BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0510.0010.p
         (134 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1DIC4.1 B1DIC4_9BACL GtrA family protein                              99   2e-19
A7Z5B7.1 A7Z5B7_BACA2 YngA                                             85   3e-15
Q70JY6.1 Q70JY6_BACAM YngA protein                                     85   3e-15
Q5KYA0.1 Q5KYA0_GEOKA Hypothetical conserved protein                   83   1e-14
O31821.1 YNGA_BACSU Uncharacterized membrane protein yngA              81   4e-14

>B1DIC4.1 B1DIC4_9BACL GtrA family protein
          Length = 148

 Score = 98.6 bits (244), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/136 (41%), Positives = 81/136 (59%), Gaps = 2/136 (1%)

Query: 1   MSDRQLNAGFI-QFLKFNAVGVLNTLIDFAIFTLLHSLGMMNAPAQIISYSAGTANSFIW 59
           +S R+   G + QF+ FN VG+LNTL+DF ++ +L   G+   PAQ+ISYSAG  NS++ 
Sbjct: 10  ISPRKQKLGALKQFVVFNMVGLLNTLVDFVVYGILVWAGLYVLPAQVISYSAGMVNSYVL 69

Query: 60  NKKVTFRD-RDRGSKDSFDRMQLVRFIVLNLVVLGISVLLMHLLTGRFGIQXXXXXXXXX 118
           N  +TF+    R  +   DR + VRFI+LN  VLG+S+LL++ LT   G+          
Sbjct: 70  NSLITFKGASKREGEYKADRGRAVRFILLNAAVLGVSMLLLYELTEAAGLGPLTAKLLAT 129

Query: 119 XXXXXINFFGSRKWVF 134
                +NF GS+ WVF
Sbjct: 130 GVTVVLNFAGSKWWVF 145


>A7Z5B7.1 A7Z5B7_BACA2 YngA
          Length = 135

 Score = 84.7 bits (208), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 68/120 (56%), Gaps = 6/120 (5%)

Query: 15  KFNAVGVLNTLIDFAIFTLLHSLGMMNAPAQIISYSAGTANSFIWNKKVTFRDRDRGSKD 74
           +F  VGV NTLIDF +F LL +  +   PAQI SYSAG  NS++WN+K TFR + +    
Sbjct: 11  RFCTVGVGNTLIDFGVFFLLAACHVPYLPAQICSYSAGIINSYVWNRKWTFRVKRKA--- 67

Query: 75  SFDRMQLVRFIVLNLVVLGISVLLMHLLTGRFGIQXXXXXXXXXXXXXXINFFGSRKWVF 134
             D  +++RF+++NL   GI+ LL++    + G                +NF G+R WVF
Sbjct: 68  --DGKEIMRFVMINLAASGITFLLLYAFQ-KGGCSLLVSKFAATIGGMMMNFIGNRIWVF 124


>Q70JY6.1 Q70JY6_BACAM YngA protein
          Length = 135

 Score = 84.7 bits (208), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 68/120 (56%), Gaps = 6/120 (5%)

Query: 15  KFNAVGVLNTLIDFAIFTLLHSLGMMNAPAQIISYSAGTANSFIWNKKVTFRDRDRGSKD 74
           +F  VGV NTLIDF +F LL +  +   PAQI SYSAG  NS++WN+K TFR + +    
Sbjct: 11  RFCTVGVGNTLIDFGVFFLLAACHVPYLPAQICSYSAGIINSYVWNRKWTFRVKRKA--- 67

Query: 75  SFDRMQLVRFIVLNLVVLGISVLLMHLLTGRFGIQXXXXXXXXXXXXXXINFFGSRKWVF 134
             D  +++RF+++NL   GI+ LL++    + G                +NF G+R WVF
Sbjct: 68  --DGKEIMRFVMINLAASGITFLLLYAFQ-KGGCSLLVSKFAATIGGMMMNFIGNRIWVF 124


>Q5KYA0.1 Q5KYA0_GEOKA Hypothetical conserved protein
          Length = 136

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 72/120 (60%), Gaps = 7/120 (5%)

Query: 15  KFNAVGVLNTLIDFAIFTLLHSLGMMNAPAQIISYSAGTANSFIWNKKVTFRDRDRGSKD 74
           +F  VGV NT++DFA+F LL + G+  A AQ++SY AG ANS++WN++ TF+ + R +  
Sbjct: 17  RFAVVGVGNTMVDFAVFFLLTAAGVPTAIAQVVSYGAGVANSYVWNRRWTFQMKQRANIG 76

Query: 75  SFDRMQLVRFIVLNLVVLGISVLLMHLLTGRFGIQXXXXXXXXXXXXXXINFFGSRKWVF 134
                +L+RF+ +N + LG+S++++ L   R G                +NF GSR WVF
Sbjct: 77  -----ELLRFLAVNGLSLGVSLVVL-LAAERLG-PLWLAKGAATIMGMAVNFIGSRCWVF 129


>O31821.1 YNGA_BACSU Uncharacterized membrane protein yngA
          Length = 148

 Score = 80.9 bits (198), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 66/120 (55%), Gaps = 6/120 (5%)

Query: 15  KFNAVGVLNTLIDFAIFTLLHSLGMMNAPAQIISYSAGTANSFIWNKKVTFRDRDRGSKD 74
           +F  VGV NTLIDF +F LL +  +   PAQI SY+AG  NS++WN+  TF  + +    
Sbjct: 24  RFCTVGVGNTLIDFGVFFLLTACHVSYLPAQICSYTAGIVNSYVWNRNWTFCVKRKA--- 80

Query: 75  SFDRMQLVRFIVLNLVVLGISVLLMHLLTGRFGIQXXXXXXXXXXXXXXINFFGSRKWVF 134
             D  ++VRF+++N+   GI+ LL++L     G                +NF G+R WVF
Sbjct: 81  --DGKEIVRFLMINIAASGITFLLLYLFQ-NCGCSLLVSKLAATIGGMMMNFIGNRIWVF 137


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.332    0.144    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 647,402,954
Number of extensions: 21370815
Number of successful extensions: 69057
Number of sequences better than 1.0e-05: 68
Number of HSP's gapped: 69024
Number of HSP's successfully gapped: 68
Length of query: 134
Length of database: 3,060,696,203
Length adjustment: 98
Effective length of query: 36
Effective length of database: 2,137,436,733
Effective search space: 76947722388
Effective search space used: 76947722388
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 126 (53.1 bits)