BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0513.0004.p (218 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q6HPC1.1 Q6HPC1_BACHK Protein disulfide isomerase (S-S rearranga... 278 2e-73 A0R8Y0.1 A0R8Y0_BACAH FrnE protein EC=5.3.4.1 277 4e-73 C1EUB9.1 C1EUB9_BACC3 Protein disulfide isomerase 276 1e-72 C2VMF6.1 C2VMF6_BACCE Putative uncharacterized protein 275 1e-72 B7HS11.1 B7HS11_BACC7 Protein disulfide isomerase 275 1e-72 >Q6HPC1.1 Q6HPC1_BACHK Protein disulfide isomerase (S-S rearrangase) EC=5.3.4.1 Length = 243 Score = 278 bits (712), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 121/207 (58%), Positives = 170/207 (82%) Query: 9 MKIEIWSDYVCPFCYIGKRRLESALEQFAHQNEVVIEYRSFELNPQGSMYSGKNMHQILS 68 MKIE+WSD+VCPFCYIGKRRLE ALEQF H+ +V +E++SFEL+P +YSG +++++L+ Sbjct: 1 MKIEVWSDFVCPFCYIGKRRLEMALEQFPHKKDVEVEFKSFELDPNAPIYSGTSINEVLA 60 Query: 69 EKHGMSIEQAKEANAKLGQQAAMMGLVYNFDQMKPTNTFDAHRLTQYAKSVGKDKELSEK 128 K+G+SIE+AK N +LG AA MGL +NFD+MKPTNTFDAHRL ++AK+ GK+KE++E Sbjct: 61 SKYGISIEEAKRNNVQLGNHAASMGLSFNFDEMKPTNTFDAHRLAKFAKNQGKEKEITEN 120 Query: 129 LFYSYYTEAKLISDHDTLADIAESVGMNRDETMEVLHDPSKYANEVHSDEATAKQLGITG 188 L ++Y+TE+K +SD DTLA IAE+ G+++ E ++V++D S YAN+V DEA A+Q I+G Sbjct: 121 LLFAYFTESKNLSDVDTLATIAEASGLDKQEALKVINDKSAYANDVRVDEAIAQQYQISG 180 Query: 189 APFFVIDRKYAISGAQPIEIFLSALNQ 215 P+F+I++KYAISGAQP+E F+ AL Q Sbjct: 181 VPYFIINQKYAISGAQPLETFVGALQQ 207 >A0R8Y0.1 A0R8Y0_BACAH FrnE protein EC=5.3.4.1 Length = 243 Score = 277 bits (709), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 120/207 (57%), Positives = 169/207 (81%) Query: 9 MKIEIWSDYVCPFCYIGKRRLESALEQFAHQNEVVIEYRSFELNPQGSMYSGKNMHQILS 68 MKIE+WSD+VCPFCYIGKRRLE ALEQF H+ +V +E++SFEL+P +YSG +++++L+ Sbjct: 1 MKIEVWSDFVCPFCYIGKRRLEMALEQFPHKKDVEVEFKSFELDPNAPIYSGTSINEVLA 60 Query: 69 EKHGMSIEQAKEANAKLGQQAAMMGLVYNFDQMKPTNTFDAHRLTQYAKSVGKDKELSEK 128 K+G+SIE+AK N +LG AA MGL +NFD+MKPTNTFDAHRL ++AK+ GK+KE++E Sbjct: 61 SKYGISIEEAKRNNVQLGNHAASMGLSFNFDEMKPTNTFDAHRLAKFAKNQGKEKEITEN 120 Query: 129 LFYSYYTEAKLISDHDTLADIAESVGMNRDETMEVLHDPSKYANEVHSDEATAKQLGITG 188 L ++Y+TE+K +SD DTLA IAE+ G++++E + V++D YAN+V DEA A+Q I+G Sbjct: 121 LLFAYFTESKNLSDVDTLATIAEAAGLDKEEALRVINDKKAYANDVRIDEAIAQQYQISG 180 Query: 189 APFFVIDRKYAISGAQPIEIFLSALNQ 215 P+F+I++KYAISGAQP+E F+ AL Q Sbjct: 181 VPYFIINQKYAISGAQPLETFVGALQQ 207 >C1EUB9.1 C1EUB9_BACC3 Protein disulfide isomerase Length = 243 Score = 276 bits (705), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 120/207 (57%), Positives = 169/207 (81%) Query: 9 MKIEIWSDYVCPFCYIGKRRLESALEQFAHQNEVVIEYRSFELNPQGSMYSGKNMHQILS 68 MKIE+WSD+VCPFCYIGKRRLE ALEQF H+ +V +E++SFEL+ +YSG +++++L+ Sbjct: 1 MKIEVWSDFVCPFCYIGKRRLEVALEQFPHKKDVEVEFKSFELDQNAPIYSGTSINEVLA 60 Query: 69 EKHGMSIEQAKEANAKLGQQAAMMGLVYNFDQMKPTNTFDAHRLTQYAKSVGKDKELSEK 128 K+G+SIE+AK N +LG AA MGL +NFD+MKPTNTFDAHRL ++AK GK+KE++EK Sbjct: 61 SKYGISIEEAKRNNVQLGNHAASMGLSFNFDEMKPTNTFDAHRLAKFAKDQGKEKEITEK 120 Query: 129 LFYSYYTEAKLISDHDTLADIAESVGMNRDETMEVLHDPSKYANEVHSDEATAKQLGITG 188 L ++Y+TE++ +SD DTLA IAE+ G+++ E ++V++D S YAN+V DEA A+Q I+G Sbjct: 121 LLFAYFTESRNLSDVDTLATIAEASGLDKQEALKVINDKSAYANDVRVDEAIAQQYQISG 180 Query: 189 APFFVIDRKYAISGAQPIEIFLSALNQ 215 P+F+I++KYAISGAQP+E F+ AL Q Sbjct: 181 VPYFIINQKYAISGAQPLETFVGALQQ 207 >C2VMF6.1 C2VMF6_BACCE Putative uncharacterized protein Length = 243 Score = 275 bits (704), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 121/207 (58%), Positives = 168/207 (81%) Query: 9 MKIEIWSDYVCPFCYIGKRRLESALEQFAHQNEVVIEYRSFELNPQGSMYSGKNMHQILS 68 MKIE+WSD+VCPFCYIGKRRLE ALEQF H+ +V +E++SFEL+P S+YSG +++++L+ Sbjct: 1 MKIEVWSDFVCPFCYIGKRRLEMALEQFPHKKDVEVEFKSFELDPNTSVYSGTSINEVLA 60 Query: 69 EKHGMSIEQAKEANAKLGQQAAMMGLVYNFDQMKPTNTFDAHRLTQYAKSVGKDKELSEK 128 K+G+SIE+AK N +LG AA MGL +NFD MKPTNTFDAHRL ++AK GK+KE++E Sbjct: 61 SKYGISIEEAKRNNVQLGNHAASMGLSFNFDGMKPTNTFDAHRLAKFAKDQGKEKEITEN 120 Query: 129 LFYSYYTEAKLISDHDTLADIAESVGMNRDETMEVLHDPSKYANEVHSDEATAKQLGITG 188 L ++Y+TE+K +SD DTLA IAE+ G+++ E + V++D + YAN+V DEA A+Q I+G Sbjct: 121 LLFAYFTESKNLSDVDTLATIAEASGLDKQEALHVINDKNAYANDVRIDEAVAQQYQISG 180 Query: 189 APFFVIDRKYAISGAQPIEIFLSALNQ 215 P+F+I++KYAISGAQP+E F+ AL Q Sbjct: 181 VPYFIINQKYAISGAQPLETFVGALQQ 207 >B7HS11.1 B7HS11_BACC7 Protein disulfide isomerase Length = 243 Score = 275 bits (704), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 120/207 (57%), Positives = 169/207 (81%) Query: 9 MKIEIWSDYVCPFCYIGKRRLESALEQFAHQNEVVIEYRSFELNPQGSMYSGKNMHQILS 68 MKIE+WSD+VCPFCYIGKRRLE ALEQF H+ +V +E++SFEL+ +YSG +++++L+ Sbjct: 1 MKIEVWSDFVCPFCYIGKRRLEVALEQFPHKKDVEVEFKSFELDQNAPIYSGTSINEVLA 60 Query: 69 EKHGMSIEQAKEANAKLGQQAAMMGLVYNFDQMKPTNTFDAHRLTQYAKSVGKDKELSEK 128 K+G+SIE+AK N +LG AA MGL +NFD+MKPTNTFDAHRL ++AK+ GK+KE++E Sbjct: 61 SKYGISIEEAKRNNVQLGNHAASMGLSFNFDEMKPTNTFDAHRLAKFAKNQGKEKEMTEN 120 Query: 129 LFYSYYTEAKLISDHDTLADIAESVGMNRDETMEVLHDPSKYANEVHSDEATAKQLGITG 188 L ++Y+TE+K +SD DTLA IAE+ G+++ E ++V++D S YAN+V DEA A+Q I+G Sbjct: 121 LLFAYFTESKNLSDVDTLASIAEASGLDKQEALQVINDKSAYANDVRVDEAIAQQYQISG 180 Query: 189 APFFVIDRKYAISGAQPIEIFLSALNQ 215 P+F+I++KYAISGAQP+E F+ AL Q Sbjct: 181 VPYFIINQKYAISGAQPLETFVGALQQ 207 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.130 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,196,029,619 Number of extensions: 44685596 Number of successful extensions: 125002 Number of sequences better than 1.0e-05: 673 Number of HSP's gapped: 123974 Number of HSP's successfully gapped: 673 Length of query: 218 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 88 Effective length of database: 1,835,964,253 Effective search space: 161564854264 Effective search space used: 161564854264 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 128 (53.9 bits)