BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0513.0005.p (214 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C1B5S4.1 C1B5S4_RHOOB Putative oxidoreductase 139 1e-31 A0QDT4.1 A0QDT4_MYCA1 Putative uncharacterized protein 135 3e-30 A1SIQ5.1 A1SIQ5_NOCSJ NmrA family protein 120 1e-25 B4WMY5.1 B4WMY5_9SYNE 3-beta hydroxysteroid dehydrogenase/isomer... 117 5e-25 A3IRV6.1 A3IRV6_9CHRO Putative uncharacterized protein 116 2e-24 >C1B5S4.1 C1B5S4_RHOOB Putative oxidoreductase Length = 213 Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 81/220 (36%), Positives = 115/220 (52%), Gaps = 14/220 (6%) Query: 1 MNITIFGASGAIGQLLTRLALDHGDFVTAYVRNAQKISLKHPN-LSLIQGELSNASTIEE 59 M +T+FGA+GAIGQLL L G V AYVRN K+ + + + L+ GE+++A I+ Sbjct: 1 MKVTVFGATGAIGQLLVHNLLASGHTVRAYVRNPSKVPAQWRDQVQLVVGEITDADAIDN 60 Query: 60 AVAKSDVVISTLGPASDMSRKLKGTPIADGHELMIRAMKKLNKKRLITLATPALQSDDDK 119 AVA +D+V+S LGP+ M RK G P+ +G L+I AMK+ R I L TP++ D Sbjct: 61 AVADTDIVVSALGPS--MDRKATGLPLVEGTTLIIDAMKRHRVPRFIGLGTPSVLDRRDT 118 Query: 120 KNISTILPGVMAKVFLPNGYAEMKKMEGIIKQSNLDWTVVRIINPN------VKHKGQSY 173 K + L G+M + LP Y E+ M + S LDWT+VR I P + HKG Sbjct: 119 KTLQARLVGLMGRTLLPRAYRELLGMSEVAMNSGLDWTIVRFIRPTDGPPKEIAHKG--- 175 Query: 174 DYSLGDKSAKLSVSRENVAKIMYAATRDNQLIRKMPIVYN 213 G S +R ++A A + I P + N Sbjct: 176 --FFGTDKIGWSTTRADIAAFTAAQVDSDTYINAAPAISN 213 >A0QDT4.1 A0QDT4_MYCA1 Putative uncharacterized protein Length = 214 Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 77/215 (35%), Positives = 119/215 (55%), Gaps = 5/215 (2%) Query: 1 MNITIFGASGAIGQLLTRLALDHGDFVTAYVRNAQKISLKHPNLSLIQGELSNASTIEEA 60 + +T+FGA+G IG+ + L G TAYVRN K+ + P+L++ GELS+A + +A Sbjct: 3 LRVTVFGATGQIGRFVVADLLADGHAATAYVRNPGKLQVADPHLTVATGELSDAEAVRKA 62 Query: 61 VAKSDVVISTLGPASDMSRKLKGTPIADGHELMIRAMKKLNKKRLITLATPALQSDDDKK 120 V +D VIS LGP+ +SR+ KGTP+ +G ++ AM+ + R I LATP++ D+ Sbjct: 63 VRGADAVISALGPS--LSRRAKGTPVTEGTRNIVAAMQAEHVSRYIGLATPSVPDSRDRP 120 Query: 121 NI-STILPGVMAKVFLPNGYAEMKKMEGIIKQSNLDWTVVRIINP-NVKHKGQSYDYSLG 178 + + ILP ++A PN E+ M + S+L WT+ RI +P N + KG LG Sbjct: 121 TLKAKILP-IIAGTLFPNALGEIVGMTKAVTDSDLAWTIARITSPNNSRPKGTLRVGFLG 179 Query: 179 DKSAKLSVSRENVAKIMYAATRDNQLIRKMPIVYN 213 +SR ++A + A D IR P + N Sbjct: 180 RDKVGSVMSRADIAAFLVAQLDDETFIRAAPAISN 214 >A1SIQ5.1 A1SIQ5_NOCSJ NmrA family protein Length = 213 Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 68/215 (31%), Positives = 107/215 (49%), Gaps = 4/215 (1%) Query: 1 MNITIFGASGAIGQLLTRLALDHGDFVTAYVRNAQKISLKHPN-LSLIQGELSNASTIEE 59 MN+T+FGA+GAIG L LD G VTAY RN K+ + + ++ GEL +A+ I+ Sbjct: 1 MNVTVFGATGAIGSLTVTELLDRGHTVTAYARNPDKVPPGWADRVRVVIGELDDAAAIDT 60 Query: 60 AVAKSDVVISTLGPASDMSRKLKGTPIADGHELMIRAMKKLNKKRLITLATPALQSDDDK 119 A+ + V+S LGP+ M R G P+ G ++ AM + +R + ATPA+ ++ Sbjct: 61 AILGAHAVVSALGPS--MERTATGLPLVVGIGHILDAMGRHGVRRYVGHATPAILDPRER 118 Query: 120 KNISTILPGVMAKVFLPNGYAEMKKMEGIIKQSNLDWTVVRIINP-NVKHKGQSYDYSLG 178 + T M + F+ Y E+ M ++ SNLDWT+VR I P + KG G Sbjct: 119 PTLVTRFTTFMPRTFMRRAYDEITGMTDLVMASNLDWTIVRFIAPKDTPKKGTPRVGFFG 178 Query: 179 DKSAKLSVSRENVAKIMYAATRDNQLIRKMPIVYN 213 ++ R ++A D + + P + N Sbjct: 179 TDKLGFAIGRADIAAFTAGQVDDTTYVHRAPAISN 213 >B4WMY5.1 B4WMY5_9SYNE 3-beta hydroxysteroid dehydrogenase/isomerase family Length = 209 Score = 117 bits (294), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 71/214 (33%), Positives = 119/214 (55%), Gaps = 14/214 (6%) Query: 1 MNITIFGASGAIGQLLTRLALDHGDFVTAYVRNAQKISLKHPNLSLIQGELSNASTIEEA 60 M + IFGA+G+IGQ + AL VTA+VR+ K+ +HPNL L QG++ N S++E+A Sbjct: 1 MKLVIFGATGSIGQQVVDQALAQEHTVTAFVRDPAKLETQHPNLRLFQGDVMNLSSVEQA 60 Query: 61 VAKSDVVISTLGPASDMSRKLKGTPIADGHELMIRAMKKLNKKRLITLATPALQSDDDKK 120 V D V+ LG ++ ++ ++G + +IRAM++ + +RLI +T L + D Sbjct: 61 VEGQDAVVCVLGSGKSLTSTIR----SEGTKQIIRAMEQTDVRRLICQST--LGAGDSWG 114 Query: 121 NISTILPGVMAKVFLPNGYAEMKKMEGIIKQSNLDWTVVRIINPNVKHKG-QSYDYSLG- 178 N+ +M L +A+ ++ E +KQS+LDWT+VR P+ G Q+ Y G Sbjct: 115 NLDFYWKYIMFGFILRKVFADHQRQERYVKQSHLDWTIVR---PSAFIDGPQTGAYRHGF 171 Query: 179 ---DKSAKLSVSRENVAKIMYAATRDNQLIRKMP 209 DK+++L ++R +VA + + + K P Sbjct: 172 PGDDKTSQLKIARADVADFLLKQLTTDTYLGKTP 205 >A3IRV6.1 A3IRV6_9CHRO Putative uncharacterized protein Length = 210 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 68/214 (31%), Positives = 120/214 (56%), Gaps = 14/214 (6%) Query: 1 MNITIFGASGAIGQLLTRLALDHGDFVTAYVRNAQKISLKHPNLSLIQGELSNASTIEEA 60 M + +FGA+G +GQ + + AL+ G VTA+ RN K+++KHP L+L QG++ ++ +++A Sbjct: 2 MKLVVFGATGNVGQQVVKQALEQGHEVTAFARNPLKLNIKHPKLTLFQGDVMESARVQQA 61 Query: 61 VAKSDVVISTLGPASDMSRKLKGTPIADGHELMIRAMKKLNKKRLITLATPALQSDDDKK 120 + D+V+ TLG +KL GT + G + +I AMKK KRLI T L + Sbjct: 62 LQGQDIVVCTLGSG----KKLTGTVRSQGTQNIILAMKKCGMKRLICQTTLGL--GESWG 115 Query: 121 NISTILPGVMAKVFLPNGYAEMKKMEGIIKQSNLDWTVVRIINPNVKHKGQSY-DYSLG- 178 +++ +M L N +A+ ++ E +K S+L+WT++R P +G+ +Y G Sbjct: 116 SLNFYWKYIMFGFILRNVFADHQQQEETVKNSDLEWTIIR---PAAFIEGECTGEYRHGF 172 Query: 179 ---DKSAKLSVSRENVAKIMYAATRDNQLIRKMP 209 DK++KL ++ +VA + D+ + + P Sbjct: 173 PGTDKTSKLKITHADVADFILKQLVDDFYLYQAP 206 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.131 0.358 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,146,392,020 Number of extensions: 42694364 Number of successful extensions: 170670 Number of sequences better than 1.0e-05: 285 Number of HSP's gapped: 170845 Number of HSP's successfully gapped: 285 Length of query: 214 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 84 Effective length of database: 1,835,964,253 Effective search space: 154220997252 Effective search space used: 154220997252 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 128 (53.9 bits)