BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0512.0007.p
         (118 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C2Z0P1.1 C2Z0P1_BACCE ThiJ/pfpI                                       215   1e-54
C2QHV6.1 C2QHV6_BACCE ThiJ/pfpI                                       213   5e-54
B1HMI3.1 B1HMI3_LYSSC ThiJ/PfpI family protein                        211   2e-53
C2XUI1.1 C2XUI1_BACCE ThiJ/pfpI                                       209   5e-53
Q5WBK8.1 Q5WBK8_BACSK ThiJ/PfpI family intracellular protease         209   6e-53

>C2Z0P1.1 C2Z0P1_BACCE ThiJ/pfpI
          Length = 210

 Score =  215 bits (547), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 96/118 (81%), Positives = 109/118 (92%)

Query: 1   LKRVGEALKRGAIVAAICGATEGLANMGYLDSRKHTSNDLEYLKMVCPQYKGEKFYEPGP 60
           L+R+G+ALK G I+AAICGATEGLANMGYLD+RKHTSN+LEY KMVCP YKGEKFYE G 
Sbjct: 93  LERIGQALKLGTIIAAICGATEGLANMGYLDTRKHTSNNLEYTKMVCPNYKGEKFYELGS 152

Query: 61  AAADTNLVTASGVAPLEFAVEVLKQLDVFAPDTLHSWYNLNKTHQPEYFFQLMSSINR 118
           A +D NLVTASG+APLEFA+EVLK++DVF PDTLHSWYNLNKTHQPEYFFQLM+SIN+
Sbjct: 153 AVSDANLVTASGIAPLEFAMEVLKKIDVFTPDTLHSWYNLNKTHQPEYFFQLMNSINK 210


>C2QHV6.1 C2QHV6_BACCE ThiJ/pfpI
          Length = 210

 Score =  213 bits (542), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 99/118 (83%), Positives = 107/118 (90%)

Query: 1   LKRVGEALKRGAIVAAICGATEGLANMGYLDSRKHTSNDLEYLKMVCPQYKGEKFYEPGP 60
           LK++GEALK G IVAAICGAT GLANMGYLDSRKHTSNDLEYLKMVCP YKGEK YE GP
Sbjct: 93  LKKIGEALKLGTIVAAICGATVGLANMGYLDSRKHTSNDLEYLKMVCPHYKGEKLYEMGP 152

Query: 61  AAADTNLVTASGVAPLEFAVEVLKQLDVFAPDTLHSWYNLNKTHQPEYFFQLMSSINR 118
             +  NLVTASGVAPLEFA+EVL++LDVFAPDTLH WYNLNKTHQPEYFFQLM+S+NR
Sbjct: 153 VVSCENLVTASGVAPLEFAMEVLEKLDVFAPDTLHPWYNLNKTHQPEYFFQLMNSVNR 210


>B1HMI3.1 B1HMI3_LYSSC ThiJ/PfpI family protein
          Length = 210

 Score =  211 bits (536), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 96/117 (82%), Positives = 106/117 (90%)

Query: 1   LKRVGEALKRGAIVAAICGATEGLANMGYLDSRKHTSNDLEYLKMVCPQYKGEKFYEPGP 60
           L+R+GEALK G IVAAICGATE LANMGYLDSRKHTSNDLEY+KMVCP YKGEKF+E GP
Sbjct: 93  LRRIGEALKLGTIVAAICGATEALANMGYLDSRKHTSNDLEYIKMVCPNYKGEKFHEMGP 152

Query: 61  AAADTNLVTASGVAPLEFAVEVLKQLDVFAPDTLHSWYNLNKTHQPEYFFQLMSSIN 117
           A +  NL+TASGVAPLEF +EVLK+LDVF PDTLHSWYNLNKTH+ EYFFQLM+SIN
Sbjct: 153 AVSGVNLITASGVAPLEFTMEVLKKLDVFTPDTLHSWYNLNKTHKTEYFFQLMNSIN 209


>C2XUI1.1 C2XUI1_BACCE ThiJ/pfpI
          Length = 210

 Score =  209 bits (533), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 96/117 (82%), Positives = 107/117 (91%)

Query: 1   LKRVGEALKRGAIVAAICGATEGLANMGYLDSRKHTSNDLEYLKMVCPQYKGEKFYEPGP 60
           L+R+G+ALK G IVAAICGATE LANMGYLD+RKHTSN+LEY KMVCP YKGEKFYE   
Sbjct: 93  LERIGQALKLGTIVAAICGATEALANMGYLDTRKHTSNNLEYTKMVCPNYKGEKFYELRS 152

Query: 61  AAADTNLVTASGVAPLEFAVEVLKQLDVFAPDTLHSWYNLNKTHQPEYFFQLMSSIN 117
           A +D NLVTASG+APLEFA+EVLK+LDVFAPDTLHSWYNLNKTH+PEYFFQLM+SIN
Sbjct: 153 AVSDANLVTASGIAPLEFAMEVLKKLDVFAPDTLHSWYNLNKTHKPEYFFQLMNSIN 209


>Q5WBK8.1 Q5WBK8_BACSK ThiJ/PfpI family intracellular protease
          Length = 209

 Score =  209 bits (532), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 98/117 (83%), Positives = 106/117 (90%)

Query: 1   LKRVGEALKRGAIVAAICGATEGLANMGYLDSRKHTSNDLEYLKMVCPQYKGEKFYEPGP 60
           LK+ G+ALK G IVAAICGATEGLAN GYLDSRKHTSNDLEYLKMVCP YKGEKFYE  P
Sbjct: 92  LKKTGDALKLGTIVAAICGATEGLANFGYLDSRKHTSNDLEYLKMVCPSYKGEKFYEMRP 151

Query: 61  AAADTNLVTASGVAPLEFAVEVLKQLDVFAPDTLHSWYNLNKTHQPEYFFQLMSSIN 117
           A +D NLVTASGVAPLEF +EVL++LDVFAPDTLHSWYNLNKTH+ EYFFQLM+SIN
Sbjct: 152 AVSDENLVTASGVAPLEFTMEVLEKLDVFAPDTLHSWYNLNKTHRAEYFFQLMNSIN 208


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.134    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 697,957,431
Number of extensions: 25370236
Number of successful extensions: 59484
Number of sequences better than 1.0e-05: 161
Number of HSP's gapped: 59469
Number of HSP's successfully gapped: 161
Length of query: 118
Length of database: 3,060,696,203
Length adjustment: 84
Effective length of query: 34
Effective length of database: 2,269,330,943
Effective search space: 77157252062
Effective search space used: 77157252062
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)