BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0509.0008.p
         (401 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KGM7.1 B3KGM7_9BACI Ribose 5-phosphate isomerase EC=5.3.1.6         148   1e-33
C2XV42.1 C2XV42_BACCE Ribose-5-phosphate isomerase A                  145   9e-33
B5UUR7.1 B5UUR7_BACCE Ribose 5-phosphate isomerase A EC=5.3.1.6       140   3e-31
C2QCT6.1 C2QCT6_BACCE Ribose-5-phosphate isomerase A                  140   3e-31
A9VID8.1 RPIA_BACWK Ribose-5-phosphate isomerase A EC=5.3.1.6         138   1e-30

>B3KGM7.1 B3KGM7_9BACI Ribose 5-phosphate isomerase EC=5.3.1.6
          Length = 168

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 84/162 (51%), Positives = 104/162 (64%), Gaps = 3/162 (1%)

Query: 7   SINVKQLAAEKAVEYVVDGMKVGLGTGSTAYWAIRKLGERVQEGLKITAVATSVASEEQA 66
            +N+K++AAE A +YV DGMK+GLGTGSTAY+AI K+GE V+ GL I AVATS ASE+ A
Sbjct: 4   EMNMKKIAAEHAAKYVQDGMKIGLGTGSTAYYAILKIGEMVRSGLSIQAVATSDASEKLA 63

Query: 67  RELGIPLVSFXXXXXXXXXXXXXXELNHDLELIKGGGGALLREKIVARGSKRMIVVADES 126
            E GIPL                 EL+  L LIKGGGGALLREKI A  S+R+++VADE+
Sbjct: 64  MEQGIPLTPVHQIDRLDLTIDGADELDDQLRLIKGGGGALLREKITAYHSERLVIVADEA 123

Query: 127 KAVGXXXXSGNFRSRSRLFLLPGNGPSLIWPSWAAQWSCGAA 168
           KAV      G FR R RL LLP +G    W S   + +C  +
Sbjct: 124 KAVAQL---GAFRCRLRLSLLPMSGRFGPWHSLVVRSNCAVS 162


>C2XV42.1 C2XV42_BACCE Ribose-5-phosphate isomerase A
          Length = 220

 Score =  145 bits (365), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 73/122 (59%), Positives = 90/122 (73%)

Query: 8   INVKQLAAEKAVEYVVDGMKVGLGTGSTAYWAIRKLGERVQEGLKITAVATSVASEEQAR 67
           +N+KQLA E A ++V DGMKVGLGTGST YW I+KLGERVQEGL I AV TS  +E  A+
Sbjct: 1   MNLKQLAGEYAADFVKDGMKVGLGTGSTVYWTIQKLGERVQEGLSIQAVPTSKETEVLAK 60

Query: 68  ELGIPLVSFXXXXXXXXXXXXXXELNHDLELIKGGGGALLREKIVARGSKRMIVVADESK 127
           +L IPL+S               E+N+DL+LIKGGGGALLREKIVA  S+++I++ADESK
Sbjct: 61  QLAIPLISLNETDILDLTIDGADEINNDLQLIKGGGGALLREKIVATSSEKLIIIADESK 120

Query: 128 AV 129
            V
Sbjct: 121 IV 122


>B5UUR7.1 B5UUR7_BACCE Ribose 5-phosphate isomerase A EC=5.3.1.6
          Length = 220

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 74/131 (56%), Positives = 89/131 (67%), Gaps = 3/131 (2%)

Query: 8   INVKQLAAEKAVEYVVDGMKVGLGTGSTAYWAIRKLGERVQEGLKITAVATSVASEEQAR 67
           +N+KQLA E A  +V DGMKVGLGTGST YW I+KLGERV+EGL   AV TS  +E  A 
Sbjct: 1   MNLKQLAGEYAANFVNDGMKVGLGTGSTVYWTIQKLGERVKEGLSFQAVPTSKETEALAH 60

Query: 68  ELGIPLVSFXXXXXXXXXXXXXXELNHDLELIKGGGGALLREKIVARGSKRMIVVADESK 127
           +L IPL+S               E++ DL+LIKGGGGALLREKIVA  SK++I++ADESK
Sbjct: 61  QLNIPLLSLNDVQSLDLTIDGADEIDSDLQLIKGGGGALLREKIVASSSKKLIIIADESK 120

Query: 128 AVGXXXXSGNF 138
            V      GNF
Sbjct: 121 LVTHL---GNF 128


>C2QCT6.1 C2QCT6_BACCE Ribose-5-phosphate isomerase A
          Length = 222

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 69/122 (56%), Positives = 87/122 (71%)

Query: 8   INVKQLAAEKAVEYVVDGMKVGLGTGSTAYWAIRKLGERVQEGLKITAVATSVASEEQAR 67
           +N+KQ+A E A  +V DGMKVGLGTGST YW I+KLG+RVQEGL I A+ TS  +E  A+
Sbjct: 2   VNLKQIAGEYAANFVQDGMKVGLGTGSTVYWTIQKLGQRVQEGLSIQAIPTSKETESLAQ 61

Query: 68  ELGIPLVSFXXXXXXXXXXXXXXELNHDLELIKGGGGALLREKIVARGSKRMIVVADESK 127
           +L IPL+S               E++ +L+LIKGGGGALLREKIVA  SK +I++ADESK
Sbjct: 62  QLNIPLISLNDIQTLDLTIDGADEIDSNLQLIKGGGGALLREKIVAASSKELIIIADESK 121

Query: 128 AV 129
            V
Sbjct: 122 LV 123


>A9VID8.1 RPIA_BACWK Ribose-5-phosphate isomerase A EC=5.3.1.6
          Length = 221

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 71/122 (58%), Positives = 86/122 (70%)

Query: 8   INVKQLAAEKAVEYVVDGMKVGLGTGSTAYWAIRKLGERVQEGLKITAVATSVASEEQAR 67
           +N+KQLA E A  +V DGM +GLGTGST YW I+KLG RVQEGL I AV TS  +E  A+
Sbjct: 2   MNLKQLAGEYAAGFVRDGMTIGLGTGSTVYWTIQKLGHRVQEGLSIQAVPTSKETEVLAK 61

Query: 68  ELGIPLVSFXXXXXXXXXXXXXXELNHDLELIKGGGGALLREKIVARGSKRMIVVADESK 127
           +L IPL+S               E+N+DL+LIKGGGGALLREKIVA  SK +I++ADESK
Sbjct: 62  QLSIPLISLNEIDILDLTIDGADEINNDLQLIKGGGGALLREKIVATSSKELIIIADESK 121

Query: 128 AV 129
            V
Sbjct: 122 LV 123


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.322    0.138    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 2,062,753,762
Number of extensions: 73712491
Number of successful extensions: 161871
Number of sequences better than 1.0e-05: 1155
Number of HSP's gapped: 160809
Number of HSP's successfully gapped: 1155
Length of query: 401
Length of database: 3,060,696,203
Length adjustment: 138
Effective length of query: 263
Effective length of database: 1,760,596,133
Effective search space: 463036782979
Effective search space used: 463036782979
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)