BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0510.0003.p (186 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q5WKG3.1 Q5WKG3_BACSK Putative uncharacterized protein 122 2e-26 A6TUZ0.1 A6TUZ0_ALKMQ Transcriptional regulator, PadR-like family 120 7e-26 A6LZD5.1 A6LZD5_CLOB8 Transcriptional regulator, PadR-like family 119 9e-26 Q187J9.1 Q187J9_CLOD6 PadR-family transcriptional regulator 116 1e-24 Q97LM7.1 Q97LM7_CLOAB Putative uncharacterized protein 106 1e-21 >Q5WKG3.1 Q5WKG3_BACSK Putative uncharacterized protein Length = 182 Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 70/175 (40%), Positives = 113/175 (64%), Gaps = 6/175 (3%) Query: 13 IIPXXXXLILGLLKDCGQSSAYELLNIFKERNYRYLVHVTKGSLYYNLQKLANEGFV-RL 71 +IP LILGLLK+ S YELL I ER+Y+++V+ TKGS YYN+Q+L + + R+ Sbjct: 1 MIPL---LILGLLKEKPGSYGYELLAIMNERHYKFVVNYTKGSFYYNIQQLEEKRMIQRI 57 Query: 72 VEVVSVNNYPEQHIYEITEQGNDYFDALMAKHSVQTDDITLAFYMTTLFAHQYDPEQFKK 131 VE + E++ Y +T+ G + F+ LM + +TD I L+FY LF YD E+ K+ Sbjct: 58 VEEREAES-REKNKYILTDLGVEEFNRLMTTYGSKTDYINLSFYSAMLFEGAYDKEKMKE 116 Query: 132 AVSVQIEKTQKKIEEIDFVLNSKKDIIYDTAKSMMKNVRAHHELNLKWFHELLEQ 186 V VQI++T+KKI ++ L ++ D++ + M++N +HH++N+ WFHE+L++ Sbjct: 117 LVLVQIKQTEKKIALLEDTLKNRTDLM-KNFRRMLENSLSHHKVNVDWFHEILKE 170 >A6TUZ0.1 A6TUZ0_ALKMQ Transcriptional regulator, PadR-like family Length = 189 Score = 120 bits (300), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 69/176 (39%), Positives = 110/176 (62%), Gaps = 12/176 (6%) Query: 13 IIPXXXXLILGLLKDCGQSSAYELLNIFKERNYRYLVHVTKGSLYYNLQKLANEGFVRLV 72 +IP LILGLLK S Y+LL + +ER+Y+Y+V+ TKGS YYNLQ+L + +++ V Sbjct: 1 MIPL---LILGLLKQNPGSYGYKLLALMEERHYKYIVNFTKGSFYYNLQQLEEKQYIKKV 57 Query: 73 EVVSVNNYPEQHIYEITEQGNDYFDALMAKHSVQTDDITLAFYMTTLFAHQYDPEQFKKA 132 + ++N E Y +TE G+ F+ LM K+ +T+ + L+FY LFA++Y E+ KK Sbjct: 58 D--QLDNTRETRNYILTELGDKEFEKLMYKYGSKTEYVNLSFYAAMLFANEYKSEELKKL 115 Query: 133 VSVQIEKTQKKIEEIDFVLNSK---KDIIYDTAKSMMKNVRAHHELNLKWFHELLE 185 + +QI++T +KI F+L + I K M++N R+HH +N++WF LL+ Sbjct: 116 IEIQIQQTNQKI----FLLEQSLEYNETIPANFKKMLENSRSHHLVNVEWFEGLLK 167 >A6LZD5.1 A6LZD5_CLOB8 Transcriptional regulator, PadR-like family Length = 173 Score = 119 bits (299), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 70/167 (41%), Positives = 104/167 (62%), Gaps = 5/167 (2%) Query: 20 LILGLLKDCGQSSAYELLNIFKERNYRYLVHVTKGSLYYNLQKLANEGFVRLVEVVSVNN 79 LILGLLK S YELL + +ER+Y+Y+ + TKGS YYNLQ+L + +++ +V +N Sbjct: 5 LILGLLKQNPGSYGYELLALMEERHYKYIANFTKGSFYYNLQQLEEKKYIK--KVNKSDN 62 Query: 80 YPEQHIYEITEQGNDYFDALMAKHSVQTDDITLAFYMTTLFAHQYDPEQFKKAVSVQIEK 139 E + Y ITE G+ F LM K+ +TD I L+FY LFA +Y E K + +QIE+ Sbjct: 63 TRETNNYIITELGDKEFQKLMYKYGSKTDYINLSFYAAMLFADEYKSEDLTKLIEIQIEQ 122 Query: 140 TQKKIEEIDFVLNSKKDIIYDTA-KSMMKNVRAHHELNLKWFHELLE 185 T+KKI ++ L + D+ T + M++N +HH +N+KWF LL+ Sbjct: 123 TKKKISLLEQSL--EHDVTIPTYFRKMLENSHSHHLVNVKWFEGLLK 167 >Q187J9.1 Q187J9_CLOD6 PadR-family transcriptional regulator Length = 173 Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/173 (40%), Positives = 106/173 (61%), Gaps = 6/173 (3%) Query: 13 IIPXXXXLILGLLKDCGQSSAYELLNIFKERNYRYLVHVTKGSLYYNLQKLANEGFVRLV 72 +IP LILGLLK S YELL + ++++Y+Y+V+ TKGS YYNLQ+L + F+ V Sbjct: 1 MIPL---LILGLLKQNPNSYGYELLALMEKKHYKYIVNFTKGSFYYNLQQLEEKKFIEKV 57 Query: 73 EVVSVNNYPEQHIYEITEQGNDYFDALMAKHSVQTDDITLAFYMTTLFAHQYDPEQFKKA 132 E N E H Y ITE G F+ LM K+ +T+ I L+FY T LFA+ Y E+ + Sbjct: 58 ENKQSNKNRETHNYIITELGCQEFEKLMYKYGSKTEYINLSFYATLLFANDYKNEKLIEL 117 Query: 133 VSVQIEKTQKKIEEID-FVLNSKKDIIYDTAKSMMKNVRAHHELNLKWFHELL 184 + QI++TQ +I ++ + N K + Y M++N R+HH +N++WF +L+ Sbjct: 118 LETQIKQTQVRISLLNESIENDKTNSHY--FNRMLENSRSHHLVNIEWFEKLI 168 >Q97LM7.1 Q97LM7_CLOAB Putative uncharacterized protein Length = 149 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 60/143 (41%), Positives = 94/143 (65%), Gaps = 3/143 (2%) Query: 42 ERNYRYLVHVTKGSLYYNLQKLANEGFVRLVEVVSVNNYPEQHIYEITEQGNDYFDALMA 101 ER+Y+Y+V+ TKGS YYNLQ+L + +++ +V +++ E+ Y ITE G+ F+ LM Sbjct: 3 ERHYKYIVNFTKGSFYYNLQQLEEKQYIK--KVNQLDSTREKRNYIITELGDKEFEKLMY 60 Query: 102 KHSVQTDDITLAFYMTTLFAHQYDPEQFKKAVSVQIEKTQKKIEEIDFVLNSKKDIIYDT 161 K+ +TD I L+FY LFA++Y ++ K + QIE+T+KKI ++ LN+ K I Sbjct: 61 KYGSKTDYINLSFYAAMLFANEYKSKELTKLIEKQIEQTKKKIFLLEQSLNNNKAIP-TY 119 Query: 162 AKSMMKNVRAHHELNLKWFHELL 184 K M++N R+HH +NL+WF LL Sbjct: 120 FKKMLENSRSHHLVNLQWFEGLL 142 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.135 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 998,384,586 Number of extensions: 37398042 Number of successful extensions: 118776 Number of sequences better than 1.0e-05: 99 Number of HSP's gapped: 118865 Number of HSP's successfully gapped: 99 Length of query: 186 Length of database: 3,060,696,203 Length adjustment: 128 Effective length of query: 58 Effective length of database: 1,854,806,283 Effective search space: 107578764414 Effective search space used: 107578764414 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)