BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0505.0003.p (221 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KCV8.1 B3KCV8_9BACI Response regulator receiver 228 4e-58 B1D7E8.1 B1D7E8_9BACL Two component transcriptional regulator, L... 215 2e-54 C0ZDW4.1 C0ZDW4_BREBN Two-component response regulator 212 1e-53 C0ZBD9.1 C0ZBD9_BREBN Two-component response regulator 168 2e-40 C4CQK3.1 C4CQK3_9CHLR Response regulator containing a CheY-like ... 159 2e-37 >B3KCV8.1 B3KCV8_9BACI Response regulator receiver Length = 219 Score = 228 bits (580), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 117/213 (54%), Positives = 152/213 (71%), Gaps = 2/213 (0%) Query: 5 RVLVVDDHAHAREAMCEILAMDERFEVIGAVGSGAEAIERTGLWMPDLILIDIQMPEMDG 64 RVL++DD ARE + IL+ D FEV+ SG +A+E T +WMPD+IL+DIQMP M G Sbjct: 7 RVLIIDDSDLAREGIRTILSSDPTFEVVAEGQSGEDALELTEIWMPDIILMDIQMPGMGG 66 Query: 65 LETTRRIKLEFPYVKIVIVTVSDEISYLFEALKQGAQGYLLKNLAPSTWIEYLLAIVSEE 124 LE T+R+K +FPYVKIV+VTVSD+I++LF+ALK+GAQGYLLKNL P +W EYL AI +E Sbjct: 67 LEATKRVKDKFPYVKIVMVTVSDDIAHLFDALKRGAQGYLLKNLNPESWHEYLKAIAVDE 126 Query: 125 VPLSRELAFQILKEFAVASVKE-EREALTAREKEILGCVSSGSTNKEIAATLGISEHTVX 183 P+SRELAF+ILKEF+ + + LTAREKEILG V+ G +N++I++ L ISE+TV Sbjct: 127 APVSRELAFRILKEFSQYDKPDPSKSPLTAREKEILGLVAEGLSNRDISSDLCISENTVK 186 Query: 184 XXXXXXXXXXXXXXRTQLTRYAMEQG-LASRER 215 R QLTRYA EQG + R+R Sbjct: 187 NHLKNILQKLHLENRVQLTRYAFEQGWMGKRQR 219 >B1D7E8.1 B1D7E8_9BACL Two component transcriptional regulator, LuxR family Length = 235 Score = 215 bits (547), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 110/226 (48%), Positives = 143/226 (63%), Gaps = 18/226 (7%) Query: 3 RCRVLVVDDHAHAREAMCEILAMDERFEVIGAVGSGAEAIERTGLWMPDLILIDIQMPEM 62 RV +VDDH H RE M EI+ D F V+G SG EAI R +PDL+L+DI MP M Sbjct: 7 HIRVFLVDDHPHGREGMREIIGADPEFMVVGEAASGEEAIARIDDVLPDLVLMDINMPGM 66 Query: 63 DGLETTRRIKLEFPYVKIVIVTVSDEISYLFEALKQGAQGYLLKNLAPSTWIEYLLAIVS 122 GLE T+++K +P +KIV+VTVSD+I++LFEA+K+GAQGYL KNL+PS W EYL A+V Sbjct: 67 GGLEATQQLKYLYPSLKIVMVTVSDDITHLFEAIKRGAQGYLFKNLSPSAWREYLRAVVD 126 Query: 123 EEVPLSRELAFQILKEFAVASVKEEREA------------------LTAREKEILGCVSS 164 +E P+S+E+AF++L+EF A+ + A LTAREK+IL V + Sbjct: 127 DEAPMSKEIAFRLLQEFTSAASNGIKPAKTGSKPGHAGDASAMTTPLTAREKDILERVVT 186 Query: 165 GSTNKEIAATLGISEHTVXXXXXXXXXXXXXXXRTQLTRYAMEQGL 210 G +NKEIA G+SEHTV R QLTRYA EQG+ Sbjct: 187 GESNKEIAVAFGLSEHTVKNHLKNILQKLHLDNRVQLTRYAYEQGM 232 >C0ZDW4.1 C0ZDW4_BREBN Two-component response regulator Length = 215 Score = 212 bits (540), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 111/214 (51%), Positives = 144/214 (67%), Gaps = 1/214 (0%) Query: 1 MNRCRVLVVDDHAHAREAMCEILAMDERFEVIGAVGSGAEAIERTGLWMPDLILIDIQMP 60 M+ RV+++DD+ ARE + IL D FEV+ SG EAI + WMPDLIL+DIQMP Sbjct: 1 MSTFRVMIIDDNEMAREGIRMILESDPIFEVVAEGSSGEEAIILSERWMPDLILMDIQMP 60 Query: 61 EMDGLETTRRIKLEFPYVKIVIVTVSDEISYLFEALKQGAQGYLLKNLAPSTWIEYLLAI 120 M GL T+ +K + PYVK+V+VTVSD+I +LF+ALK+GAQGYLLKN+ P W EYL AI Sbjct: 61 GMGGLAATKCLKEKLPYVKVVMVTVSDDIVHLFDALKKGAQGYLLKNMKPEAWHEYLRAI 120 Query: 121 VSEEVPLSRELAFQILKEFA-VASVKEEREALTAREKEILGCVSSGSTNKEIAATLGISE 179 +E P++RELAF+ILKEFA + S + LT+RE+EILG V+ G +N++I++ L ISE Sbjct: 121 AVDETPMTRELAFRILKEFAPIGSDVAQPSKLTSREREILGLVAKGLSNRDISSKLVISE 180 Query: 180 HTVXXXXXXXXXXXXXXXRTQLTRYAMEQGLASR 213 HTV R QL RYA EQ SR Sbjct: 181 HTVKNHLKNILQKLHLENRVQLARYAFEQSWMSR 214 >C0ZBD9.1 C0ZBD9_BREBN Two-component response regulator Length = 215 Score = 168 bits (426), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 91/212 (42%), Positives = 127/212 (59%), Gaps = 2/212 (0%) Query: 1 MNRCRVLVVDDHAHAREAMCEILAMDERFEVIGAVGSGAEAIERTGLWMPDLILIDIQMP 60 MN RVL+ DDH AR A+ +L D FEVIG +G EA G PDL+L+DI MP Sbjct: 1 MNAYRVLIADDHPMARMAIRSLLDPDPSFEVIGEAQNGEEAFLLCGQIQPDLVLMDINMP 60 Query: 61 EMDGLETTRRIKLEFPYVKIVIVTVSDEISYLFEALKQGAQGYLLKNLAPSTWIEYLLAI 120 + GLE TR +K +P++K+VI++VSD+++ L A++ GAQGYLLKNL P WI YL A+ Sbjct: 61 KWSGLEATREVKKAYPHIKVVILSVSDDVADLITAIQFGAQGYLLKNLEPDDWINYLHAL 120 Query: 121 VSEEVPLSRELAFQILKEFAVASVKEER--EALTAREKEILGCVSSGSTNKEIAATLGIS 178 + E+ L+RE+A +++ F +E LT RE+EI+ V +G TN+EI+ L I+ Sbjct: 121 LGEDSELTREMATRLMYRFRQEEATDEMVPAVLTPREREIVMYVGAGKTNREISEALIIA 180 Query: 179 EHTVXXXXXXXXXXXXXXXRTQLTRYAMEQGL 210 E+TV R QL YA+ L Sbjct: 181 ENTVKNHLKNILEKLQLANRVQLAAYAVRHHL 212 >C4CQK3.1 C4CQK3_9CHLR Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 223 Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 87/214 (40%), Positives = 128/214 (59%), Gaps = 4/214 (1%) Query: 1 MNRCRVLVVDDHAHAREAMCEILAMDERFEVIGAVGSGAEAIERTGLWMPDLILIDIQMP 60 M++ +L+VDDHA RE + +L+ F V+G SG EA+ER +PD++L+DI +P Sbjct: 1 MSQISLLLVDDHALFREGLASLLSYQPDFTVVGEAASGEEAVERARELVPDVVLMDIDLP 60 Query: 61 EMDGLETTRRIKLEFPYVKIVIVTVSDEISYLFEALKQGAQGYLLKNLAPSTWIEYLLAI 120 +DG+E TRRIK + P V++V++TV D+ LF+++K GAQGYL+KN+ + ++ L + Sbjct: 61 GIDGIEATRRIKRQLPEVRVVMLTVYDDHERLFQSIKAGAQGYLIKNIRSAELLDQLRGL 120 Query: 121 VSEEVPLSRELAFQILKEFA----VASVKEEREALTAREKEILGCVSSGSTNKEIAATLG 176 E +SR +A +IL+EFA A + E L+ RE E+L V+ +NKEIAA L Sbjct: 121 ARGEAAISRRMAARILEEFARLERQAEILEPDGGLSPREVEVLELVALRLSNKEIAARLS 180 Query: 177 ISEHTVXXXXXXXXXXXXXXXRTQLTRYAMEQGL 210 ISEHTV R Q YA+ GL Sbjct: 181 ISEHTVKNHLKNILAKLQLSSRRQAAAYAVAHGL 214 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.134 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,097,982,963 Number of extensions: 38829045 Number of successful extensions: 173616 Number of sequences better than 1.0e-05: 11952 Number of HSP's gapped: 179289 Number of HSP's successfully gapped: 11956 Length of query: 221 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 90 Effective length of database: 1,826,543,238 Effective search space: 164388891420 Effective search space used: 164388891420 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)