BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0512.0001.p (185 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A6CNM2.1 A6CNM2_9BACI Putative uncharacterized protein 271 2e-71 Q8ETI2.1 Q8ETI2_OCEIH Hypothetical conserved protein 258 1e-67 Q73AR1.1 Q73AR1_BACC1 Isochorismatase family protein 256 7e-67 A9VMJ1.1 A9VMJ1_BACWK Isochorismatase hydrolase 254 2e-66 C2SHY8.1 C2SHY8_BACCE Isochorismatase 254 2e-66 >A6CNM2.1 A6CNM2_9BACI Putative uncharacterized protein Length = 185 Score = 271 bits (693), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 125/185 (67%), Positives = 155/185 (83%) Query: 1 LNQVLLIIDAQQELMDGNQKESPVFHKDQLIQTINKVIEKAKQSGVETVFVRDLDVAGGK 60 ++Q LLIID QQEL++G+Q+ S VF+K QLI +N VIEKAK + +FVRD D+A G+ Sbjct: 1 MSQALLIIDVQQELIEGSQETSAVFNKSQLISNVNMVIEKAKLFEIPVIFVRDTDIAQGE 60 Query: 61 DAGFQVHNEILMPADAKVFDKKATNAFHGTGLLHYLKEQQVEHVVIMGCKTQHCIDTAVR 120 GFQ+H I +PAD+K+FDK ATN+FHGT LL YL+ Q++H+VIMGC T+HCID+AVR Sbjct: 61 GEGFQIHESINVPADSKIFDKTATNSFHGTELLSYLRSLQIKHLVIMGCATEHCIDSAVR 120 Query: 121 TATVSHFDVTLVGDGHSTTDSDVLSADQIIRHHNSTLHGHYNVEHFSLVRMSEEELFRPT 180 TAT+S FDVTLVGDGHSTTD++VLSA+QII+HHN TLHGHYNVEHFS+VR SEEELF PT Sbjct: 121 TATISGFDVTLVGDGHSTTDNEVLSAEQIIKHHNQTLHGHYNVEHFSIVRNSEEELFNPT 180 Query: 181 HDSYR 185 H+SYR Sbjct: 181 HNSYR 185 >Q8ETI2.1 Q8ETI2_OCEIH Hypothetical conserved protein Length = 202 Score = 258 bits (660), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 120/185 (64%), Positives = 150/185 (81%) Query: 1 LNQVLLIIDAQQELMDGNQKESPVFHKDQLIQTINKVIEKAKQSGVETVFVRDLDVAGGK 60 + Q+LLIID QQ+L+DGN E PVF K++LI TIN VIEKA+ + VFVRDLDVAGG Sbjct: 18 IKQLLLIIDVQQDLVDGNDTEQPVFLKEELISTINDVIEKARNENMPVVFVRDLDVAGGS 77 Query: 61 DAGFQVHNEILMPADAKVFDKKATNAFHGTGLLHYLKEQQVEHVVIMGCKTQHCIDTAVR 120 GF VH I +P +A+ F+K ATNAF+GTGLL Y+K ++ H++IMGC+TQHCID+AVR Sbjct: 78 GEGFDVHRNIHVPENARFFNKSATNAFYGTGLLEYVKGEKFNHLIIMGCETQHCIDSAVR 137 Query: 121 TATVSHFDVTLVGDGHSTTDSDVLSADQIIRHHNSTLHGHYNVEHFSLVRMSEEELFRPT 180 TAT++ DVTLVGDGHST ++VLS +QIIRHHN+TLHGHYNV+HFS+VR S E+LF PT Sbjct: 138 TATINGMDVTLVGDGHSTKGNEVLSGEQIIRHHNTTLHGHYNVDHFSVVRNSNEDLFVPT 197 Query: 181 HDSYR 185 HD+YR Sbjct: 198 HDNYR 202 >Q73AR1.1 Q73AR1_BACC1 Isochorismatase family protein Length = 186 Score = 256 bits (654), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 121/185 (65%), Positives = 148/185 (80%) Query: 1 LNQVLLIIDAQQELMDGNQKESPVFHKDQLIQTINKVIEKAKQSGVETVFVRDLDVAGGK 60 + Q LLIIDAQQELMDGN++ES VF K +L+ T+N ++KA S VFVRD+DVA G Sbjct: 1 MKQALLIIDAQQELMDGNEQESEVFRKTELLSTLNTAVQKAIDSNALIVFVRDIDVASGS 60 Query: 61 DAGFQVHNEILMPADAKVFDKKATNAFHGTGLLHYLKEQQVEHVVIMGCKTQHCIDTAVR 120 GF+VHN+I +P A + +K ATNAF+GT LL LKE+++ H+VI GCKT+HCIDTAVR Sbjct: 61 GVGFEVHNKIQVPQSAILINKAATNAFYGTSLLELLKEEKINHIVIGGCKTEHCIDTAVR 120 Query: 121 TATVSHFDVTLVGDGHSTTDSDVLSADQIIRHHNSTLHGHYNVEHFSLVRMSEEELFRPT 180 TATV FDVTL+ +GHSTTDSDVLSA+QII HHN TLHGHYNV+HFS+VR EE+LF+PT Sbjct: 121 TATVQGFDVTLIKNGHSTTDSDVLSAEQIIGHHNKTLHGHYNVDHFSMVRDIEEDLFQPT 180 Query: 181 HDSYR 185 HD YR Sbjct: 181 HDQYR 185 >A9VMJ1.1 A9VMJ1_BACWK Isochorismatase hydrolase Length = 186 Score = 254 bits (650), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 119/185 (64%), Positives = 149/185 (80%) Query: 1 LNQVLLIIDAQQELMDGNQKESPVFHKDQLIQTINKVIEKAKQSGVETVFVRDLDVAGGK 60 + Q LLIIDAQQELMDGN++E+ VF K +L+ T+N ++KA + TVFVRD+DVA G Sbjct: 1 MKQALLIIDAQQELMDGNEQENEVFRKTELLSTLNTAVQKAIDANALTVFVRDIDVASGS 60 Query: 61 DAGFQVHNEILMPADAKVFDKKATNAFHGTGLLHYLKEQQVEHVVIMGCKTQHCIDTAVR 120 GF+VHN+I +P A + +K ATN+F+GT LL LKE+++ H+VI GCKT+HCIDTAVR Sbjct: 61 GEGFEVHNQIKVPQSAILINKAATNSFYGTSLLELLKEEKINHIVIGGCKTEHCIDTAVR 120 Query: 121 TATVSHFDVTLVGDGHSTTDSDVLSADQIIRHHNSTLHGHYNVEHFSLVRMSEEELFRPT 180 TATV FDVTL+ +GHSTTDSDVLSA+QII HHN TLHGHYNV+HFS+VR EE+LF+PT Sbjct: 121 TATVQGFDVTLIKNGHSTTDSDVLSAEQIIGHHNKTLHGHYNVDHFSMVRDIEEDLFQPT 180 Query: 181 HDSYR 185 HD YR Sbjct: 181 HDQYR 185 >C2SHY8.1 C2SHY8_BACCE Isochorismatase Length = 186 Score = 254 bits (650), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 119/185 (64%), Positives = 149/185 (80%) Query: 1 LNQVLLIIDAQQELMDGNQKESPVFHKDQLIQTINKVIEKAKQSGVETVFVRDLDVAGGK 60 + Q LLIIDAQQELMDGN++E+ VF K +L+ T+N ++KA + TVFVRD+DVA G Sbjct: 1 MKQALLIIDAQQELMDGNEQENEVFRKTELLSTLNTAVQKAIDANALTVFVRDIDVASGS 60 Query: 61 DAGFQVHNEILMPADAKVFDKKATNAFHGTGLLHYLKEQQVEHVVIMGCKTQHCIDTAVR 120 GF+VHN+I +P A + +K ATN+F+GT LL LKE+++ H+VI GCKT+HCIDTAVR Sbjct: 61 GEGFEVHNQIKVPQSAILINKAATNSFYGTSLLELLKEEKINHIVIGGCKTEHCIDTAVR 120 Query: 121 TATVSHFDVTLVGDGHSTTDSDVLSADQIIRHHNSTLHGHYNVEHFSLVRMSEEELFRPT 180 TATV FDVTL+ +GHSTTDSDVLSA+QII HHN TLHGHYNV+HFS+VR EE+LF+PT Sbjct: 121 TATVQGFDVTLIKNGHSTTDSDVLSAEQIIGHHNKTLHGHYNVDHFSMVRDIEEDLFQPT 180 Query: 181 HDSYR 185 HD YR Sbjct: 181 HDQYR 185 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.133 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,062,439,846 Number of extensions: 40854419 Number of successful extensions: 108950 Number of sequences better than 1.0e-05: 522 Number of HSP's gapped: 108958 Number of HSP's successfully gapped: 522 Length of query: 185 Length of database: 3,060,696,203 Length adjustment: 127 Effective length of query: 58 Effective length of database: 1,864,227,298 Effective search space: 108125183284 Effective search space used: 108125183284 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)