BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0509.0012.p
         (134 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KJT2.1 B3KJT2_9BACI Regulatory protein MarR                         181   2e-44
Q2B6Y0.1 Q2B6Y0_9BACI Transcriptional regulator (MarR family) pr...   119   7e-26
C5D5R5.1 C5D5R5_9BACI Transcriptional regulator, MarR family          115   9e-25
B1DKV1.1 B1DKV1_9BACL Transcriptional regulator, MarR family          107   3e-22
B7GGY2.1 B7GGY2_ANOFW Transcriptional regulator, MarR family          102   1e-20

>B3KJT2.1 B3KJT2_9BACI Regulatory protein MarR
          Length = 150

 Score =  181 bits (460), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 81/132 (61%), Positives = 110/132 (83%)

Query: 3   VTRQINAQIKDNMAECLTNDQFLIMRLINSQEPCTSTFLAEAVAVGKSSITAIINRLAEA 62
           V+R+INAQI++ + E LT+DQF ++RLIN  + CTS++LAEA+AVGKSS+TAI+NRL +A
Sbjct: 19  VSRRINAQIREQLGEDLTSDQFQVVRLINGMDRCTSSYLAEALAVGKSSVTAIVNRLVDA 78

Query: 63  GFIERTRDENDRRQVYLSLTEKGKSTYHAAEKQVQEVISPYFSHFEEQDIEKFITMFEKL 122
           G I+RTRDE DRR VYL+LTE G + + +A++Q++E++SPY  HFEE+DIE FI+MFEKL
Sbjct: 79  GIIDRTRDEADRRLVYLTLTEYGHTIFESAQEQIREIVSPYLQHFEEKDIEMFISMFEKL 138

Query: 123 ALLMQETGGRNN 134
             LM E+GGR N
Sbjct: 139 GQLMFESGGRKN 150


>Q2B6Y0.1 Q2B6Y0_9BACI Transcriptional regulator (MarR family) protein
          Length = 153

 Score =  119 bits (299), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 59/121 (48%), Positives = 83/121 (68%), Gaps = 5/121 (4%)

Query: 13  DNMAEC-----LTNDQFLIMRLINSQEPCTSTFLAEAVAVGKSSITAIINRLAEAGFIER 67
           +N+ +C     LTNDQ   +R I+  E CTST LAE   V KS+ITAIINRL E G IER
Sbjct: 25  ENLVKCQLGDELTNDQHYTLRYIHHSENCTSTELAEVFDVKKSAITAIINRLFEKGLIER 84

Query: 68  TRDENDRRQVYLSLTEKGKSTYHAAEKQVQEVISPYFSHFEEQDIEKFITMFEKLALLMQ 127
           TRDE DRR VYL+L+EKG+  +   E+++ +++  +   F++Q+IE+FIT +EKL  ++ 
Sbjct: 85  TRDEKDRRVVYLTLSEKGRELFSETEERINKLVESFIKKFDQQEIEQFITTYEKLGSILL 144

Query: 128 E 128
           E
Sbjct: 145 E 145


>C5D5R5.1 C5D5R5_9BACI Transcriptional regulator, MarR family
          Length = 150

 Score =  115 bits (289), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 55/129 (42%), Positives = 84/129 (65%)

Query: 3   VTRQINAQIKDNMAECLTNDQFLIMRLINSQEPCTSTFLAEAVAVGKSSITAIINRLAEA 62
           V ++  A +K  + E +TNDQ+ ++R I  +  CTST LA    V KS+ITA+ NRL + 
Sbjct: 20  VMKKAAALVKCELDEDMTNDQYYLLRYIKKKAKCTSTELASLFGVNKSAITAMTNRLVKK 79

Query: 63  GFIERTRDENDRRQVYLSLTEKGKSTYHAAEKQVQEVISPYFSHFEEQDIEKFITMFEKL 122
           G I+RTRD+NDRR VYL+LTE+G       E+++ +++  + + F E++ E FI  +EKL
Sbjct: 80  GLIQRTRDQNDRRVVYLTLTERGDEWITETEEKIHKLVESFITKFSERETETFIQTYEKL 139

Query: 123 ALLMQETGG 131
           A ++QE  G
Sbjct: 140 ACILQEMEG 148


>B1DKV1.1 B1DKV1_9BACL Transcriptional regulator, MarR family
          Length = 158

 Score =  107 bits (268), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 57/129 (44%), Positives = 80/129 (62%)

Query: 3   VTRQINAQIKDNMAECLTNDQFLIMRLINSQEPCTSTFLAEAVAVGKSSITAIINRLAEA 62
           V R++ A  +D M   LT +Q   +R + +   CTST LA+   VGKSSITAII RL + 
Sbjct: 22  VERRLTAMFRDLMPNELTFEQSSTLRYLRTVGVCTSTELADTFCVGKSSITAIITRLFDK 81

Query: 63  GFIERTRDENDRRQVYLSLTEKGKSTYHAAEKQVQEVISPYFSHFEEQDIEKFITMFEKL 122
             +ERT DE DRR   L LT++G     A E+++QE+I+ Y  HF+EQ+   FI  +EKL
Sbjct: 82  QLLERTPDEKDRRVTLLRLTDEGIRMADAVERKIQELIAKYLQHFDEQEALAFIETYEKL 141

Query: 123 ALLMQETGG 131
           A++M +  G
Sbjct: 142 AMVMSQPPG 150


>B7GGY2.1 B7GGY2_ANOFW Transcriptional regulator, MarR family
          Length = 148

 Score =  102 bits (254), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 49/110 (44%), Positives = 75/110 (68%)

Query: 19  LTNDQFLIMRLINSQEPCTSTFLAEAVAVGKSSITAIINRLAEAGFIERTRDENDRRQVY 78
           +T+DQ+ ++R I  +  CTST LA+  AV KS+ITA+ NRL E G I R +DE+DRR + 
Sbjct: 34  ITHDQYYVLRYICKRGVCTSTELADVFAVNKSAITAMTNRLVEKGMISRGKDEDDRRIIS 93

Query: 79  LSLTEKGKSTYHAAEKQVQEVISPYFSHFEEQDIEKFITMFEKLALLMQE 128
           LSLT+KG+      E++V E++    +    ++IE+FI  +EKLA+++QE
Sbjct: 94  LSLTQKGEQWLVETERKVYELVETIMTKLSHEEIEQFIQTYEKLAMILQE 143


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.131    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 670,438,528
Number of extensions: 22000988
Number of successful extensions: 84548
Number of sequences better than 1.0e-05: 726
Number of HSP's gapped: 84956
Number of HSP's successfully gapped: 726
Length of query: 134
Length of database: 3,060,696,203
Length adjustment: 98
Effective length of query: 36
Effective length of database: 2,137,436,733
Effective search space: 76947722388
Effective search space used: 76947722388
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)