BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0509.0003.p (215 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DJF1.1 B1DJF1_9BACL Transaldolase EC=2.2.1.2 315 2e-84 C1KZ58.1 C1KZ58_LISMC Putative transaldolase 300 5e-80 B8DEQ7.1 B8DEQ7_LISMH Transaldolase, putative 300 6e-80 Q4EQB1.1 Q4EQB1_LISMO Transaldolase, putative 300 6e-80 Q4EM85.1 Q4EM85_LISMO Transaldolase, putative 300 6e-80 >B1DJF1.1 B1DJF1_9BACL Transaldolase EC=2.2.1.2 Length = 216 Score = 315 bits (807), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 151/211 (71%), Positives = 174/211 (82%) Query: 1 MKFFLDTGNIEEIKRITRLGLVDGVTTNPSLIAKEGRLFKDVIKEIVAIVPGPVSAEVIG 60 MKFFLDT N+EEI+RI RLGLVDGVTTNPSLIAKEGR FK+VI+EI + GP+SAEVIG Sbjct: 1 MKFFLDTANVEEIRRIARLGLVDGVTTNPSLIAKEGRDFKEVIQEIAGFIHGPISAEVIG 60 Query: 61 LKAEEMLKEAYEIAEWAPNVVIKLPMTEDGLEACYELTKKGIKTNVTLIFSXXXXXXXXX 120 +EEML EA++IA+WAPN+VIKLPMTEDGL A L++KGIKTNVTLIF+ Sbjct: 61 TTSEEMLMEAFDIADWAPNIVIKLPMTEDGLYATRALSEKGIKTNVTLIFTAAQGLIAAK 120 Query: 121 XXXTYISPFVGRLDDIGVDGMKLISDLKTILTNYGLQSEIIAASIRNIAHVEQAAIAGAH 180 TYISPFVGRLDDIG DG+ LI DL+TIL YG+ +EIIAASIR+I HVEQAA+AGAH Sbjct: 121 AGATYISPFVGRLDDIGTDGIGLIRDLRTILHTYGMHAEIIAASIRHIGHVEQAALAGAH 180 Query: 181 IATIPGSLLPSLWKHPLTDNGIERFLKDWEK 211 IATIPG+LLPSLWKHPLTD GI +FL DW+ Sbjct: 181 IATIPGALLPSLWKHPLTDAGIAKFLSDWDS 211 >C1KZ58.1 C1KZ58_LISMC Putative transaldolase Length = 218 Score = 300 bits (768), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 145/214 (67%), Positives = 176/214 (82%) Query: 1 MKFFLDTGNIEEIKRITRLGLVDGVTTNPSLIAKEGRLFKDVIKEIVAIVPGPVSAEVIG 60 MKFFLDT ++ EIKRI+ LGLVDGVTTNP++IAKEGR F++VIKEI +IV GPVSAEVIG Sbjct: 1 MKFFLDTASVSEIKRISELGLVDGVTTNPTIIAKEGRPFEEVIKEICSIVEGPVSAEVIG 60 Query: 61 LKAEEMLKEAYEIAEWAPNVVIKLPMTEDGLEACYELTKKGIKTNVTLIFSXXXXXXXXX 120 L+A++M++EA +A+WAPNVV+K+PMTE+GL+A + LT +GIKTNVTLIF+ Sbjct: 61 LEADKMVEEARILAKWAPNVVVKIPMTEEGLKAVHTLTAEGIKTNVTLIFTVSQGLMAAK 120 Query: 121 XXXTYISPFVGRLDDIGVDGMKLISDLKTILTNYGLQSEIIAASIRNIAHVEQAAIAGAH 180 TYISPF+GRLDDIG DGM LI +LK +L NYGL++EII+ASIR+I H+E+AA AGAH Sbjct: 121 AGATYISPFLGRLDDIGTDGMILIKNLKKVLDNYGLKAEIISASIRHIGHLEEAAEAGAH 180 Query: 181 IATIPGSLLPSLWKHPLTDNGIERFLKDWEKVPQ 214 IATIPGSL P LW HPLTD GIE FLKDWE Q Sbjct: 181 IATIPGSLFPKLWSHPLTDKGIEGFLKDWEAFSQ 214 >B8DEQ7.1 B8DEQ7_LISMH Transaldolase, putative Length = 218 Score = 300 bits (768), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 145/214 (67%), Positives = 176/214 (82%) Query: 1 MKFFLDTGNIEEIKRITRLGLVDGVTTNPSLIAKEGRLFKDVIKEIVAIVPGPVSAEVIG 60 MKFFLDT ++ EIKRI+ LGLVDGVTTNP++IAKEGR F++VIKEI +IV GPVSAEVIG Sbjct: 1 MKFFLDTASVSEIKRISELGLVDGVTTNPTIIAKEGRPFEEVIKEICSIVDGPVSAEVIG 60 Query: 61 LKAEEMLKEAYEIAEWAPNVVIKLPMTEDGLEACYELTKKGIKTNVTLIFSXXXXXXXXX 120 L+A++M++EA +A+WAPNVV+K+PMTE+GL+A + LT +GIKTNVTLIF+ Sbjct: 61 LEADKMVEEARILAKWAPNVVVKIPMTEEGLKAVHTLTAEGIKTNVTLIFTVSQGLMAAK 120 Query: 121 XXXTYISPFVGRLDDIGVDGMKLISDLKTILTNYGLQSEIIAASIRNIAHVEQAAIAGAH 180 TYISPF+GRLDDIG DGM LI +LK +L NYGL++EII+ASIR+I H+E+AA AGAH Sbjct: 121 AGATYISPFLGRLDDIGTDGMILIKNLKKVLDNYGLKAEIISASIRHIGHLEEAAEAGAH 180 Query: 181 IATIPGSLLPSLWKHPLTDNGIERFLKDWEKVPQ 214 IATIPGSL P LW HPLTD GIE FLKDWE Q Sbjct: 181 IATIPGSLFPKLWSHPLTDKGIEGFLKDWEAFSQ 214 >Q4EQB1.1 Q4EQB1_LISMO Transaldolase, putative Length = 218 Score = 300 bits (768), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 145/214 (67%), Positives = 176/214 (82%) Query: 1 MKFFLDTGNIEEIKRITRLGLVDGVTTNPSLIAKEGRLFKDVIKEIVAIVPGPVSAEVIG 60 MKFFLDT ++ EIKRI+ LGLVDGVTTNP++IAKEGR F++VIKEI +IV GPVSAEVIG Sbjct: 1 MKFFLDTASVSEIKRISELGLVDGVTTNPTIIAKEGRPFEEVIKEICSIVDGPVSAEVIG 60 Query: 61 LKAEEMLKEAYEIAEWAPNVVIKLPMTEDGLEACYELTKKGIKTNVTLIFSXXXXXXXXX 120 L+A++M++EA +A+WAPNVV+K+PMTE+GL+A + LT +GIKTNVTLIF+ Sbjct: 61 LEADKMVEEARILAKWAPNVVVKIPMTEEGLKAVHTLTAEGIKTNVTLIFTVSQGLMAAK 120 Query: 121 XXXTYISPFVGRLDDIGVDGMKLISDLKTILTNYGLQSEIIAASIRNIAHVEQAAIAGAH 180 TYISPF+GRLDDIG DGM LI +LK +L NYGL++EII+ASIR+I H+E+AA AGAH Sbjct: 121 AGATYISPFLGRLDDIGTDGMILIKNLKKVLDNYGLKAEIISASIRHIGHLEEAAEAGAH 180 Query: 181 IATIPGSLLPSLWKHPLTDNGIERFLKDWEKVPQ 214 IATIPGSL P LW HPLTD GIE FLKDWE Q Sbjct: 181 IATIPGSLFPKLWSHPLTDKGIEGFLKDWEAFSQ 214 >Q4EM85.1 Q4EM85_LISMO Transaldolase, putative Length = 218 Score = 300 bits (768), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 145/214 (67%), Positives = 176/214 (82%) Query: 1 MKFFLDTGNIEEIKRITRLGLVDGVTTNPSLIAKEGRLFKDVIKEIVAIVPGPVSAEVIG 60 MKFFLDT ++ EIKRI+ LGLVDGVTTNP++IAKEGR F++VIKEI +IV GPVSAEVIG Sbjct: 1 MKFFLDTASVSEIKRISELGLVDGVTTNPTIIAKEGRPFEEVIKEICSIVDGPVSAEVIG 60 Query: 61 LKAEEMLKEAYEIAEWAPNVVIKLPMTEDGLEACYELTKKGIKTNVTLIFSXXXXXXXXX 120 L+A++M++EA +A+WAPNVV+K+PMTE+GL+A + LT +GIKTNVTLIF+ Sbjct: 61 LEADKMVEEARILAKWAPNVVVKIPMTEEGLKAVHTLTAEGIKTNVTLIFTVSQGLMAAK 120 Query: 121 XXXTYISPFVGRLDDIGVDGMKLISDLKTILTNYGLQSEIIAASIRNIAHVEQAAIAGAH 180 TYISPF+GRLDDIG DGM LI +LK +L NYGL++EII+ASIR+I H+E+AA AGAH Sbjct: 121 AGATYISPFLGRLDDIGTDGMILIKNLKKVLDNYGLKAEIISASIRHIGHLEEAAEAGAH 180 Query: 181 IATIPGSLLPSLWKHPLTDNGIERFLKDWEKVPQ 214 IATIPGSL P LW HPLTD GIE FLKDWE Q Sbjct: 181 IATIPGSLFPKLWSHPLTDKGIEGFLKDWEAFSQ 214 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.138 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,207,275,914 Number of extensions: 44111450 Number of successful extensions: 124160 Number of sequences better than 1.0e-05: 1816 Number of HSP's gapped: 122999 Number of HSP's successfully gapped: 1816 Length of query: 215 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 85 Effective length of database: 1,835,964,253 Effective search space: 156056961505 Effective search space used: 156056961505 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)