BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0506.0003.p
         (730 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q4MML0.1 Q4MML0_BACCE Putative uncharacterized protein                113   7e-23

>Q4MML0.1 Q4MML0_BACCE Putative uncharacterized protein
          Length = 193

 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 80/165 (48%), Positives = 100/165 (60%), Gaps = 1/165 (0%)

Query: 466 LFIYFSLAGVLXNNSLTARSLPLPAGSSSLRISLPPSMSKALPLPSSLLEVSRDSLDTEA 525
           +FIY   AGVL N   T  S+P      S  I  PP + + +P  S +L ++ +SL TEA
Sbjct: 2   VFIYLRRAGVLKNKFCTVISVPFRLAVFSCFIMSPPLIIRCVPGASPVLVINSNSL-TEA 60

Query: 526 ILGRASPRNPREVIXNKSLPFTILLVAXRXKAVSQSSGSIPEPLSFTRMLCSPPSSTDTS 585
           ILG ASPR P  ++ N+S    ILLVA R KA  QSS ++P PLS  R+   P SS   S
Sbjct: 61  ILGNASPRKPSVLMRNRSFSSLILLVACRSKATIQSSSAMPSPLSMMRIFDKPASSKWIS 120

Query: 586 MRVLPASMAFSTSSLTTEAGRSTTSPAAIWLAICSSSTXILAMFI 630
           + VL AS+ FSTSS TTEAGRSTTSPAAI     SSS  I  +++
Sbjct: 121 IDVLFASIEFSTSSFTTEAGRSTTSPAAIKFESWSSSLRIFPIYL 165


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.341    0.146    0.464 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 3,124,668,921
Number of extensions: 103808779
Number of successful extensions: 340143
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 340142
Number of HSP's successfully gapped: 1
Length of query: 730
Length of database: 3,060,696,203
Length adjustment: 143
Effective length of query: 587
Effective length of database: 1,713,491,058
Effective search space: 1005819251046
Effective search space used: 1005819251046
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (22.0 bits)
S2: 135 (56.6 bits)