BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0509.0015.p
         (120 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KGM2.1 B3KGM2_9BACI Tetratricopeptide domain protein                145   1e-33
B1D779.1 B1D779_9BACL TPR repeat-containing protein                   116   5e-25

>B3KGM2.1 B3KGM2_9BACI Tetratricopeptide domain protein
          Length = 223

 Score =  145 bits (365), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 67/115 (58%), Positives = 89/115 (77%)

Query: 2   ELGYANLKLGHLPEGEAQMLQGLEINRKAQYGQPYLRLAEVFRNIDHNKALQYVTQFQEI 61
           ++G A L  G + +GEA +++ L+IN + +YG+PYLRLAE FR+ D  KAL Y+ QF  I
Sbjct: 105 DIGSARLHTGSIAQGEADIVRALQINPRVKYGRPYLRLAEAFRDSDREKALHYLEQFHAI 164

Query: 62  QSSSSEAYYLAGSMYKALGRKEDAKRAFNESTAVYRSLPKYKKRQERGWALRSYF 116
            SSSSEA+YL G MY++LGR +DAK+++ ES  VYRSLPKYKKRQER WA+RS+F
Sbjct: 165 HSSSSEAFYLLGYMYQSLGRAQDAKKSYQESMDVYRSLPKYKKRQERKWAVRSWF 219


>B1D779.1 B1D779_9BACL TPR repeat-containing protein
          Length = 225

 Score =  116 bits (291), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 57/119 (47%), Positives = 75/119 (63%)

Query: 2   ELGYANLKLGHLPEGEAQMLQGLEINRKAQYGQPYLRLAEVFRNIDHNKALQYVTQFQEI 61
           +LG   ++ G    GEA M + L +N + +YG PYLRLA  +  +D  +AL Y+  FQEI
Sbjct: 106 DLGLCQMQTGQPEAGEAAMSKALLLNPRVKYGAPYLRLASYYSKLDAERALSYIEAFQEI 165

Query: 62  QSSSSEAYYLAGSMYKALGRKEDAKRAFNESTAVYRSLPKYKKRQERGWALRSYFAKMR 120
            SSS EAYY    +Y+ + RKEDA  A +E   +YRSLP+YKKR ER WALR +  K R
Sbjct: 166 HSSSCEAYYRLADIYEQMSRKEDAMEAVSEGLRIYRSLPRYKKRVERKWALRLFIRKTR 224


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.131    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 623,648,875
Number of extensions: 19714714
Number of successful extensions: 66682
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 66691
Number of HSP's successfully gapped: 2
Length of query: 120
Length of database: 3,060,696,203
Length adjustment: 86
Effective length of query: 34
Effective length of database: 2,250,488,913
Effective search space: 76516623042
Effective search space used: 76516623042
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)