BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0513.0007.p
         (98 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C4WIV2.1 C4WIV2_9RHIZ Aspartate racemase                              112   1e-23
C0ZJA5.1 C0ZJA5_BREBN Putative uncharacterized protein                111   3e-23
B6X8D8.1 B6X8D8_9ENTR Putative uncharacterized protein                110   4e-23
A6WWC7.1 A6WWC7_OCHA4 Aspartate racemase                              108   1e-22
B2Q0H1.1 B2Q0H1_PROST Putative uncharacterized protein                107   3e-22

>C4WIV2.1 C4WIV2_9RHIZ Aspartate racemase
          Length = 274

 Score =  112 bits (280), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 47/80 (58%), Positives = 66/80 (82%)

Query: 5   IVPDDADRVVIHDIIYYELCLGIINEHSKKKYLEIMDRLIHKGAEAVILGCTEITMLISQ 64
           + PDDADR  +HDIIY EL +G + + S++KY  +++RL+ +GAEA+ILGCTEI +LI Q
Sbjct: 189 LTPDDADRKTVHDIIYQELVVGEVRDASREKYRAVINRLVRRGAEAIILGCTEIMLLIGQ 248

Query: 65  EDCNIPIYDTTRLHAEAAVD 84
           +D ++P++DTTRLHAEAAVD
Sbjct: 249 QDSSVPVFDTTRLHAEAAVD 268


>C0ZJA5.1 C0ZJA5_BREBN Putative uncharacterized protein
          Length = 230

 Score =  111 bits (277), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 46/82 (56%), Positives = 68/82 (82%)

Query: 5   IVPDDADRVVIHDIIYYELCLGIINEHSKKKYLEIMDRLIHKGAEAVILGCTEITMLISQ 64
           ++PD+ +R ++H+IIY ELC+GII E SK+ Y  I++RL+ +GAEAVILGCTEI +LI+ 
Sbjct: 147 LLPDEQERTLVHEIIYNELCVGIIREESKRNYQAIIERLVKEGAEAVILGCTEIGLLITA 206

Query: 65  EDCNIPIYDTTRLHAEAAVDGS 86
           +DC +P++DTT +HAEAAV+ +
Sbjct: 207 QDCTVPVFDTTAIHAEAAVEAA 228


>B6X8D8.1 B6X8D8_9ENTR Putative uncharacterized protein
          Length = 251

 Score =  110 bits (275), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 47/80 (58%), Positives = 65/80 (81%)

Query: 5   IVPDDADRVVIHDIIYYELCLGIINEHSKKKYLEIMDRLIHKGAEAVILGCTEITMLISQ 64
           I+P+DADR V+HDIIY ELC+G I E SK +Y  IM +L+ +GAE +ILGCTEIT+L+ Q
Sbjct: 167 IIPNDADRKVVHDIIYNELCVGKIKESSKAEYQRIMRQLVKQGAEGIILGCTEITLLVGQ 226

Query: 65  EDCNIPIYDTTRLHAEAAVD 84
           ED ++P++DTT +HA+ AV+
Sbjct: 227 EDTSVPVFDTTAIHAQKAVE 246


>A6WWC7.1 A6WWC7_OCHA4 Aspartate racemase
          Length = 230

 Score =  108 bits (271), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 47/80 (58%), Positives = 64/80 (80%)

Query: 5   IVPDDADRVVIHDIIYYELCLGIINEHSKKKYLEIMDRLIHKGAEAVILGCTEITMLISQ 64
           + PDDADR  +HDIIY EL +G I + S++KY  +++RL+ +GA A+ILGCTEI +LI Q
Sbjct: 147 LTPDDADRKTVHDIIYQELVVGEIRDASREKYRAVINRLVERGARAIILGCTEIMLLIGQ 206

Query: 65  EDCNIPIYDTTRLHAEAAVD 84
           +D  +P++DTTRLHAEAAVD
Sbjct: 207 QDSPVPVFDTTRLHAEAAVD 226


>B2Q0H1.1 B2Q0H1_PROST Putative uncharacterized protein
          Length = 231

 Score =  107 bits (267), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 47/80 (58%), Positives = 60/80 (75%)

Query: 5   IVPDDADRVVIHDIIYYELCLGIINEHSKKKYLEIMDRLIHKGAEAVILGCTEITMLISQ 64
           + P+D DR ++HDIIY ELCLG I   SKK+Y  IM  L+  GAE +ILGCTEIT+L+ Q
Sbjct: 147 LTPNDQDRKIVHDIIYQELCLGKITTGSKKQYQRIMASLVENGAEGIILGCTEITLLVDQ 206

Query: 65  EDCNIPIYDTTRLHAEAAVD 84
            D ++PI+DTT LHA+ AVD
Sbjct: 207 NDTSVPIFDTTALHAQKAVD 226


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.325    0.143    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 558,396,543
Number of extensions: 18670055
Number of successful extensions: 65069
Number of sequences better than 1.0e-05: 481
Number of HSP's gapped: 65072
Number of HSP's successfully gapped: 481
Length of query: 98
Length of database: 3,060,696,203
Length adjustment: 67
Effective length of query: 31
Effective length of database: 2,429,488,198
Effective search space: 75314134138
Effective search space used: 75314134138
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 125 (52.8 bits)