIDAGVHGLFCLGTNGEFFNLSFEEKLTVAQI 64 KGI+PA++TP+ E +DE LR +V R I+AGVHGLF LGTNGEF L+ EEKL +A+I Sbjct: 6 KGIVPALITPMTANENVDEDGLRALVERLIEAGVHGLFVLGTNGEFIALNEEEKLRIARI 65 Query: 65 VIHEARGRVPVYAGAGCAGTGETRRLAQRLEQAGADALSVITPYFLTYTQPELQYHFEAV 124 + +AR RVPV AG G T + L +++ AG DA+SVITPYF TQPEL H++ + Sbjct: 66 AVSQARSRVPVIAGTGAYATRDVIDLNRKMADAGVDAVSVITPYFNGATQPELYAHYKQI 125 Query: 125 AGETSLPLVLYTIPARTGNTLSVQTVAKLAELPNVVGIKDSSGSFDNILQLIDHTPESFS 184 A T LP++LYTIPA+ G TL+V TV +LAE+PN+ GIKDS G FD +LQLID + F+ Sbjct: 126 ADATPLPVMLYTIPAKAGITLTVDTVRRLAEIPNIRGIKDSGGDFDRLLQLIDLRRDDFA 185 Query: 185 VLAGTDSLILSTLMXXXXXXXXXXXNIFPSTVVAIYEHWQCGEYEQAEQAQRVLRDLRAA 244 V GTDS+IL TL+ N P V++I+ + G+ A AQ LR LR A Sbjct: 186 VFTGTDSMILWTLIAGGDGAVAATTNAVPHVVMSIWNKFHAGDIAGARTAQESLRALRDA 245 Query: 245 FALGTLPSVLKAVLDEIGLPAGPARRPVAPLTPQALEEVRRMVAGYAE 292 FALGT+P VLK +G+PAGPAR P PL QA E + + ++ Y + Sbjct: 246 FALGTMPVVLKTAAQMLGMPAGPARSPAQPLDAQARERLAQALSVYRD 293 >A0KCW1.1 A0KCW1_BURCH Dihydrodipicolinate synthase EC=4.2.1.52 Length = 298 Score = 288 bits (736), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 144/288 (50%), Positives = 189/288 (65%) Query: 5 KGIIPAMVTPLDQREEIDEKALRQMVNRYIDAGVHGLFCLGTNGEFFNLSFEEKLTVAQI 64 KGI+PA++TP+ E +DE LR +V R I+AGVHGLF LGTNGEF L+ EEKL +A+I Sbjct: 6 KGIVPALITPMTANENVDEDGLRALVERLIEAGVHGLFVLGTNGEFIALNEEEKLRIARI 65 Query: 65 VIHEARGRVPVYAGAGCAGTGETRRLAQRLEQAGADALSVITPYFLTYTQPELQYHFEAV 124 + +AR RVPV AG G T + L +++ AG DA+SVITPYF TQPEL H++ + Sbjct: 66 AVSQARSRVPVIAGTGAYATRDVIDLNRKMADAGVDAVSVITPYFNGATQPELYAHYKQI 125 Query: 125 AGETSLPLVLYTIPARTGNTLSVQTVAKLAELPNVVGIKDSSGSFDNILQLIDHTPESFS 184 A T LP++LYTIPA+ G TL+V TV +LAE+PN+ GIKDS G FD +LQLID + F+ Sbjct: 126 ADATPLPVMLYTIPAKAGITLTVDTVRRLAEIPNIRGIKDSGGDFDRLLQLIDLRRDDFA 185 Query: 185 VLAGTDSLILSTLMXXXXXXXXXXXNIFPSTVVAIYEHWQCGEYEQAEQAQRVLRDLRAA 244 V GTDS+IL TL+ N P V++I+ + G+ A AQ LR LR A Sbjct: 186 VFTGTDSMILWTLIAGGDGAVAATTNAVPHVVMSIWNKFHAGDIAGARTAQESLRALRDA 245 Query: 245 FALGTLPSVLKAVLDEIGLPAGPARRPVAPLTPQALEEVRRMVAGYAE 292 FALGT+P VLK +G+PAGPAR P PL QA E + + ++ Y + Sbjct: 246 FALGTMPVVLKTAAQMLGMPAGPARSPAQPLDAQARERLAQALSVYRD 293 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,660,741,382 Number of extensions: 66509398 Number of successful extensions: 193948 Number of sequences better than 1.0e-05: 3467 Number of HSP's gapped: 190827 Number of HSP's successfully gapped: 3467 Length of query: 296 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 161 Effective length of database: 1,788,859,178 Effective search space: 288006327658 Effective search space used: 288006327658 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)