BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0510.0004.p (192 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B5G875.1 B5G875_9ACTO AclQ 72 2e-11 C4DFH7.1 C4DFH7_9ACTO Predicted nucleoside-diphosphate sugar epi... 72 2e-11 C1WMX7.1 C1WMX7_9ACTO Predicted nucleoside-diphosphate sugar epi... 71 4e-11 B4UY09.1 B4UY09_9ACTO Putative uncharacterized protein 69 2e-10 C4EB22.1 C4EB22_STRRS Predicted nucleoside-diphosphate sugar epi... 69 3e-10 >B5G875.1 B5G875_9ACTO AclQ Length = 269 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 47/146 (32%), Positives = 80/146 (54%), Gaps = 5/146 (3%) Query: 29 DDAREILQAAKTNGVQNIVFLSSASINRSDSDHNDNAKKHKEVEDQIKAFGFNYAFIRAE 88 + ARE+ + A+ GV+ IV LSS+S+ +S N + + H+ VE ++ G F+R + Sbjct: 62 ETAREVAELAREAGVRQIVVLSSSSVLEDES--NPSHRHHRAVERAVEDSGVGRTFVRPD 119 Query: 89 AFMHNAIY-WRDLFRYNKGTIKLPALDAKLASVHETDIAEVISIVLTGFNKFSGQVLTLT 147 F N ++ W + R +G + P A A VHE DIA V++ L + G+ +T Sbjct: 120 EFAGNTLWKWGESIR-ERGVVSAPYGQAARAVVHEADIAAVVAAALL-EDGHEGESYLVT 177 Query: 148 GANILSQLNILSEISKQLGQQIGFEE 173 G L+Q+ ++ +S+ G++I FEE Sbjct: 178 GPRALTQVEQVAALSRATGREIRFEE 203 >C4DFH7.1 C4DFH7_9ACTO Predicted nucleoside-diphosphate sugar epimerase Length = 268 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 70/137 (51%), Gaps = 2/137 (1%) Query: 37 AAKTNGVQNIVFLSSASINRSDSDHNDNAKKHKEVEDQIKAFGFNYAFIRAEAFMHNAIY 96 AAK GV +V LSSA D+ N + H E ++ GF + F+R F N ++ Sbjct: 81 AAKEAGVSKVVLLSSAGAAMPDAMDNFIGRMHLLAEQGLENAGFTWVFVRPAMFATNTLF 140 Query: 97 WRDLFRYNKGTIKLPALDAKLASVHETDIAEVISIVLTGFNKFSGQVLTLTGANILSQLN 156 W D + + +++P D+ + +H+ DIA+V + LT +K G + + G L+Q Sbjct: 141 WADSVK-KESLVRVPYPDSLVRPIHDWDIADVALLGLTS-DKLDGHKVLIDGPEALTQRR 198 Query: 157 ILSEISKQLGQQIGFEE 173 + I + LG++I EE Sbjct: 199 QVELIGEALGREIAVEE 215 >C1WMX7.1 C1WMX7_9ACTO Predicted nucleoside-diphosphate sugar epimerase Length = 277 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 73/137 (53%), Gaps = 3/137 (2%) Query: 33 EILQAAKTNGVQNIVFLSSASINRSDSDHNDNAKKHKEVEDQIKAFGFNYAFIRAEAFMH 92 E+L AK GV IV LSS+S+ +D+D N A H E+ ++A G ++ F+R FM Sbjct: 75 ELLAGAKAAGVGRIVLLSSSSVVGTDTD-NAIAAYHLATENAVRASGLDWTFLRPNTFMS 133 Query: 93 NAIYWRDLFRYNKGTIKLPALDAKLASVHETDIAEVISIVLTGFNKFSGQVLTLTGANIL 152 N + WRD R +++ + ++++H DIA+V LT + +G LTG + Sbjct: 134 NTLRWRDQLRAGD-EVRVQYPEVAVSTIHPGDIADVAVRALT-EDGHAGTAYRLTGPVAV 191 Query: 153 SQLNILSEISKQLGQQI 169 ++ +++ LG+ + Sbjct: 192 RPAEQVAILAEALGRPL 208 >B4UY09.1 B4UY09_9ACTO Putative uncharacterized protein Length = 277 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 70/141 (49%), Gaps = 4/141 (2%) Query: 33 EILQAAKTNGVQNIVFLSSASINRSDSDHNDNAKKHKEVEDQIKAFGFNYAFIRAEAFMH 92 ++LQAA+ GV+++V +SS ++ H A ++ VE +KA G + +R Sbjct: 77 DVLQAARQAGVEHVVLVSSITVQ--THPHLGPAGENLAVERLLKASGMAWTILRPTQLAS 134 Query: 93 NAIYWRDLFRYNKGTIKLPALDAKLASVHETDIAEVISIVLTGFNKFSGQVLTLTGANIL 152 N + W R + T++ P + L ++H DIA V + LTG G+ LTG + Sbjct: 135 NTLMWAASIREYE-TVRAPYAETALPTIHPADIASVARVALTGPG-HQGRTYALTGPEPV 192 Query: 153 SQLNILSEISKQLGQQIGFEE 173 + + I+ LG+++ F E Sbjct: 193 TARQQVEAIAAALGREVPFAE 213 >C4EB22.1 C4EB22_STRRS Predicted nucleoside-diphosphate sugar epimerase Length = 279 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 43/139 (30%), Positives = 69/139 (49%), Gaps = 2/139 (1%) Query: 35 LQAAKTNGVQNIVFLSSASINRSDSDHNDNAKKHKEVEDQIKAFGFNYAFIRAEAFMHNA 94 ++ A GV +IV LS++++ +D + A+ H EVE + A F+R +F NA Sbjct: 79 VEQAAAAGVGHIVLLSTSAVLNPAADDDLIARSHLEVERALAASPIESTFLRPGSFASNA 138 Query: 95 IYWRDLFRYNKGTIKLPALDAKLASVHETDIAEVISIVLTGFNKFSGQVLTLTGANILSQ 154 + W R + G + LP D+ +HE DIAE VLT + SG TLTG ++ Sbjct: 139 LQWSWAIR-STGAVNLPYPDSHTDPIHEADIAEAALAVLTD-PRLSGGRYTLTGPESVTF 196 Query: 155 LNILSEISKQLGQQIGFEE 173 + I++ G+ + E Sbjct: 197 REQIGHIARATGRSVTVNE 215 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.133 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 888,391,697 Number of extensions: 33787177 Number of successful extensions: 81991 Number of sequences better than 1.0e-05: 60 Number of HSP's gapped: 82166 Number of HSP's successfully gapped: 60 Length of query: 192 Length of database: 3,060,696,203 Length adjustment: 128 Effective length of query: 64 Effective length of database: 1,854,806,283 Effective search space: 118707602112 Effective search space used: 118707602112 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)