BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0504.0058.p
         (150 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KIL5.1 B3KIL5_9BACI Membrane protein-like protein                   208   1e-52
B1DLE0.1 B1DLE0_9BACL Membrane protein-like protein                   186   7e-46
C0ZEZ7.1 C0ZEZ7_BREBN Putative uncharacterized protein                114   3e-24
Q9KAB8.1 Q9KAB8_BACHD BH2371 protein                                  105   2e-21
Q5L0E7.1 Q5L0E7_GEOKA Hypothetical conserved protein                  104   3e-21

>B3KIL5.1 B3KIL5_9BACI Membrane protein-like protein
          Length = 149

 Score =  208 bits (530), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 110/149 (73%), Positives = 131/149 (87%)

Query: 1   VSQEEPRLNDYGMQTYNTRDLIVREDIMGKAKELASLISTSEEVKHFQQAEQKIQNHERV 60
           ++ +  R N YGM TYNTR+LI+R+DI+ KA ELA+LISTSEEV+ F+QAE+KIQNHERV
Sbjct: 1   MAHDHVRTNTYGMSTYNTRELIIRDDILAKAGELANLISTSEEVQMFKQAEEKIQNHERV 60

Query: 61  QSLIAAIKKKQKEIVAFESFKNKEMVAKIEREIEVLQDEIDEIPVVNEFQQSQSDINYLL 120
           Q+LI  IKKKQKEIVAFE+F+NK+MVAKIEREIE LQ+EID IP+V EFQQSQSDINYLL
Sbjct: 61  QNLIKTIKKKQKEIVAFETFQNKDMVAKIEREIEELQEEIDSIPLVMEFQQSQSDINYLL 120

Query: 121 QLVISVIRDTVSEKINVEAGTEAPPSTCG 149
           QLV+SVI DTVSEK+NVE G + PPS+CG
Sbjct: 121 QLVVSVIHDTVSEKVNVETGKDTPPSSCG 149


>B1DLE0.1 B1DLE0_9BACL Membrane protein-like protein
          Length = 161

 Score =  186 bits (472), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 92/134 (68%), Positives = 116/134 (86%), Gaps = 1/134 (0%)

Query: 16  YNTRDLIVREDIMGKAKELASLISTSEEVKHFQQAEQKIQNHERVQSLIAAIKKKQKEIV 75
           +NTRD +VREDIM KAKELA LI TSEEV+ +++AE++IQ ++R+QSLI+ IKKKQKE+V
Sbjct: 27  FNTRDFLVREDIMHKAKELADLIFTSEEVQQYRRAEKQIQGNDRIQSLISLIKKKQKEVV 86

Query: 76  AFES-FKNKEMVAKIEREIEVLQDEIDEIPVVNEFQQSQSDINYLLQLVISVIRDTVSEK 134
           AFE+ FKN++MV KIE E+E LQDE+D IP+V+EFQQSQ+DINYLLQLVIS++RDTVSEK
Sbjct: 87  AFETTFKNEQMVKKIEGEMETLQDELDGIPIVSEFQQSQTDINYLLQLVISIVRDTVSEK 146

Query: 135 INVEAGTEAPPSTC 148
           INVE  T   P+ C
Sbjct: 147 INVEDATVEAPAEC 160


>C0ZEZ7.1 C0ZEZ7_BREBN Putative uncharacterized protein
          Length = 147

 Score =  114 bits (285), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 58/130 (44%), Positives = 92/130 (70%)

Query: 20  DLIVREDIMGKAKELASLISTSEEVKHFQQAEQKIQNHERVQSLIAAIKKKQKEIVAFES 79
           ++  +++I+ KA+ELA++I+ + EV  F++AE +I+++ERVQ LI  +K+KQK++V FES
Sbjct: 5   NVFTQKEILDKARELAAMIARTNEVDFFKRAELQIKHNERVQDLIDTLKQKQKQMVMFES 64

Query: 80  FKNKEMVAKIEREIEVLQDEIDEIPVVNEFQQSQSDINYLLQLVISVIRDTVSEKINVEA 139
               E+V K+E E   L +E+D IP+V EF+QSQ D+N LLQ+V +VI +TVSE+I ++ 
Sbjct: 65  INKPELVKKVEDEYNQLHEELDAIPIVTEFKQSQVDVNDLLQMVTNVITNTVSERIILDT 124

Query: 140 GTEAPPSTCG 149
           G        G
Sbjct: 125 GGNPLTGKTG 134


>Q9KAB8.1 Q9KAB8_BACHD BH2371 protein
          Length = 146

 Score =  105 bits (261), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/125 (46%), Positives = 83/125 (66%)

Query: 23  VREDIMGKAKELASLISTSEEVKHFQQAEQKIQNHERVQSLIAAIKKKQKEIVAFESFKN 82
            R+DI  +A+ELA +I+ +EEV  F++AE++I  H RVQ +IA IKK QKE V  + +  
Sbjct: 6   TRDDIKQRARELALMIAETEEVDFFKRAEKQINEHLRVQEIIAEIKKYQKEAVNLQHYGK 65

Query: 83  KEMVAKIEREIEVLQDEIDEIPVVNEFQQSQSDINYLLQLVISVIRDTVSEKINVEAGTE 142
           KE + ++E +I+ LQ+EID IP+V EF+QSQ D+N LLQLV   I  TV++ I    G +
Sbjct: 66  KEALKEVEAKIDELQNEIDAIPLVQEFKQSQMDVNELLQLVSMTISKTVTDHIITSMGGD 125

Query: 143 APPST 147
               T
Sbjct: 126 LLRGT 130


>Q5L0E7.1 Q5L0E7_GEOKA Hypothetical conserved protein
          Length = 143

 Score =  104 bits (259), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 52/127 (40%), Positives = 87/127 (68%)

Query: 23  VREDIMGKAKELASLISTSEEVKHFQQAEQKIQNHERVQSLIAAIKKKQKEIVAFESFKN 82
            R+DI+ +AK+LA +I+ +EEV  F++AE+KI  +E+V++LI  +K  QK+ V  + +  
Sbjct: 5   TRDDILAQAKQLAKMIAETEEVDFFKRAEEKIHQNEKVRTLINELKSLQKQAVNLQHYGK 64

Query: 83  KEMVAKIEREIEVLQDEIDEIPVVNEFQQSQSDINYLLQLVISVIRDTVSEKINVEAGTE 142
            E + ++E +I+ + +E+ +IP+V+EFQQSQSD+N LLQLV S I +TV+++I    G +
Sbjct: 65  HEALKQVEAKIDAIYEELSQIPIVSEFQQSQSDVNDLLQLVASTISNTVTDEILASTGGD 124

Query: 143 APPSTCG 149
                 G
Sbjct: 125 VLRGETG 131


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.311    0.128    0.331 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 730,514,422
Number of extensions: 24231020
Number of successful extensions: 113017
Number of sequences better than 1.0e-05: 143
Number of HSP's gapped: 113072
Number of HSP's successfully gapped: 143
Length of query: 150
Length of database: 3,060,696,203
Length adjustment: 112
Effective length of query: 38
Effective length of database: 2,005,542,523
Effective search space: 76210615874
Effective search space used: 76210615874
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 126 (53.1 bits)