BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0512.0012.p (360 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K5K0.1 B3K5K0_9BACI Beta-lactamase 297 1e-78 C0Z8X2.1 C0Z8X2_BREBN Putative uncharacterized protein 276 3e-72 C3BDG0.1 C3BDG0_BACMY Putative uncharacterized protein 215 6e-54 C2W842.1 C2W842_BACCE Putative uncharacterized protein 214 7e-54 C2QTD5.1 C2QTD5_BACCE Putative uncharacterized protein 214 9e-54 >B3K5K0.1 B3K5K0_9BACI Beta-lactamase Length = 681 Score = 297 bits (761), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 154/352 (43%), Positives = 211/352 (59%), Gaps = 5/352 (1%) Query: 12 IPGAGYAFETNYPKDYNGHTVVEKGGDLSGFHSNLWLLPGQNTGMFLALNSDK-GNLRLP 70 IP Y FE+ +NG TV+ KGGDL G+HS LWLLP QN G + +NSDK ++R Sbjct: 330 IPLTSYGFESFMHNSHNGQTVIGKGGDLEGYHSWLWLLPDQNVGGLIVVNSDKSASIRSE 389 Query: 71 FFEQFMSRYFPKTDAGPAFLKPAPDKQQLLRFEGLYRHLRTPVLRYDITATDGALIVRDA 130 FF FM ++PK ++QL +FEGLYR LRTP++ +TA G L+V+DA Sbjct: 390 FFVAFMDHFYPKKQGSENSF--PLHQEQLQKFEGLYRSLRTPIIATQVTAGQGELLVKDA 447 Query: 131 LGTHTLRQADDLLFYDEEGTPAGFKADADGNITYFSYNMTDSWAEKIPVPPIFSDVPVNH 190 +G H L+ L F DE G PA FK D +G++ Y Y DS +EK+P P ++DVP + Sbjct: 448 MGEHKLKPVGPLRFVDENGVPAAFKEDDNGDVAYMYYTAIDSMSEKLPNPAPYNDVPEEN 507 Query: 191 PYAKSIYYLVQLGAI-PGGTNEFKPDKAVTRGQFLSQIMPLAGFQLSTRPSVFSDTKGSP 249 PYAK IY+ L A G + F+PD+ +TR +F+S I LAG + S S+F D +G P Sbjct: 508 PYAKDIYFAQSLQAFGDKGQSSFRPDEPITRAEFVSVISRLAGMKPSESVSIFKDMQGHP 567 Query: 250 YEAVIQTAVDYGIVQGLPGSIFGPNQPLTREQAATFIWRMVKISLNADPVKADLKTPASP 309 +Q A + G V G F P+QP+TR++AA IWR +L A V A L+T + Sbjct: 568 LAGYVQNAANMGAVNGKTNQNFEPDQPITRQEAAAIIWRTAHHALGAKAVPAKLRTKPAA 627 Query: 310 WASEGVQYIAGQQLFGPDV-QAANGALEYRPKDPMLNKEAAVLIYKLVQKLF 360 WA E VQ++ G + GP+V + ANGA +YRP D +L KEAA + KL+Q+ F Sbjct: 628 WADEAVQFMVGTGMHGPEVTKDANGAADYRPTDNLLRKEAAAIYAKLIQQAF 679 >C0Z8X2.1 C0Z8X2_BREBN Putative uncharacterized protein Length = 667 Score = 276 bits (705), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 136/364 (37%), Positives = 215/364 (59%), Gaps = 7/364 (1%) Query: 1 MEHTSVTIHPDIPGAGYAFETNYPKDYNGHTVVEKGGDLSGFHSNLWLLPGQNTGMFLAL 60 M +++HP + FE ++YNG V+EK GDL G+H+ +WL+P + G+F+ + Sbjct: 307 MHRPHLSVHPKLNNMALGFEYANQQNYNGQYVIEKAGDLQGYHTGMWLIPEEKVGVFVTV 366 Query: 61 NSDKGNLRLPFFEQFMSRYFPKTDAGPAFLKPAPDKQQLLRFEGLYRHLRTPVLRYDITA 120 N D +R+P + FM Y+PK + + A KQ+L +FEG Y LR + I A Sbjct: 367 NKDY-EIRIPLIKAFMDHYYPKNEQKKGVFELA--KQELTKFEGTYSDLRNRMWTTRIRA 423 Query: 121 TDGALIVRDALGTHTLRQADDLLFYDEEGTPAGFKADADGNITYFSYNM-TDSWAEKIPV 179 G LIV+D+LG H L + + LLF DE+G+ A FK + G++ F Y + +DSWAEK+P Sbjct: 424 EGGKLIVKDSLGEHVLYEVEPLLFQDEQGSKAAFKLNDHGDVRAFYYELKSDSWAEKMPE 483 Query: 180 PPIFSDVPVNHPYAKSIYYLVQLGAIPG--GTNEFKPDKAVTRGQFLSQIMPLAGFQLST 237 P + DV +HPYA IY+L Q+G G N F P++ +T+G+F+ + +G S Sbjct: 484 PQRYQDVENDHPYASYIYHLRQIGVFADMEGDNRFSPEQQITKGEFVGWFIKWSGIAPSK 543 Query: 238 RPSVFSDTKGSPYEAVIQTAVDYGIVQGLPGSIFGPNQPLTREQAATFIWRMVKISLNAD 297 +++D G+ Y IQ+A + G+++ F PN+PLTR++AA+ +WRM L+A+ Sbjct: 544 HKPIYTDLSGNKYAREIQSAYELGLLKASADGKFYPNEPLTRQEAASIVWRMAFGYLHAE 603 Query: 298 PVKADLKTPASPWASEGVQYIAGQQLFGPD-VQAANGALEYRPKDPMLNKEAAVLIYKLV 356 P KA L WA EGV ++ + L+GP+ V+ +G+L+Y+ + M+ KEAA L+ + Sbjct: 604 PKKAKLSGRTDAWALEGVHFVVAKGLYGPEVVKGRDGSLDYKSEQLMVRKEAAALLSRFA 663 Query: 357 QKLF 360 +LF Sbjct: 664 DQLF 667 >C3BDG0.1 C3BDG0_BACMY Putative uncharacterized protein Length = 525 Score = 215 bits (547), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 136/358 (37%), Positives = 188/358 (52%), Gaps = 12/358 (3%) Query: 1 MEHTSVTIHPDIPGAGYAFETNYPKDYNGHTVVEKGGDLSGFHSNLWLLPGQNTGMFLAL 60 M+ T +HP P Y FE P+ +NG V KGG++ GF S +WL+P G+F+ Sbjct: 167 MQQTKFALHPKYPNMTYGFEFFSPQSHNGQYVFGKGGNIPGFSSLMWLIPEHKLGVFVVT 226 Query: 61 NSDKGNLRLPFFEQFMSRYFPKTDAGPAFLKPAPDKQQLLRFEGLYRHLRTPVLRYDITA 120 N D L F++FM+ YFP P +LKP+ +++L +FEG+YR LR L + Sbjct: 227 NKDSSLLPYKLFDEFMNHYFPDK-TKPEYLKPS--EEELKKFEGVYRDLRVKNLITHVKI 283 Query: 121 TDGALIVRDA-LGTHTLRQADDLLFYDEEGTPAGFKADADGNITYFSYNMTDSWAEKIPV 179 ++G L V D G L+Q D LLF DE+G FK DG + + + S A K+ Sbjct: 284 SEGKLFVADKRYGKQELKQIDPLLFEDEKGNYMAFKLHKDGTVKEIIHWNSGSSAVKLSE 343 Query: 180 PPIFSDVPVNHPYAKSIYYLVQLGAIPGGTN-EFKPDKAVTRGQF---LSQIMPLAGFQL 235 P F DV VNHPYAK I L Q + F P+ +TRG+F LSQI A Sbjct: 344 PKRFQDVEVNHPYAKFIDPLHQYDILKANKEGNFVPEAPLTRGEFSYWLSQIAYFA--PP 401 Query: 236 STRPSVFSDTKGSPYEAVIQTAVDYGIVQGLPGSIFGPNQPLTREQAATFIWRMVKISLN 295 S + VFSD KG Y + IQ + GI+ G F P++ +TR++AA W +++ L Sbjct: 402 SKKDPVFSDVKGHQYASHIQKLYELGILYEKEGEQFYPDRAITRQEAAWIAWHYLEM-LE 460 Query: 296 ADPVKADLKTPASPWASEGVQYIAGQQLFGPDV-QAANGALEYRPKDPMLNKEAAVLI 352 A P KA LK WA E V+ I G L GP+V +G+ +Y K M +EAA L+ Sbjct: 461 APPAKATLKGETDDWAMESVKNIVGHHLVGPEVIYNEDGSADYLSKQIMKRQEAAALL 518 >C2W842.1 C2W842_BACCE Putative uncharacterized protein Length = 641 Score = 214 bits (546), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 132/357 (36%), Positives = 189/357 (52%), Gaps = 8/357 (2%) Query: 1 MEHTSVTIHPDIPGAGYAFETNYPKDYNGHTVVEKGGDLSGFHSNLWLLPGQNTGMFLAL 60 M+ T +HP P Y FE P+ +NG V KGG++ GF S +WL+P G+F+ Sbjct: 283 MQKTKFALHPKYPNMAYGFEFFSPQSHNGQYVFGKGGNIPGFSSLMWLIPEHKIGVFVVT 342 Query: 61 NSDKGNLRLPFFEQFMSRYFPKTDAGPAFLKPAPDKQQLLRFEGLYRHLRTPVLRYDITA 120 N D +L F++FM+ YFP P +LKP+ +++L +FEG+YR LR L + Sbjct: 343 NKDASSLPYELFDEFMNHYFPDK-TKPEYLKPS--EEELKKFEGVYRDLRVKNLITHVKI 399 Query: 121 TDGALIVRDA-LGTHTLRQADDLLFYDEEGTPAGFKADADGNITYFSYNMTDSWAEKIPV 179 ++G L V D G L+Q D LLF DE+G FK + DG + + + S A K+ Sbjct: 400 SEGKLFVADKRYGKQELKQIDPLLFEDEKGNYMAFKLNKDGTVKEMIHWNSGSSAVKLSE 459 Query: 180 PPIFSDVPVNHPYAKSIYYLVQLGAIPGGTN-EFKPDKAVTRGQFLSQIMPLAGFQ-LST 237 P F DV VNHPYAK I L Q + F P+ +TRG+F + +A F S Sbjct: 460 PKRFQDVEVNHPYAKFIDPLHQYDILKANKEGNFVPEAPLTRGEFSYWLSQIAYFVPPSK 519 Query: 238 RPSVFSDTKGSPYEAVIQTAVDYGIVQGLPGSIFGPNQPLTREQAATFIWRMVKISLNAD 297 + VFSD KG Y + IQ + GI+ G F P++ +TR++AA W +++ L A Sbjct: 520 KDPVFSDVKGHQYASHIQKLYELGILYEKEGEQFYPDRAITRQEAAWIAWHYLEM-LEAP 578 Query: 298 PVKADLKTPASPWASEGVQYIAGQQLFGPDV-QAANGALEYRPKDPMLNKEAAVLIY 353 P +A LK WA E V+ I G L GP+V +G +Y K M +EAA L++ Sbjct: 579 PAEAILKGETDDWAIESVKNIVGHHLVGPEVIYNEDGLADYLSKQIMKRQEAAALLF 635 >C2QTD5.1 C2QTD5_BACCE Putative uncharacterized protein Length = 660 Score = 214 bits (546), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 131/357 (36%), Positives = 188/357 (52%), Gaps = 8/357 (2%) Query: 1 MEHTSVTIHPDIPGAGYAFETNYPKDYNGHTVVEKGGDLSGFHSNLWLLPGQNTGMFLAL 60 M+ T +HP P Y FE P+ +NG V KGG++ GF S +WL+P G+F+ Sbjct: 302 MQKTKFALHPKYPNMTYGFEFFSPQSHNGQYVFGKGGNIPGFSSLMWLIPEHKIGVFVVT 361 Query: 61 NSDKGNLRLPFFEQFMSRYFPKTDAGPAFLKPAPDKQQLLRFEGLYRHLRTPVLRYDITA 120 N D L + F+ FM++YFP P +LK P++++L +FEG+YR LR L + Sbjct: 362 NKDSSALPVEVFDDFMNQYFPDK-TKPEYLK--PNEEELKKFEGVYRDLRLKNLMSHVNI 418 Query: 121 TDGALIVRD-ALGTHTLRQADDLLFYDEEGTPAGFKADADGNITYFSYNMTDSWAEKIPV 179 ++G L V D A G L+Q D LLF DE+G FK DG + + + S A K+ Sbjct: 419 SEGKLYVSDKAYGKQELKQIDPLLFEDEKGNYMAFKLHKDGTVKEMIHWNSGSSAMKLSE 478 Query: 180 PPIFSDVPVNHPYAKSIYYLVQLGAIPGGTN-EFKPDKAVTRGQFLSQIMPLAGFQ-LST 237 P F DV NHPYAK I L Q + F P+ ++TR +F + +A F S Sbjct: 479 PERFKDVDENHPYAKFINPLHQYEVLQANKEGNFTPESSLTRAEFAYWLSQIAYFTPPSK 538 Query: 238 RPSVFSDTKGSPYEAVIQTAVDYGIVQGLPGSIFGPNQPLTREQAATFIWRMVKISLNAD 297 + VFSD K PY IQ + GI+ G F P++ +TR++AA W+ +K+ L A Sbjct: 539 KEPVFSDVKNHPYAPHIQKLYEIGILYEKEGEQFHPDRAITRQEAAWITWQYLKM-LGAP 597 Query: 298 PVKADLKTPASPWASEGVQYIAGQQLFGPDV-QAANGALEYRPKDPMLNKEAAVLIY 353 A LK WA E V+ I G +L GP+V +G+ +Y K M +EAA L++ Sbjct: 598 SADATLKGETDDWAIESVKNIVGHRLVGPEVIYNEDGSADYLSKQSMKRQEAAALLF 654 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.138 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,413,981,133 Number of extensions: 108831962 Number of successful extensions: 197897 Number of sequences better than 1.0e-05: 198 Number of HSP's gapped: 198349 Number of HSP's successfully gapped: 198 Length of query: 360 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 223 Effective length of database: 1,770,017,148 Effective search space: 394713824004 Effective search space used: 394713824004 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)