BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0509.0005.p (179 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KGM9.1 B3KGM9_9BACI Appr-1-p processing domain protein 208 2e-52 A9DQX3.1 A9DQX3_9FLAO Putative uncharacterized protein 179 1e-43 B7LT90.1 B7LT90_ESCF3 Putative uncharacterized protein ymdB 176 1e-42 Q8EYT0.1 Y4133_LEPIN UPF0189 protein LA_4133 175 2e-42 Q72M93.1 Y3295_LEPIC UPF0189 protein LIC_13295 174 3e-42 >B3KGM9.1 B3KGM9_9BACI Appr-1-p processing domain protein Length = 191 Score = 208 bits (529), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 102/177 (57%), Positives = 127/177 (71%), Gaps = 1/177 (0%) Query: 2 AISACQGDITSWQGDMIVNASNSGLFGGGGVDGAIHRAGGPQIAEECAAIRRKQGGILPG 61 ++S GDIT+W GD+IVNA+NSGL GG GVDGAIH AGGP+I E+C IR++QGG PG Sbjct: 10 SVSVFIGDITTWTGDIIVNAANSGLLGGKGVDGAIHSAGGPEIMEQCMEIRKQQGGCPPG 69 Query: 62 EAAVTCAGKLPLLGIIHTVGPIWKGGGAGEIATLARCYLNSLDAACTQGARSIAFPNIST 121 A +T AG+LP IIHTVGPIW+GGG E TLA CY NSL A GA+SIAFPNIST Sbjct: 70 NAVITGAGRLPAQHIIHTVGPIWEGGGRREEHTLAECYRNSLLLAIEVGAKSIAFPNIST 129 Query: 122 GVYNFPKALACQTALKTVVDYVKERGPGGHPLERIEFICFEKDNADLYEETLKRYSD 178 G+Y +PKA AC ALK V ++E P LER++F+CF +N +LY L+R++ Sbjct: 130 GIYEYPKAPACDVALKAVTKLLEEDLPDNR-LERVDFVCFSPENEELYVRWLERFTQ 185 >A9DQX3.1 A9DQX3_9FLAO Putative uncharacterized protein Length = 173 Score = 179 bits (453), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 87/175 (49%), Positives = 110/175 (62%), Gaps = 5/175 (2%) Query: 1 VAISACQGDITSWQGDMIVNASNSGLFGGGGVDGAIHRAGGPQIAEECAAIRRKQGGILP 60 + I Q DIT+ D IVNA+NS L GGGGVDGAIHR GG +I E C IR +QG Sbjct: 1 MKIKLLQADITTLNVDAIVNAANSSLLGGGGVDGAIHRKGGSEILEACKKIRTRQGKCNT 60 Query: 61 GEAAVTCAGKLPLLGIIHTVGPIWKGGGAGEIATLARCYLNSLDAACTQGARSIAFPNIS 120 GEA +T AGKLP +IHTVGP+W GG + LA CY NSLD A ++I FPNIS Sbjct: 61 GEAVITTAGKLPSKFVIHTVGPVWNNGGKNKKELLANCYKNSLDLAIEHNIKTIVFPNIS 120 Query: 121 TGVYNFPKALACQTALKTVVDYVKERGPGGHPLERIEFICFEKDNADLYEETLKR 175 TG+Y FPK LA + A+KTV Y + ++ + F CF+++N ++Y E LK Sbjct: 121 TGIYKFPKRLAAEIAIKTVATY-----EYKNKIDELYFCCFDQENYEIYHELLKN 170 >B7LT90.1 B7LT90_ESCF3 Putative uncharacterized protein ymdB Length = 182 Score = 176 bits (445), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 89/177 (50%), Positives = 113/177 (63%), Gaps = 6/177 (3%) Query: 3 ISACQGDITSWQGDMIVNASNSGLFGGGGVDGAIHRAGGPQIAEECAAIRRKQGGILPGE 62 I QGDIT D+IVNA+NS L GGGGVDGAIHRA GP++ E C +RR+QG G Sbjct: 10 IHVLQGDITQLAVDVIVNAANSSLMGGGGVDGAIHRAAGPELLEACQKVRRQQGECPTGH 69 Query: 63 AAVTCAGKLPLLGIIHTVGPIWKGGGAGEIATLARCYLNSLDAACTQGARSIAFPNISTG 122 A +T AG LP +IHTVGP+W+ G E L YLNSL A G +SIAFP ISTG Sbjct: 70 AVITIAGNLPARAVIHTVGPVWRDGEHNEDQLLHDAYLNSLKLAQANGYKSIAFPAISTG 129 Query: 123 VYNFPKALACQTALKTVVDYVKERGPGGHPL-ERIEFICFEKDNADLYEETLKRYSD 178 VY FP+A A + A+KTV D++ H L E+I F+C++++N+ LY L + D Sbjct: 130 VYGFPRAAAAEIAVKTVSDFITR-----HALPEQIYFVCYDEENSRLYNRLLTQQGD 181 >Q8EYT0.1 Y4133_LEPIN UPF0189 protein LA_4133 Length = 175 Score = 175 bits (443), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 85/175 (48%), Positives = 115/175 (65%), Gaps = 4/175 (2%) Query: 3 ISACQGDITSWQGDMIVNASNSGLFGGGGVDGAIHRAGGPQIAEECAAIRRKQGGILPGE 62 I + DIT + D IVNA+NS L GGGGVDGAIHRAGGP+I EEC IR KQG GE Sbjct: 5 IKLIKEDITQLEVDAIVNAANSSLLGGGGVDGAIHRAGGPEILEECYKIREKQGECKVGE 64 Query: 63 AAVTCAGKLPLLGIIHTVGPIWKGGGAGEIATLARCYLNSLDAACTQGARSIAFPNISTG 122 A +T AG+L IIHTVGPIW GG E L+ Y NSL A ++IAFPNISTG Sbjct: 65 AVITTAGRLNAKFIIHTVGPIWSGGNKNEDELLSNAYKNSLLLAKNHSLKTIAFPNISTG 124 Query: 123 VYNFPKALACQTALKTVVDYVKERGPGGHPLERIEFICFEKDNADLYEETLKRYS 177 +Y+FPK A + A+++V +++K+ + ++ + F+CF+ +N ++Y + L+ Y Sbjct: 125 IYHFPKERAAKIAIQSVTEFLKQ----DNQIQTVFFVCFDFENLEIYNKLLQTYK 175 >Q72M93.1 Y3295_LEPIC UPF0189 protein LIC_13295 Length = 175 Score = 174 bits (440), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 85/175 (48%), Positives = 114/175 (65%), Gaps = 4/175 (2%) Query: 3 ISACQGDITSWQGDMIVNASNSGLFGGGGVDGAIHRAGGPQIAEECAAIRRKQGGILPGE 62 I + DIT + D IVNA+NS L GGGGVDGAIHRAGGP+I EEC IR KQG GE Sbjct: 5 IKLIKEDITQLEVDAIVNAANSSLLGGGGVDGAIHRAGGPEILEECYKIREKQGECKVGE 64 Query: 63 AAVTCAGKLPLLGIIHTVGPIWKGGGAGEIATLARCYLNSLDAACTQGARSIAFPNISTG 122 A +T AG+L IIHTVGPIW GG E L+ Y NSL A ++IAFPNISTG Sbjct: 65 AVITTAGRLNAKFIIHTVGPIWSGGNKNEDELLSNAYKNSLLLAKNHSLKTIAFPNISTG 124 Query: 123 VYNFPKALACQTALKTVVDYVKERGPGGHPLERIEFICFEKDNADLYEETLKRYS 177 +Y+FPK A + A+++V ++K+ + ++ + F+CF+ +N ++Y + L+ Y Sbjct: 125 IYHFPKERAAKIAIQSVTKFLKQ----DNQIQTVFFVCFDFENLEIYNKLLQTYK 175 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.139 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,198,789,989 Number of extensions: 51707769 Number of successful extensions: 120649 Number of sequences better than 1.0e-05: 904 Number of HSP's gapped: 119416 Number of HSP's successfully gapped: 918 Length of query: 179 Length of database: 3,060,696,203 Length adjustment: 127 Effective length of query: 52 Effective length of database: 1,864,227,298 Effective search space: 96939819496 Effective search space used: 96939819496 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)