BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0509.0002.p
         (201 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KGN8.1 B3KGN8_9BACI Regulatory protein MarR                         140   5e-32
C1T7W4.1 C1T7W4_9FIRM Transcriptional regulator, MarR family          108   2e-22
A9U7Q6.1 A9U7Q6_PHYPA Predicted protein                               108   2e-22
B8FPH2.1 B8FPH2_DESHD Transcriptional regulator, MarR family          107   4e-22
Q24R49.1 Q24R49_DESHY Putative uncharacterized protein                107   5e-22

>B3KGN8.1 B3KGN8_9BACI Regulatory protein MarR
          Length = 154

 Score =  140 bits (354), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 71/145 (48%), Positives = 94/145 (64%), Gaps = 2/145 (1%)

Query: 55  MPLTSPQEFLGFLLGSTHRRISNAFARVLKPYDITPEQWSILLMICDREGINQKEVXXXX 114
           +P  +P   +GF LG T+RR S  FA  LKPYDITPEQW +L  I + EG+NQKEV    
Sbjct: 3   IPKRNPS--IGFHLGYTYRRASQLFANALKPYDITPEQWLVLYHIGEHEGLNQKEVAAKA 60

Query: 115 XKDQPTTARIVELLQKKGFIHKTMSPTDRRAFQLYATETGKSLIKRTVSLEQQTIAAAVN 174
            KDQPTT RI++LL+KKG+  K++S  DRRAFQL+ T+TGK LI+ T ++E Q  +  + 
Sbjct: 61  DKDQPTTTRILDLLEKKGYTRKSVSVNDRRAFQLFLTDTGKELIEATTAIESQCGSQLIE 120

Query: 175 GLRPEQIEDLRSMLELIYHNTGNTH 199
           G+  +Q+E     L  I  N  N H
Sbjct: 121 GIDEKQLEMFWDTLSRINANIHNLH 145


>C1T7W4.1 C1T7W4_9FIRM Transcriptional regulator, MarR family
          Length = 141

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/131 (38%), Positives = 83/131 (63%)

Query: 64  LGFLLGSTHRRISNAFARVLKPYDITPEQWSILLMICDREGINQKEVXXXXXKDQPTTAR 123
           +GF+L  T+ R+ N      K YD+TPEQW++L  + +REGI+ KE+     KDQPTT R
Sbjct: 9   IGFILNRTNTRMKNNLLHHFKDYDVTPEQWAVLNCLWEREGISPKELAELTSKDQPTTVR 68

Query: 124 IVELLQKKGFIHKTMSPTDRRAFQLYATETGKSLIKRTVSLEQQTIAAAVNGLRPEQIED 183
           ++  L+KKGFI + ++P D R++ ++ T  G+ L  +   L  Q +  A+ G+  +QIE+
Sbjct: 69  MLSKLEKKGFITRQVNPNDNRSYLIHLTSEGQELKDKLFPLAFQALDKALKGIDKKQIEE 128

Query: 184 LRSMLELIYHN 194
           ++ +L  I++N
Sbjct: 129 VKIVLNKIFNN 139


>A9U7Q6.1 A9U7Q6_PHYPA Predicted protein
          Length = 131

 Score =  108 bits (270), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/122 (43%), Positives = 78/122 (63%)

Query: 73  RRISNAFARVLKPYDITPEQWSILLMICDREGINQKEVXXXXXKDQPTTARIVELLQKKG 132
           RR+S+ FA +LKPY ITPEQWS+L  +  +EGINQKE+     KDQP+  RI+++L KK 
Sbjct: 3   RRMSSIFAGLLKPYGITPEQWSVLYQVHLQEGINQKELALRSGKDQPSITRILDVLDKKE 62

Query: 133 FIHKTMSPTDRRAFQLYATETGKSLIKRTVSLEQQTIAAAVNGLRPEQIEDLRSMLELIY 192
            I +   P DRRA+ +YAT   + L+K T+ +E +     + G+  EQ+E L  +++ I 
Sbjct: 63  LIQRKPDPADRRAYLIYATPAVQELMKETIPMELKLNDELIAGITDEQLESLNRIMDQIN 122

Query: 193 HN 194
            N
Sbjct: 123 KN 124


>B8FPH2.1 B8FPH2_DESHD Transcriptional regulator, MarR family
          Length = 140

 Score =  107 bits (268), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 50/137 (36%), Positives = 83/137 (60%)

Query: 58  TSPQEFLGFLLGSTHRRISNAFARVLKPYDITPEQWSILLMICDREGINQKEVXXXXXKD 117
           + P   LGF+L  T+ ++ NA  ++LKPYDITPEQW  L  +  ++GI+ K +     KD
Sbjct: 3   SGPDNSLGFVLNRTNNKLKNALIQILKPYDITPEQWGTLKRLWQQDGISPKCIAELTFKD 62

Query: 118 QPTTARIVELLQKKGFIHKTMSPTDRRAFQLYATETGKSLIKRTVSLEQQTIAAAVNGLR 177
           QPTT RI++ L+KKG I + ++  D R++ +Y T+ GK L    + L ++ +   + G+ 
Sbjct: 63  QPTTVRILKKLEKKGLIFREVNLADNRSYLIYLTDRGKELKDILIPLTEKKLKEVLKGID 122

Query: 178 PEQIEDLRSMLELIYHN 194
            ++++ L  +L  IY N
Sbjct: 123 QQEVQKLLEILNRIYEN 139


>Q24R49.1 Q24R49_DESHY Putative uncharacterized protein
          Length = 140

 Score =  107 bits (267), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 50/137 (36%), Positives = 83/137 (60%)

Query: 58  TSPQEFLGFLLGSTHRRISNAFARVLKPYDITPEQWSILLMICDREGINQKEVXXXXXKD 117
           + P   LGF+L  T+ ++ NA  ++LKPYDITPEQW  L  +  ++GI+ K +     KD
Sbjct: 3   SGPDNSLGFVLNRTNNKLKNALIQILKPYDITPEQWGTLKRLWQQDGISPKCIAELTFKD 62

Query: 118 QPTTARIVELLQKKGFIHKTMSPTDRRAFQLYATETGKSLIKRTVSLEQQTIAAAVNGLR 177
           QPTT RI++ L+KKG I + ++  D R++ +Y T+ GK L    + L ++ +   + G+ 
Sbjct: 63  QPTTVRILKKLEKKGLIFREVNFADNRSYLIYLTDRGKELKDILIPLTEKKLKEVLKGID 122

Query: 178 PEQIEDLRSMLELIYHN 194
            ++++ L  +L  IY N
Sbjct: 123 QQEVQKLLEILNRIYEN 139


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.320    0.134    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 972,277,599
Number of extensions: 31186363
Number of successful extensions: 74859
Number of sequences better than 1.0e-05: 553
Number of HSP's gapped: 75189
Number of HSP's successfully gapped: 553
Length of query: 201
Length of database: 3,060,696,203
Length adjustment: 129
Effective length of query: 72
Effective length of database: 1,845,385,268
Effective search space: 132867739296
Effective search space used: 132867739296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)