BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0512.0011.p (263 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0Z8X2.1 C0Z8X2_BREBN Putative uncharacterized protein 232 3e-59 B3K5K0.1 B3K5K0_9BACI Beta-lactamase 220 1e-55 C3C2S4.1 C3C2S4_BACTU Putative uncharacterized protein 215 3e-54 C2NK10.1 C2NK10_BACCE Putative uncharacterized protein 215 3e-54 C1EKV4.1 C1EKV4_BACC3 Putative penicillin-binding protein 214 6e-54 >C0Z8X2.1 C0Z8X2_BREBN Putative uncharacterized protein Length = 667 Score = 232 bits (591), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 111/211 (52%), Positives = 145/211 (68%), Gaps = 6/211 (2%) Query: 9 DKAGVEAFATQFFEQKEVKEQLAGALLVIVKDGQVLLNKGYGYADIAAKRPVDADTTLFR 68 D VE FA +FF Q E+K +AGA V+VK +VL KGYGYAD+ K PVD D T+FR Sbjct: 43 DPREVEQFADEFFNQSEIKNNMAGASFVVVKGDKVLFKKGYGYADVEKKIPVDPDRTVFR 102 Query: 69 LASVSKLFTAAGIMQLAEAGKVDLDKDVQTYLPDLKIPNTTGAPLTLKHLMTHTTGFDNA 128 +ASVSK+ TA +MQLAE GK+DL+KDV Y+ +IPN TG PLT+KHL+T++TGFD Sbjct: 103 VASVSKVITATAVMQLAEQGKIDLNKDVSAYMGGARIPNKTGTPLTMKHLLTNSTGFDFG 162 Query: 129 DNVDSD-----RSYTLKNYLNDMMPTVVRKPGEVFRYDNFAFTLQGYIIEQVSGLPFQDY 183 D D R LK ++ D +P V+RKPGE +RYDN F +QGY++EQV+G PF +Y Sbjct: 163 DTSDGSTTDLKREVPLKKFVMDNLPNVIRKPGEFYRYDNLGFDIQGYVVEQVAGKPFGEY 222 Query: 184 VSKNIFNPLGMDSSSFIFNDKVKQAIATPYD 214 V + IF PLGM++S F VK+ +A PY+ Sbjct: 223 VQERIFKPLGMENSDFRLTSIVKE-LAVPYN 252 >B3K5K0.1 B3K5K0_9BACI Beta-lactamase Length = 681 Score = 220 bits (561), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 103/208 (49%), Positives = 146/208 (70%), Gaps = 6/208 (2%) Query: 13 VEAFATQFFEQKEVKEQLAGALLVIVKDGQVLLNKGYGYADIAAKRPVDADTTLFRLASV 72 V+AFA +F +V + LAGAL+V+V+D +VLLN GYGYAD+ +K+ +D D TLFR+AS+ Sbjct: 58 VKAFADAYFADPQVSDMLAGALVVVVQDDKVLLNTGYGYADLESKKKIDPDRTLFRMASI 117 Query: 73 SKLFTAAGIMQLAEAGKVDLDKDVQTYLPDLKIPNTTGAPLTLKHLMTHTTGFDNAD--- 129 SK TA +MQL E GK+DL +++ Y+PD+KIPN TGAP+T++HL+THTTGFD D Sbjct: 118 SKSVTATAVMQLIENGKIDLKQNITEYMPDVKIPNHTGAPVTVEHLLTHTTGFDFTDSYS 177 Query: 130 ---NVDSDRSYTLKNYLNDMMPTVVRKPGEVFRYDNFAFTLQGYIIEQVSGLPFQDYVSK 186 ++ L +++ P VVR PGEV+RYDN A ++QGYI++ VSG PF+ Y+ K Sbjct: 178 VPPHIIQKGEIPLADFIRVNAPAVVRTPGEVYRYDNLASSMQGYIVQSVSGEPFEKYIKK 237 Query: 187 NIFNPLGMDSSSFIFNDKVKQAIATPYD 214 IF+PL M ++F ND + +AT Y+ Sbjct: 238 QIFDPLNMKHAAFRMNDDIIANLATGYN 265 >C3C2S4.1 C3C2S4_BACTU Putative uncharacterized protein Length = 660 Score = 215 bits (548), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 103/215 (47%), Positives = 143/215 (66%), Gaps = 6/215 (2%) Query: 6 VKLDKAGVEAFATQFFEQKEVKEQLAGALLVIVKDGQVLLNKGYGYADIAAKRPVDADTT 65 + L+ VEAF + +K KE AG LV+VKD Q+L KG+G++D P+D T Sbjct: 33 ITLNPKDVEAFTNKVIPEKMKKENAAGVALVVVKDNQILFQKGFGFSDKEKNTPIDPKKT 92 Query: 66 LFRLASVSKLFTAAGIMQLAEAGKVDLDKDVQTYLPDLKIPNTTGAPLTLKHLMTHTTGF 125 +FRLAS+SK+FTA+ +MQL E GK+D++KD+ Y+ LK N G P+T++HL+THTTGF Sbjct: 93 VFRLASISKVFTASAVMQLVEQGKIDINKDIVNYMGGLKYQNNRGEPVTMEHLLTHTTGF 152 Query: 126 DNADNVDSDRSY------TLKNYLNDMMPTVVRKPGEVFRYDNFAFTLQGYIIEQVSGLP 179 D D D Y LK+Y+ D MPTVVRKPG+ + YDNFA LQGYI++ ++ P Sbjct: 153 DYVDPRPEDIHYQENDYTMLKDYVEDNMPTVVRKPGDTYTYDNFASMLQGYIVQNLTNTP 212 Query: 180 FQDYVSKNIFNPLGMDSSSFIFNDKVKQAIATPYD 214 F Y++KNIF PL M +SSF+ + +K+ +AT YD Sbjct: 213 FYKYMAKNIFYPLEMHNSSFVMTNFIKEKLATGYD 247 >C2NK10.1 C2NK10_BACCE Putative uncharacterized protein Length = 660 Score = 215 bits (548), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 102/217 (47%), Positives = 144/217 (66%), Gaps = 6/217 (2%) Query: 4 SAVKLDKAGVEAFATQFFEQKEVKEQLAGALLVIVKDGQVLLNKGYGYADIAAKRPVDAD 63 + + L+ VEAF + +K KE AG L++VKD Q+L KG+G++D P+D Sbjct: 31 APITLNPKEVEAFTNKVIPEKMKKENAAGVALIVVKDNQILFQKGFGFSDKEKNTPIDPK 90 Query: 64 TTLFRLASVSKLFTAAGIMQLAEAGKVDLDKDVQTYLPDLKIPNTTGAPLTLKHLMTHTT 123 T+FRLAS+SK+FTA+ +MQL E GK+DL+KD+ Y+ LK N G P+T++HL+THTT Sbjct: 91 KTVFRLASISKVFTASAVMQLVEQGKIDLNKDIVNYMGGLKYQNNMGEPVTMEHLLTHTT 150 Query: 124 GFDNADNVDSDRSY------TLKNYLNDMMPTVVRKPGEVFRYDNFAFTLQGYIIEQVSG 177 GFD D D Y LK+Y+ D MPTVVRKPG+ + YDNFA LQGYI++ ++ Sbjct: 151 GFDYVDPRPEDIHYQDNDYTMLKDYVEDNMPTVVRKPGDTYTYDNFASMLQGYIVQNLTN 210 Query: 178 LPFQDYVSKNIFNPLGMDSSSFIFNDKVKQAIATPYD 214 PF Y++KN+F PL M +SSF+ + +K+ +AT YD Sbjct: 211 TPFYKYMAKNVFYPLEMHNSSFVMTNFIKEKLATGYD 247 >C1EKV4.1 C1EKV4_BACC3 Putative penicillin-binding protein Length = 667 Score = 214 bits (545), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 103/217 (47%), Positives = 143/217 (65%), Gaps = 6/217 (2%) Query: 4 SAVKLDKAGVEAFATQFFEQKEVKEQLAGALLVIVKDGQVLLNKGYGYADIAAKRPVDAD 63 + + L+ VEAF + +K KE AG L+IVKD Q+L KG+G++D P+D Sbjct: 38 APITLNPKEVEAFTNKVIPEKMKKENAAGVALIIVKDNQILFQKGFGFSDKEKNTPIDPK 97 Query: 64 TTLFRLASVSKLFTAAGIMQLAEAGKVDLDKDVQTYLPDLKIPNTTGAPLTLKHLMTHTT 123 T+FRLAS+SK+FTA+ +MQL E GK+DL+KD+ Y+ LK N P+T++HL+THTT Sbjct: 98 KTVFRLASISKVFTASAVMQLVEQGKIDLNKDIVNYMGGLKYQNNMSEPVTMEHLLTHTT 157 Query: 124 GFDNADNVDSDRSY------TLKNYLNDMMPTVVRKPGEVFRYDNFAFTLQGYIIEQVSG 177 GFD D D Y LK+Y+ D MPTVVRKPG+ + YDNFA LQGYI++ ++ Sbjct: 158 GFDYVDPRPEDIHYQDNDYTMLKDYVEDNMPTVVRKPGDTYTYDNFASMLQGYIVQNLTN 217 Query: 178 LPFQDYVSKNIFNPLGMDSSSFIFNDKVKQAIATPYD 214 PF Y++KNIF PL M +SSF+ + +K+ +AT YD Sbjct: 218 TPFYKYMAKNIFYPLEMHNSSFVMTNFIKEKLATGYD 254 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.134 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,561,320,814 Number of extensions: 62486225 Number of successful extensions: 145318 Number of sequences better than 1.0e-05: 3369 Number of HSP's gapped: 141875 Number of HSP's successfully gapped: 3380 Length of query: 263 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 130 Effective length of database: 1,807,701,208 Effective search space: 235001157040 Effective search space used: 235001157040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)