BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0510.0009.p (329 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DIC5.1 B1DIC5_9BACL Glycosyl transferase family 2 496 e-138 O34319.2 YKCC_BACSU Uncharacterized glycosyltransferase ykcC EC=... 439 e-121 A7Z3R1.1 A7Z3R1_BACA2 YkcC EC=2.-.-.- 431 e-119 C1TC84.1 C1TC84_9FIRM Glycosyl transferase 428 e-118 A8FHU5.1 A8FHU5_BACP2 Glycosyltransferase 423 e-117 >B1DIC5.1 B1DIC5_9BACL Glycosyl transferase family 2 Length = 327 Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust. Identities = 233/309 (75%), Positives = 270/309 (87%) Query: 1 VKARYSVIVPMFNEEEVIQHTYERLKKVMDGCGDSYELVFVNDGSRDRTAEIMREVSSRD 60 +KARYS+IVPM+NEEEVI+HTY +LK+VMDG G+ YELVFVNDGS+DRT EI+ V +D Sbjct: 1 MKARYSIIVPMYNEEEVIRHTYAKLKEVMDGYGEPYELVFVNDGSKDRTVEIVEGVCQQD 60 Query: 61 EHVKLVDFSRNFGHQVAITAGMDYAEGEAVVVIDADLQDPPEVILQMIAKWKEGYEVVYA 120 +V+LV+FSRNFGHQ+AITAGMDYA+G+A+++IDADLQDPPEV+L+MIAKWKEGYEVVY Sbjct: 61 SNVRLVNFSRNFGHQIAITAGMDYAQGDAIIIIDADLQDPPEVMLEMIAKWKEGYEVVYG 120 Query: 121 KRLKRQGETLFKKATAKMFYRLLSSMTSVEIPTDTGDFRLIDRKVCDVLRGLKEKNRYVR 180 KRLKR+GET FKK TA MFYR + S+T+ +IP DTGDFRLIDRKVCDVLRGLKEKNR+VR Sbjct: 121 KRLKRKGETFFKKITAMMFYRTMRSLTNFDIPMDTGDFRLIDRKVCDVLRGLKEKNRFVR 180 Query: 181 GLVSWVGFRQTMVEYVREERFAGETKYPLKKMIRFALDGITSFSHKPLKIASYIGXXXXX 240 GLVSWVGFRQTMVEYVREERFAGETKYPLKKMI FA+DGITSFS+KPLKIASYIG Sbjct: 181 GLVSWVGFRQTMVEYVREERFAGETKYPLKKMINFAVDGITSFSYKPLKIASYIGFTLSA 240 Query: 241 XXXXXXXXXXXQKVFTSWTVPGWASIVGVNLLFNGIVLMLLGVIGEYIGRIYDESKDRPL 300 Q++FTS TV GW +IV +NLLFNGI+LMLLG+IGEYIGRIYDESK+RPL Sbjct: 241 TSFVYLLVVLCQRLFTSSTVAGWTTIVAINLLFNGIILMLLGLIGEYIGRIYDESKNRPL 300 Query: 301 YIVRETRGY 309 YIVRE RG+ Sbjct: 301 YIVREARGF 309 >O34319.2 YKCC_BACSU Uncharacterized glycosyltransferase ykcC EC=2.4.-.- Length = 323 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 205/305 (67%), Positives = 253/305 (82%) Query: 4 RYSVIVPMFNEEEVIQHTYERLKKVMDGCGDSYELVFVNDGSRDRTAEIMREVSSRDEHV 63 +YS++VP++NEE VI TY+RLK+VMD ++YEL+FVNDGS+DR+ EI+RE S D V Sbjct: 6 QYSIVVPVYNEELVIHETYQRLKEVMDQTKENYELLFVNDGSKDRSIEILREHSLIDPRV 65 Query: 64 KLVDFSRNFGHQVAITAGMDYAEGEAVVVIDADLQDPPEVILQMIAKWKEGYEVVYAKRL 123 K++DFSRNFGHQ+AITAGMDYA+G A+VVIDADLQDPPE+IL+MI KWKEGYEVVYA R Sbjct: 66 KIIDFSRNFGHQIAITAGMDYAQGNAIVVIDADLQDPPELILEMIEKWKEGYEVVYAVRT 125 Query: 124 KRQGETLFKKATAKMFYRLLSSMTSVEIPTDTGDFRLIDRKVCDVLRGLKEKNRYVRGLV 183 KR+GET FKK TA MFYRLLS MT ++IP DTGDFRL+DRKVCD ++ LKEKN +VRGLV Sbjct: 126 KRKGETFFKKQTAAMFYRLLSGMTDIDIPIDTGDFRLMDRKVCDEMKRLKEKNPFVRGLV 185 Query: 184 SWVGFRQTMVEYVREERFAGETKYPLKKMIRFALDGITSFSHKPLKIASYIGXXXXXXXX 243 SWVGF+QT VEYVR+ER AGETKYPLKKM++ ++DGIT+FSHKPLK+ASY G Sbjct: 186 SWVGFKQTAVEYVRDERLAGETKYPLKKMLKLSMDGITTFSHKPLKLASYAGILMSGTGF 245 Query: 244 XXXXXXXXQKVFTSWTVPGWASIVGVNLLFNGIVLMLLGVIGEYIGRIYDESKDRPLYIV 303 K+FT T+ GW+S++ + LLF+GIVL++LGVIGEYIGRIYDE+KDRPLYIV Sbjct: 246 LYMFIVLYLKLFTDSTITGWSSLIVIQLLFSGIVLLILGVIGEYIGRIYDEAKDRPLYIV 305 Query: 304 RETRG 308 +++ G Sbjct: 306 QKSYG 310 >A7Z3R1.1 A7Z3R1_BACA2 YkcC EC=2.-.-.- Length = 323 Score = 431 bits (1109), Expect = e-119, Method: Compositional matrix adjust. Identities = 201/305 (65%), Positives = 249/305 (81%) Query: 4 RYSVIVPMFNEEEVIQHTYERLKKVMDGCGDSYELVFVNDGSRDRTAEIMREVSSRDEHV 63 +YS++VP++NEE VIQ TY+RLK+VMD + YEL+FVNDGS+DR+ EI+RE S D V Sbjct: 6 QYSIVVPVYNEELVIQTTYQRLKEVMDQTKEHYELIFVNDGSKDRSIEILREHSLIDPRV 65 Query: 64 KLVDFSRNFGHQVAITAGMDYAEGEAVVVIDADLQDPPEVILQMIAKWKEGYEVVYAKRL 123 K++DFSRNFGHQ+AITAGMDYAEG A+ VIDADLQDPPE+IL MI +WKEGY+VVYA R Sbjct: 66 KIIDFSRNFGHQIAITAGMDYAEGNAIAVIDADLQDPPELILDMIEQWKEGYDVVYAVRT 125 Query: 124 KRQGETLFKKATAKMFYRLLSSMTSVEIPTDTGDFRLIDRKVCDVLRGLKEKNRYVRGLV 183 KR+GET FKK TA MFYRLL S+T ++IP DTGDFRL+DRKVCD ++ LKEKN +VRGLV Sbjct: 126 KRKGETFFKKQTASMFYRLLRSVTDIDIPLDTGDFRLLDRKVCDEMKRLKEKNPFVRGLV 185 Query: 184 SWVGFRQTMVEYVREERFAGETKYPLKKMIRFALDGITSFSHKPLKIASYIGXXXXXXXX 243 SWVGF+QT VEY R+ER AGETKYPLKKM++ ++DGIT+FSHKPLK ASY G Sbjct: 186 SWVGFKQTAVEYERDERLAGETKYPLKKMLKLSMDGITTFSHKPLKAASYAGMIMSGAGF 245 Query: 244 XXXXXXXXQKVFTSWTVPGWASIVGVNLLFNGIVLMLLGVIGEYIGRIYDESKDRPLYIV 303 K+FT+ T+ GW+S++ + LLF+GIVL++LG+IGEYIGRIYDE+KDRPLYIV Sbjct: 246 LYMFIVLYMKLFTNSTITGWSSLIVIQLLFSGIVLLMLGMIGEYIGRIYDEAKDRPLYIV 305 Query: 304 RETRG 308 ++ G Sbjct: 306 QKAYG 310 >C1TC84.1 C1TC84_9FIRM Glycosyl transferase Length = 320 Score = 428 bits (1100), Expect = e-118, Method: Compositional matrix adjust. Identities = 200/313 (63%), Positives = 249/313 (79%) Query: 5 YSVIVPMFNEEEVIQHTYERLKKVMDGCGDSYELVFVNDGSRDRTAEIMREVSSRDEHVK 64 YS++VP+FNEE VI TYERLKKVMD G+SYEL+FVNDGS D+TAEI+ + +D+HVK Sbjct: 7 YSIVVPVFNEEAVIAVTYERLKKVMDTTGESYELLFVNDGSSDQTAEIIDRICRQDDHVK 66 Query: 65 LVDFSRNFGHQVAITAGMDYAEGEAVVVIDADLQDPPEVILQMIAKWKEGYEVVYAKRLK 124 L++FSRNFGHQ+AI+AGMD A G+AVVVIDADLQDPPEVI QMI +WK+GYEVVYA R + Sbjct: 67 LINFSRNFGHQIAISAGMDNALGQAVVVIDADLQDPPEVIWQMIERWKKGYEVVYATRKE 126 Query: 125 RQGETLFKKATAKMFYRLLSSMTSVEIPTDTGDFRLIDRKVCDVLRGLKEKNRYVRGLVS 184 R+GETLFKK TA FYRLL +T ++IP DTGDFRLIDRKVC+V++ LKEKNR+VRGLVS Sbjct: 127 RKGETLFKKWTAAAFYRLLKFITDIDIPVDTGDFRLIDRKVCNVMKNLKEKNRFVRGLVS 186 Query: 185 WVGFRQTMVEYVREERFAGETKYPLKKMIRFALDGITSFSHKPLKIASYIGXXXXXXXXX 244 WVGFRQT VEYVREERFAGE+KYPL+KMI+ +LD IT+FS+KPLK+A +G Sbjct: 187 WVGFRQTAVEYVREERFAGESKYPLRKMIKLSLDAITTFSYKPLKLAVCLGFVFSSLSLV 246 Query: 245 XXXXXXXQKVFTSWTVPGWASIVGVNLLFNGIVLMLLGVIGEYIGRIYDESKDRPLYIVR 304 +++ ++T+P WA ++ + + NGI+L +LG+IGEYIGRIYDESK RPLYI+ Sbjct: 247 YLFFALLERLIGTYTLPAWALLIAMGIFLNGIILSVLGIIGEYIGRIYDESKGRPLYIIA 306 Query: 305 ETRGYGDAESGGE 317 G+G E E Sbjct: 307 NKAGFGREEESHE 319 >A8FHU5.1 A8FHU5_BACP2 Glycosyltransferase Length = 330 Score = 423 bits (1088), Expect = e-117, Method: Compositional matrix adjust. Identities = 196/305 (64%), Positives = 248/305 (81%) Query: 4 RYSVIVPMFNEEEVIQHTYERLKKVMDGCGDSYELVFVNDGSRDRTAEIMREVSSRDEHV 63 +YS++VP++NEE VI +Y+RLK VMD G++YEL+FVNDGS DRTAE+++ D +V Sbjct: 6 QYSIVVPVYNEELVIHESYQRLKTVMDSTGEAYELLFVNDGSMDRTAELIKGYCQTDSNV 65 Query: 64 KLVDFSRNFGHQVAITAGMDYAEGEAVVVIDADLQDPPEVILQMIAKWKEGYEVVYAKRL 123 +L+DFSRNFGHQ+AITAGMDYA+GEAVVVIDADLQDPPE+IL MI KWKEGYEVVYA R Sbjct: 66 RLIDFSRNFGHQIAITAGMDYAKGEAVVVIDADLQDPPELILDMIEKWKEGYEVVYAVRS 125 Query: 124 KRQGETLFKKATAKMFYRLLSSMTSVEIPTDTGDFRLIDRKVCDVLRGLKEKNRYVRGLV 183 KR+GET+FKK TA +FYR+L +T V+IP DTGDFRL+DRKVC +R ++EKN +VRGLV Sbjct: 126 KRKGETVFKKYTASLFYRVLRQITEVDIPIDTGDFRLMDRKVCHEMRKIREKNPFVRGLV 185 Query: 184 SWVGFRQTMVEYVREERFAGETKYPLKKMIRFALDGITSFSHKPLKIASYIGXXXXXXXX 243 SWVGF+Q VEYVR+ER AGETKYPLKKM++ ++DGITSFS+KPLK+AS G Sbjct: 186 SWVGFKQVAVEYVRDERLAGETKYPLKKMLKLSMDGITSFSYKPLKLASVTGIALSAIGF 245 Query: 244 XXXXXXXXQKVFTSWTVPGWASIVGVNLLFNGIVLMLLGVIGEYIGRIYDESKDRPLYIV 303 K+FT+ T+ GW+S++ + L F+GI+L +LG+IGEYIGRIYDE+KDRPLYIV Sbjct: 246 ISMFLVLYLKLFTNSTITGWSSLIVIQLFFSGIILFMLGMIGEYIGRIYDEAKDRPLYIV 305 Query: 304 RETRG 308 R++ G Sbjct: 306 RDSYG 310 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.139 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,883,609,220 Number of extensions: 75123114 Number of successful extensions: 196894 Number of sequences better than 1.0e-05: 2513 Number of HSP's gapped: 195582 Number of HSP's successfully gapped: 2516 Length of query: 329 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 193 Effective length of database: 1,779,438,163 Effective search space: 343431565459 Effective search space used: 343431565459 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)