BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0513.0001.p (144 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0ZA08.1 C0ZA08_BREBN Putative uncharacterized protein 269 6e-71 C0ZEV0.1 C0ZEV0_BREBN Putative uncharacterized protein 265 1e-69 C2QHT2.1 C2QHT2_BACCE Putative uncharacterized protein 109 8e-23 B1T3Q7.1 B1T3Q7_9BURK Putative uncharacterized protein 91 2e-17 A9QS36.1 A9QS36_PSESX Putative uncharacterized protein 91 3e-17 >C0ZA08.1 C0ZA08_BREBN Putative uncharacterized protein Length = 203 Score = 269 bits (687), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 132/144 (91%), Positives = 136/144 (94%), Gaps = 1/144 (0%) Query: 1 MNIRKRWIDESDVYILILGGFYGLTLPDDESKSYTQWEYEYAGETGKPRFAFVVTDERLR 60 M +RKRWIDESDVYILILGGFYGLTLPD ES SYT WEYEYAGE GKPRFAFVVTDE LR Sbjct: 61 MKMRKRWIDESDVYILILGGFYGLTLPD-ESMSYTHWEYEYAGEAGKPRFAFVVTDEALR 119 Query: 61 ELPYDFTAIEHYQKFQEFKQSVMEQVPTYYVEDVRHIKMVLRDQLPEYAARDDLYGWVSG 120 + PYDFTAIE+YQKFQEFKQSVMEQVPTYYVEDVRHIKMVLRDQLPEYAARDDLYGW SG Sbjct: 120 QQPYDFTAIEYYQKFQEFKQSVMEQVPTYYVEDVRHIKMVLRDQLPEYAARDDLYGWFSG 179 Query: 121 KDLPDVQKLLEENARLKAELEKKK 144 KD+PDVQKLLEENARLKAELEKKK Sbjct: 180 KDVPDVQKLLEENARLKAELEKKK 203 >C0ZEV0.1 C0ZEV0_BREBN Putative uncharacterized protein Length = 188 Score = 265 bits (676), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 130/144 (90%), Positives = 134/144 (93%), Gaps = 1/144 (0%) Query: 1 MNIRKRWIDESDVYILILGGFYGLTLPDDESKSYTQWEYEYAGETGKPRFAFVVTDERLR 60 M +RKRWIDESDVYILILGGFYGLTLPD ESKSYT WEYEYAGE GKPRFAFVVTDE LR Sbjct: 46 MKMRKRWIDESDVYILILGGFYGLTLPD-ESKSYTHWEYEYAGEAGKPRFAFVVTDEALR 104 Query: 61 ELPYDFTAIEHYQKFQEFKQSVMEQVPTYYVEDVRHIKMVLRDQLPEYAARDDLYGWVSG 120 PYDF AIE+YQKFQEFKQSVMEQ+P YYVEDVRHIKMVLRDQLPEYAARDDLYGW SG Sbjct: 105 LKPYDFAAIEYYQKFQEFKQSVMEQIPIYYVEDVRHIKMVLRDQLPEYAARDDLYGWFSG 164 Query: 121 KDLPDVQKLLEENARLKAELEKKK 144 KD+PDVQKLLEENARLKAELEKKK Sbjct: 165 KDVPDVQKLLEENARLKAELEKKK 188 >C2QHT2.1 C2QHT2_BACCE Putative uncharacterized protein Length = 323 Score = 109 bits (272), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 60/140 (42%), Positives = 86/140 (61%), Gaps = 7/140 (5%) Query: 5 KRWIDESDVYILILGGFYGLTLPDDESKSYTQWEYEYAGETGKPRFAFVVTDERLRELPY 64 K+WI+ESDVY+L+LGG YG ++ + SYT WEYEYAG+ KPRFA V+ D+ L E Sbjct: 52 KKWIEESDVYMLVLGGRYG-SIDHETGLSYTHWEYEYAGKLKKPRFAIVINDDALNEKVS 110 Query: 65 DFTAI----EHYQKFQEFKQSVMEQVPTYYVEDVRHIKMVLRDQLPEYAARDDLYGWVSG 120 + A E+Y + EFK+ V+ ++ +Y DVR IK+ + + L EY L GWVSG Sbjct: 111 KYGANVLERENYPNYVEFKKEVLSKISKFY-SDVRDIKIAVLESLKEYEKDKKLTGWVSG 169 Query: 121 KDLPD-VQKLLEENARLKAE 139 ++ D L+++N L E Sbjct: 170 LEIKDNASSLMKDNYNLMKE 189 >B1T3Q7.1 B1T3Q7_9BURK Putative uncharacterized protein Length = 335 Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 54/149 (36%), Positives = 85/149 (57%), Gaps = 7/149 (4%) Query: 1 MNIRKRWIDESDVYILILGGFYGLTLPDDESKSYTQWEYEYAGETGKPRFAFVVTDERLR 60 + + K WID SD+++L+LGG YG PD KSY Q EYE+A TGKP FA +TD ++ Sbjct: 48 IEVIKGWIDRSDIFMLVLGGRYGSVDPDS-GKSYIQLEYEHAVATGKPFFALYLTDVAIQ 106 Query: 61 ELP---YDFTAIEH--YQKFQEFKQSVMEQVPTYYVEDVRHIKMVLRDQLPEYAARDDLY 115 + A+E + EF+ V ++ + VED++ I++ + + + +A + L Sbjct: 107 KKAAGELGLAAVEQNDTKALNEFRAQVKSRLCSE-VEDLKDIRIHVPKAIRDLSAANKLE 165 Query: 116 GWVSGKDLPDVQKLLEENARLKAELEKKK 144 GWV +PDV L+ + A L+AE E+ K Sbjct: 166 GWVRASSVPDVSPLISQLASLQAENERLK 194 >A9QS36.1 A9QS36_PSESX Putative uncharacterized protein Length = 359 Score = 90.9 bits (224), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 54/155 (34%), Positives = 90/155 (58%), Gaps = 13/155 (8%) Query: 1 MNIRKRWIDESDVYILILGGFYGLTLPDDESKSYTQWEYEYAGETGKPRFAFVVT----D 56 M+ K+WIDESDVY+LILGG YG P SYT+ EY+YA E KP FA V+T + Sbjct: 48 MDTIKKWIDESDVYMLILGGRYGSMEPIS-GISYTELEYDYAVEQSKPLFAVVITEPALE 106 Query: 57 ERLRELPYDFTAIEHYQKFQEFKQSVMEQVPTYYVEDVRHIKMVLRDQLPEYAARDDLYG 116 +++ F E+ ++ + F+ V+ + +++ +D + I++ + + L ++A+ +L G Sbjct: 107 AKIKLSGTTFFEKENPKELKLFRTKVLSNISSFF-DDEKDIRLAVHESLSDFASSRELKG 165 Query: 117 WVSGKDLPD-------VQKLLEENARLKAELEKKK 144 WV ++ D ++KL EEN LK L ++K Sbjct: 166 WVQADEVIDTKPLFEEIKKLSEENHNLKNTLAEQK 200 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.138 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 938,794,775 Number of extensions: 39077277 Number of successful extensions: 112599 Number of sequences better than 1.0e-05: 22 Number of HSP's gapped: 112588 Number of HSP's successfully gapped: 22 Length of query: 144 Length of database: 3,060,696,203 Length adjustment: 107 Effective length of query: 37 Effective length of database: 2,052,647,598 Effective search space: 75947961126 Effective search space used: 75947961126 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 125 (52.8 bits)