BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0505.0010.p (216 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0ZJL4.1 C0ZJL4_BREBN Probable transcriptional regulator 142 3e-32 B0ABB5.1 B0ABB5_9CLOT Putative uncharacterized protein 117 6e-25 C2PF04.1 C2PF04_BACCE Catabolite protein activator 108 2e-22 C2R813.1 C2R813_BACCE Catabolite protein activator 108 3e-22 B7H5E4.1 B7H5E4_BACC4 Catabolite gene activator 108 4e-22 >C0ZJL4.1 C0ZJL4_BREBN Probable transcriptional regulator Length = 232 Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 65/161 (40%), Positives = 111/161 (68%) Query: 6 MQWIADQDKIRMLAGHNGMMEIFSSGAISGMELRRYSDGEAICSVGDRLEHMFILVEGRL 65 M+ + D+ + L ++ + +IF + + M L + G+ +CS GD+L HM+ +++G++ Sbjct: 1 MKELHDRTLLHTLVQNSPLPDIFDAVTLHEMRLYQAEKGDILCSKGDQLHHMYFILKGKI 60 Query: 66 KIHTLLPNGKSLLVRFARPMSVIGDVELLRQYPVKNEVVSMGESLLLAAGRALVLKEFEE 125 KI T LPNGKSLL+RF P+++IGDVE + Q V+N V + SL+++ ++ ++++ Sbjct: 61 KIFTTLPNGKSLLLRFNNPLAIIGDVEYVTQCEVRNTVEFVHRSLVVSLPFHVLQEKYQN 120 Query: 126 NTALLRFLVGELSHKMYTLGQTTALNLLYPLENRFASYLLS 166 + L+F++ ++SHK+YT +T+LNLLYP+ENRFASYLLS Sbjct: 121 HPPFLQFILHKISHKLYTSSNSTSLNLLYPVENRFASYLLS 161 >B0ABB5.1 B0ABB5_9CLOT Putative uncharacterized protein Length = 238 Score = 117 bits (293), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 98/161 (60%) Query: 6 MQWIADQDKIRMLAGHNGMMEIFSSGAISGMELRRYSDGEAICSVGDRLEHMFILVEGRL 65 M I D K+ + EIFSS ME+ + E IC G+ L+++++ VEG+ Sbjct: 14 MLKINDNKKLNYYINKYNINEIFSSDIYPYMEIHHFKKNEHICLSGEELKYLYLFVEGKS 73 Query: 66 KIHTLLPNGKSLLVRFARPMSVIGDVELLRQYPVKNEVVSMGESLLLAAGRALVLKEFEE 125 K++ PNGKSLLVRF P+ ++G++ELL + + + ++ + + +A R ++ +++ + Sbjct: 74 KVYITTPNGKSLLVRFYSPVQIVGEIELLNKIEFQCNIQAIRDCICIAVPRKIIEEKYLK 133 Query: 126 NTALLRFLVGELSHKMYTLGQTTALNLLYPLENRFASYLLS 166 ++ L ++ L+ K+ +L + ++N+LYPLENR ASY+L+ Sbjct: 134 DSKFLHYISTHLALKLASLSVSNSVNILYPLENRLASYILA 174 >C2PF04.1 C2PF04_BACCE Catabolite protein activator Length = 232 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 47/146 (32%), Positives = 92/146 (63%) Query: 22 NGMMEIFSSGAISGMELRRYSDGEAICSVGDRLEHMFILVEGRLKIHTLLPNGKSLLVRF 81 N M+EIFS + ++ + G+ IC++ D ++ ++ +V+G++K++T+ P GK L++RF Sbjct: 17 NKMIEIFSEIDTAYFQINHFEKGKFICNIDDAMDRLYFVVKGKVKVYTITPEGKKLILRF 76 Query: 82 ARPMSVIGDVELLRQYPVKNEVVSMGESLLLAAGRALVLKEFEENTALLRFLVGELSHKM 141 P++V+GD+EL++ N V + + + ++ A++ + + + FL+ +++ + Sbjct: 77 INPLAVVGDIELIQNSKAHNVVEACSDVIAISISHAVIRNKLLHDPIFMNFLLENIANTL 136 Query: 142 YTLGQTTALNLLYPLENRFASYLLSL 167 + TALNLLYP+E R ASYLLS+ Sbjct: 137 KISTRFTALNLLYPVEVRVASYLLSI 162 >C2R813.1 C2R813_BACCE Catabolite protein activator Length = 237 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 101/169 (59%), Gaps = 8/169 (4%) Query: 2 GELPMQWIADQDKIRMLAGH---NGMMEIFSSGAISGMELRRYSDGEAICSVGDRLEHMF 58 GE+ M+ DK ++ + N +EIFS + +L + GE IC++ D ++ ++ Sbjct: 3 GEMNME-----DKSALIKHYLRTNKTLEIFSEIDTAYFQLNHFEKGELICNIDDEMDRLY 57 Query: 59 ILVEGRLKIHTLLPNGKSLLVRFARPMSVIGDVELLRQYPVKNEVVSMGESLLLAAGRAL 118 +V+G++K++T+ P GK L++RF P++++GD+EL++ N V + + + ++ + Sbjct: 58 FVVKGKVKVYTITPEGKKLILRFINPLAIVGDIELIQNSKAHNVVEACSDVVAISISNTV 117 Query: 119 VLKEFEENTALLRFLVGELSHKMYTLGQTTALNLLYPLENRFASYLLSL 167 + + + ++FL+ +++ + + TALNLLYP+E R ASYLLS+ Sbjct: 118 IRNKLLHDPIFMKFLLENIANTLKISTRFTALNLLYPVEVRVASYLLSI 166 >B7H5E4.1 B7H5E4_BACC4 Catabolite gene activator Length = 231 Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 91/146 (62%) Query: 22 NGMMEIFSSGAISGMELRRYSDGEAICSVGDRLEHMFILVEGRLKIHTLLPNGKSLLVRF 81 N +EIFS + +L + GE IC++ D ++ ++ +V+G++K++T+ P GK L++RF Sbjct: 15 NKTLEIFSEIDTAYFQLNHFEKGELICNIDDEMDRLYFVVKGKVKVYTITPEGKKLILRF 74 Query: 82 ARPMSVIGDVELLRQYPVKNEVVSMGESLLLAAGRALVLKEFEENTALLRFLVGELSHKM 141 P++++GD+EL++ N V + + + ++ ++ + + ++FL+ +++ + Sbjct: 75 INPLAIVGDIELIQNSKAHNVVEACSDVVAISISNTVIRNKLLHDPIFMKFLLENIANTL 134 Query: 142 YTLGQTTALNLLYPLENRFASYLLSL 167 + TALNLLYP+E R ASYLLS+ Sbjct: 135 KISTRFTALNLLYPVEVRVASYLLSI 160 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.324 0.139 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,168,268,741 Number of extensions: 41894856 Number of successful extensions: 108970 Number of sequences better than 1.0e-05: 290 Number of HSP's gapped: 108997 Number of HSP's successfully gapped: 290 Length of query: 216 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 86 Effective length of database: 1,835,964,253 Effective search space: 157892925758 Effective search space used: 157892925758 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 128 (53.9 bits)