BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0512.0004.p
         (126 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KGU4.1 B3KGU4_9BACI Putative uncharacterized protein                155   1e-36
C3G6Z8.1 C3G6Z8_BACTU Putative uncharacterized protein                140   6e-32
C2YEC8.1 C2YEC8_BACCE Putative uncharacterized protein                139   6e-32
C1EPP0.1 C1EPP0_BACC3 Putative uncharacterized protein                139   7e-32
A0RHQ0.1 A0RHQ0_BACAH Putative uncharacterized protein                139   7e-32

>B3KGU4.1 B3KGU4_9BACI Putative uncharacterized protein
          Length = 178

 Score =  155 bits (392), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 70/107 (65%), Positives = 89/107 (83%)

Query: 12  LEYAYQVETFERRDLTEEELARWGAALNLGEEGREQIKGNELSYYMDQLDAVRRTTLEWF 71
           +EYAYQV TFE R+L+E+EL +WG  LNLG+EGR  I+G EL+YY+++L+ VR  T E F
Sbjct: 67  VEYAYQVSTFEERELSEDELRKWGPGLNLGDEGRAAIRGRELNYYIERLNEVRNRTFELF 126

Query: 72  QTVDDEWLYKEEPFWGDQPANYYFMWFHVFEDEINHRGQIRMIRKRC 118
           ++V DEWLY E+PFW ++ ANYYFMWFHVFEDEINHRGQIR+IRK+ 
Sbjct: 127 RSVTDEWLYIEQPFWYNKHANYYFMWFHVFEDEINHRGQIRLIRKKL 173


>C3G6Z8.1 C3G6Z8_BACTU Putative uncharacterized protein
          Length = 174

 Score =  140 bits (352), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 64/114 (56%), Positives = 82/114 (71%)

Query: 3   GEQCYQGRILEYAYQVETFERRDLTEEELARWGAALNLGEEGREQIKGNELSYYMDQLDA 62
           G   Y    +E+ YQ+ TFE R+ TE EL RW  A+ LG+ GRE+IKGN + +Y++ L  
Sbjct: 53  GMLLYHMAAIEFYYQIHTFEDREPTEAELERWLPAIELGDLGREKIKGNSIEFYINTLQE 112

Query: 63  VRRTTLEWFQTVDDEWLYKEEPFWGDQPANYYFMWFHVFEDEINHRGQIRMIRK 116
           VR  T+E FQ++ DEWL+K   FW D+PAN YF WFHVFEDEINHRGQIR+I+K
Sbjct: 113 VRSKTIETFQSLPDEWLFKTTDFWYDKPANNYFKWFHVFEDEINHRGQIRLIKK 166


>C2YEC8.1 C2YEC8_BACCE Putative uncharacterized protein
          Length = 174

 Score =  139 bits (351), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 65/114 (57%), Positives = 80/114 (70%)

Query: 3   GEQCYQGRILEYAYQVETFERRDLTEEELARWGAALNLGEEGREQIKGNELSYYMDQLDA 62
           G   Y    +E+ YQ+ TFE R+ TE EL  W  A+ LG  GRE+IKGN L +Y++ L  
Sbjct: 53  GMLLYHMAAIEFYYQIHTFEDREPTEAELEHWLPAIELGNLGREKIKGNSLEFYINTLQE 112

Query: 63  VRRTTLEWFQTVDDEWLYKEEPFWGDQPANYYFMWFHVFEDEINHRGQIRMIRK 116
           VR  T+E FQ++ DEWL+K   FW D+PAN YF WFHVFEDEINHRGQIR+IRK
Sbjct: 113 VRSKTIETFQSLPDEWLFKTTDFWYDKPANNYFKWFHVFEDEINHRGQIRLIRK 166


>C1EPP0.1 C1EPP0_BACC3 Putative uncharacterized protein
          Length = 174

 Score =  139 bits (350), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 64/114 (56%), Positives = 82/114 (71%)

Query: 3   GEQCYQGRILEYAYQVETFERRDLTEEELARWGAALNLGEEGREQIKGNELSYYMDQLDA 62
           G   Y    +E+ YQ+ TFE R+ TE EL RW  A+ LG+ GRE+IKGN + +Y++ L  
Sbjct: 53  GMLLYHMAAIEFYYQIHTFEDREPTEAELERWLPAIELGDLGREKIKGNAIEFYINTLQE 112

Query: 63  VRRTTLEWFQTVDDEWLYKEEPFWGDQPANYYFMWFHVFEDEINHRGQIRMIRK 116
           VR  T+E FQ++ DEWL+K   FW D+PAN YF WFHVFEDEINHRGQIR+I+K
Sbjct: 113 VRSKTIETFQSLPDEWLFKTTDFWYDKPANNYFKWFHVFEDEINHRGQIRLIKK 166


>A0RHQ0.1 A0RHQ0_BACAH Putative uncharacterized protein
          Length = 174

 Score =  139 bits (350), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 64/114 (56%), Positives = 82/114 (71%)

Query: 3   GEQCYQGRILEYAYQVETFERRDLTEEELARWGAALNLGEEGREQIKGNELSYYMDQLDA 62
           G   Y    +E+ YQ+ TFE R+ TE EL RW  A+ LG+ GRE+IKGN + +Y++ L  
Sbjct: 53  GMLLYHMAAIEFYYQIHTFEDREPTEAELERWLPAIELGDLGREKIKGNAIEFYINTLQE 112

Query: 63  VRRTTLEWFQTVDDEWLYKEEPFWGDQPANYYFMWFHVFEDEINHRGQIRMIRK 116
           VR  T+E FQ++ DEWL+K   FW D+PAN YF WFHVFEDEINHRGQIR+I+K
Sbjct: 113 VRSKTIETFQSLPDEWLFKTTDFWYDKPANNYFKWFHVFEDEINHRGQIRLIKK 166


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.321    0.139    0.455 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 791,380,093
Number of extensions: 31164391
Number of successful extensions: 124921
Number of sequences better than 1.0e-05: 146
Number of HSP's gapped: 124846
Number of HSP's successfully gapped: 146
Length of query: 126
Length of database: 3,060,696,203
Length adjustment: 91
Effective length of query: 35
Effective length of database: 2,203,383,838
Effective search space: 77118434330
Effective search space used: 77118434330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)