BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0504.0055.p (370 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K3B2.1 B3K3B2_9BACI NADH:flavin oxidoreductase/NADH oxidase 470 e-130 Q5WBM3.1 Q5WBM3_BACSK NADH-dependent flavin oxidoreductase 449 e-124 B4RZV9.1 B4RZV9_ALTMD NADH-dependent flavin oxidoreductase, Oye ... 447 e-123 Q15UJ2.1 Q15UJ2_PSEA6 NADH:flavin oxidoreductase/NADH oxidase 441 e-122 B1D9Y8.1 B1D9Y8_9BACL NADH:flavin oxidoreductase/NADH oxidase 441 e-122 >B3K3B2.1 B3K3B2_9BACI NADH:flavin oxidoreductase/NADH oxidase Length = 374 Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust. Identities = 226/360 (62%), Positives = 276/360 (76%), Gaps = 2/360 (0%) Query: 12 LFAPFRAGSLTLANRIVMAPMTRVFSPDGVPGEDVAAYYRRRAEGGVGLIVTEGTAINHP 71 LF P+ G+LTL +R+VMAPMTR FSP+GVPG DVAAYYRRRAE GVGLI+TEGT INHP Sbjct: 14 LFVPYTIGNLTLPSRVVMAPMTRGFSPNGVPGPDVAAYYRRRAENGVGLIITEGTLINHP 73 Query: 72 SAVSHQNIPNIHGEASLKGWAKVVEEVHAAGGKIVPQLWHVGMARTIGELPNADALPVGP 131 +A + N+PN HGEA+L GWA+VV +VH AGGKI+PQ+WH+GM R +G PN +ALP+GP Sbjct: 74 AATDNPNVPNFHGEAALNGWAEVVRQVHEAGGKIMPQIWHIGMTRPLGAEPNPEALPIGP 133 Query: 132 SGLNLAGEQITEPMTKEEISGIVXXXXXXXXXXXXVGFDGIELHGAHGYLIDQFFWEKTN 191 SGL+L G +T+PMTK+EI +V +GFDG+E+HGAHGYLIDQF WE+TN Sbjct: 134 SGLDLDGNVVTKPMTKDEIEQVVQAYADAAANAKRLGFDGVEIHGAHGYLIDQFLWERTN 193 Query: 192 KRTDEYGGDLEARTTFAVEIIDACRRAVGPDFPIILRFSQWKAGDYAAKLAQTPEELARF 251 +RTDEYGGD+ R FA+E++ A R+AVGPDFP+ +R SQWK Y AKLA TPE+L + Sbjct: 194 RRTDEYGGDMLKRARFAIEVVKAVRQAVGPDFPVAIRLSQWKTNQYEAKLADTPEKLGQL 253 Query: 252 LTPLSNAGVDIFHCSTRRFWLPEFEGSELNLAGWTKKITGKPTITVGSVGLSSEFGSAVT 311 LT LS+AGVDIFHCSTRRFW PEFEGS+LN AGW KK+TGK ITVGSVGL F S T Sbjct: 254 LTALSDAGVDIFHCSTRRFWEPEFEGSDLNFAGWAKKLTGKTVITVGSVGLDEVFTSLFT 313 Query: 312 EQNEEDNLD--RLMEKLEKAEFDLVAVGRALISDPAWPAKVQSGRKDEIIAFTPEATRTL 369 + D L+ +LE+ EFDLVAVGRAL++DP W AKV+ GR DE+ FTPE+ +TL Sbjct: 314 QGKGAGQRDLEELLNRLEENEFDLVAVGRALLADPEWAAKVRDGRFDELAPFTPESLQTL 373 >Q5WBM3.1 Q5WBM3_BACSK NADH-dependent flavin oxidoreductase Length = 346 Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust. Identities = 214/361 (59%), Positives = 264/361 (73%), Gaps = 26/361 (7%) Query: 12 LFAPFRAGSLTLANRIVMAPMTRVFSPDGVPGEDVAAYYRRRAEGGVGLIVTEGTAINHP 71 LF PF ++ L+NRIVMAPMTR FSP GVPG DVAAYYRRRAE GVGLIVTEGT I HP Sbjct: 10 LFQPFSVKNMNLSNRIVMAPMTRQFSPGGVPGPDVAAYYRRRAENGVGLIVTEGTVIEHP 69 Query: 72 SAVSHQNIPNIHGEASLKGWAKVVEEVHAAGGKIVPQLWHVGMARTIGELPNADALPVGP 131 + + +N+P+I+G+ +L GWA VV EVH AGG+I+PQ+WH+G +G+ Sbjct: 70 DSSNQENVPHIYGDKALNGWANVVAEVHKAGGRIIPQIWHMGARGHVGDY---------- 119 Query: 132 SGLNLAGEQITEPMTKEEISGIVXXXXXXXXXXXXVGFDGIELHGAHGYLIDQFFWEKTN 191 T+ +++ IV +GFDGIELHGAH YLIDQFFW++TN Sbjct: 120 --------------TENDVAAIVDAFAQAAAEAKRIGFDGIELHGAHQYLIDQFFWDQTN 165 Query: 192 KRTDEYGGDLEARTTFAVEIIDACRRAVGPDFPIILRFSQWKAGDYAAKLAQTPEELARF 251 RTD YGGD+ RT FAVE+I+ACRRAVGPDFPI+LRFSQWK+ DY AKLA T EL +F Sbjct: 166 PRTDRYGGDMVERTRFAVEVIEACRRAVGPDFPIVLRFSQWKSSDYTAKLATTAAELEQF 225 Query: 252 LTPLSNAGVDIFHCSTRRFWLPEFEGSELNLAGWTKKITGKPTITVGSVGLSSEFGSAVT 311 L PL++AGVD+FHCSTRRFW PEFEGS+LNLAGWTKK+TGKPTITVGSVGL SEF Sbjct: 226 LAPLTDAGVDVFHCSTRRFWEPEFEGSDLNLAGWTKKLTGKPTITVGSVGLDSEFTKLFA 285 Query: 312 EQNEE--DNLDRLMEKLEKAEFDLVAVGRALISDPAWPAKVQSGRKDEIIAFTPEATRTL 369 E N++ L+EKLE+ EFDLVA+GRAL++DPAW +K++ GR +E+ F+P+A +TL Sbjct: 286 EGKGAGVSNINGLIEKLEQGEFDLVAIGRALLADPAWASKIRDGRINELTPFSPDAVKTL 345 Query: 370 Y 370 Y Sbjct: 346 Y 346 >B4RZV9.1 B4RZV9_ALTMD NADH-dependent flavin oxidoreductase, Oye family protein Length = 365 Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust. Identities = 212/364 (58%), Positives = 262/364 (71%), Gaps = 1/364 (0%) Query: 7 MNTDKLFAPFRAGSLTLANRIVMAPMTRVFSPDGVPGEDVAAYYRRRAEGGVGLIVTEGT 66 M + LF P+ G+L+L NRIVMAPMTR FSP+GVP DVA YY+RRA+GG GLI+TEGT Sbjct: 1 MPANALFKPYSQGNLSLTNRIVMAPMTRQFSPNGVPTSDVAGYYKRRAQGGTGLIITEGT 60 Query: 67 AINHPSAVSHQNIPNIHGEASLKGWAKVVEEVHAAGGKIVPQLWHVGMARTIGELPNADA 126 +N A NIP HGE +L GW VV+EVH+ GGKI+PQLWHVGMAR + P + Sbjct: 61 TVNDKVATMDANIPQFHGEEALTGWKNVVDEVHSVGGKIMPQLWHVGMARVAEKAPYPEL 120 Query: 127 LPVGPSGLNLAGEQITEPMTKEEISGIVXXXXXXXXXXXXVGFDGIELHGAHGYLIDQFF 186 GPSGL G+Q EPMT+E I ++ +G DG+E+HGAHGYLIDQFF Sbjct: 121 SSAGPSGLFKPGKQGAEPMTEEHIESVIAAFAQAAADAKSIGMDGVEIHGAHGYLIDQFF 180 Query: 187 WEKTNKRTDEYGGDLEARTTFAVEIIDACRRAVGPDFPIILRFSQWKAGDYAAKLAQTPE 246 WE TN+RTD +GG ++ R FAVEII A R A GPDFPI+LR+SQWK DY A+LA TP+ Sbjct: 181 WEGTNQRTDSWGGSMDNRGRFAVEIIKAIRAATGPDFPIVLRYSQWKQQDYTARLATTPQ 240 Query: 247 ELARFLTPLSNAGVDIFHCSTRRFWLPEFEGSELNLAGWTKKITGKPTITVGSVGLSSEF 306 EL +FL PLS+AGVDIFHCS RR+W EF+GS+LNLAGWTKKITGKPTITVGSVGL+ +F Sbjct: 241 ELEQFLMPLSSAGVDIFHCSQRRYWESEFDGSDLNLAGWTKKITGKPTITVGSVGLNDDF 300 Query: 307 GSAVTEQNEEDN-LDRLMEKLEKAEFDLVAVGRALISDPAWPAKVQSGRKDEIIAFTPEA 365 A Q+ +D L+E+LE+ EFDLVAVGRAL+ DP W K++ R DE+ ++ +A Sbjct: 301 FGAFKGQDSSTRAVDDLLERLEEGEFDLVAVGRALLQDPNWANKIKENRTDELEQYSGKA 360 Query: 366 TRTL 369 +L Sbjct: 361 LASL 364 >Q15UJ2.1 Q15UJ2_PSEA6 NADH:flavin oxidoreductase/NADH oxidase Length = 367 Score = 441 bits (1135), Expect = e-122, Method: Compositional matrix adjust. Identities = 211/366 (57%), Positives = 263/366 (71%), Gaps = 1/366 (0%) Query: 5 LDMNTDKLFAPFRAGSLTLANRIVMAPMTRVFSPDGVPGEDVAAYYRRRAEGGVGLIVTE 64 + D LFAPF L+L NR+VMAPMTR FSP GVP DVA YYRRRA+GG GLI+TE Sbjct: 1 MSNKVDALFAPFTHKGLSLDNRVVMAPMTREFSPGGVPTSDVADYYRRRAQGGTGLIITE 60 Query: 65 GTAINHPSAVSHQNIPNIHGEASLKGWAKVVEEVHAAGGKIVPQLWHVGMARTIGELPNA 124 GT IN P A IP HG+A+L GW K V+ VH AGGKI+PQLWHVGMAR + P Sbjct: 61 GTTINDPVATMSDRIPQFHGDAALAGWKKTVDAVHGAGGKIMPQLWHVGMARVAQKAPFP 120 Query: 125 DALPVGPSGLNLAGEQITEPMTKEEISGIVXXXXXXXXXXXXVGFDGIELHGAHGYLIDQ 184 + VGPSGL G+Q EPMT+ +I ++ +GFDGIE+HGAHGYLIDQ Sbjct: 121 ELPSVGPSGLFKPGKQGAEPMTQAQIETVINGFATAAADAQRIGFDGIEIHGAHGYLIDQ 180 Query: 185 FFWEKTNKRTDEYGGDLEARTTFAVEIIDACRRAVGPDFPIILRFSQWKAGDYAAKLAQT 244 FFWE TN+RTDE+GG + R+ AVEI+ A R A PDFPI+LR+SQWK DY+A+LA+T Sbjct: 181 FFWEGTNQRTDEWGGSMANRSRLAVEIVKAIRAATSPDFPIVLRYSQWKQQDYSARLAET 240 Query: 245 PEELARFLTPLSNAGVDIFHCSTRRFWLPEFEGSELNLAGWTKKITGKPTITVGSVGLSS 304 P+ L FL PLS+AGVDIFHCS RR+W EFEGS+LNLAGWTKK+TGKPTI+VGSVGL+ Sbjct: 241 PQLLEEFLAPLSDAGVDIFHCSQRRYWENEFEGSDLNLAGWTKKLTGKPTISVGSVGLNE 300 Query: 305 EFGSAVTEQNEED-NLDRLMEKLEKAEFDLVAVGRALISDPAWPAKVQSGRKDEIIAFTP 363 +F SA Q ++D L+E+++K EFDL+AVGRAL+ D W K+++G+ +E+ ++ Sbjct: 301 DFFSAFAGQGSNTRSIDDLIERMDKGEFDLIAVGRALLQDANWTNKIRNGKLEELEQYSG 360 Query: 364 EATRTL 369 EA TL Sbjct: 361 EALTTL 366 >B1D9Y8.1 B1D9Y8_9BACL NADH:flavin oxidoreductase/NADH oxidase Length = 346 Score = 441 bits (1134), Expect = e-122, Method: Compositional matrix adjust. Identities = 212/361 (58%), Positives = 259/361 (71%), Gaps = 26/361 (7%) Query: 12 LFAPFRAGSLTLANRIVMAPMTRVFSPDGVPGEDVAAYYRRRAEGGVGLIVTEGTAINHP 71 LF PF G LTLANRIVMAPMTR SP+GVPG +VAAYYRRRAE VGLI+TEGT +NHP Sbjct: 10 LFRPFTLGQLTLANRIVMAPMTRAMSPNGVPGTNVAAYYRRRAENHVGLIITEGTVVNHP 69 Query: 72 SAVSHQNIPNIHGEASLKGWAKVVEEVHAAGGKIVPQLWHVGMARTIGELPNADALPVGP 131 + + +++P+ +GE +LKGWA V EVHAAGGKI+PQ+WH+G + + + Sbjct: 70 DSSNSKDVPHFYGEEALKGWANVAAEVHAAGGKIMPQIWHMGTKKQVNDY---------- 119 Query: 132 SGLNLAGEQITEPMTKEEISGIVXXXXXXXXXXXXVGFDGIELHGAHGYLIDQFFWEKTN 191 T+ EI+ IV +GFDGIELHGAHGYLIDQFFWEK+N Sbjct: 120 --------------TEAEITAIVQAFADAASEAKRIGFDGIELHGAHGYLIDQFFWEKSN 165 Query: 192 KRTDEYGGDLEARTTFAVEIIDACRRAVGPDFPIILRFSQWKAGDYAAKLAQTPEELARF 251 +RTD YGG L ART FA E++ ACR AVGPDFPI+LR SQWK +Y KLA PEEL +F Sbjct: 166 QRTDRYGGSLLARTRFAEEVVRACREAVGPDFPIVLRISQWKEREYTVKLAYNPEELEQF 225 Query: 252 LTPLSNAGVDIFHCSTRRFWLPEFEGSELNLAGWTKKITGKPTITVGSVGLSSEFGSAVT 311 L PL +AGVDIFHCSTRR+W PEF GS+LNLAGW K+ITGKPTITVGSVGL S+F + T Sbjct: 226 LQPLVDAGVDIFHCSTRRYWEPEFAGSDLNLAGWVKRITGKPTITVGSVGLDSDFMTFFT 285 Query: 312 EQNEEDN--LDRLMEKLEKAEFDLVAVGRALISDPAWPAKVQSGRKDEIIAFTPEATRTL 369 E N +D L++KLEK E DLVA+GRAL+ DPAW +K++ G+ E++ FTPEA +TL Sbjct: 286 EGKSSANTGIDGLVQKLEKDECDLVAIGRALLVDPAWASKIREGKLTELVPFTPEALKTL 345 Query: 370 Y 370 + Sbjct: 346 F 346 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.136 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,259,761,135 Number of extensions: 95253062 Number of successful extensions: 243807 Number of sequences better than 1.0e-05: 3843 Number of HSP's gapped: 234430 Number of HSP's successfully gapped: 3865 Length of query: 370 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 233 Effective length of database: 1,770,017,148 Effective search space: 412413995484 Effective search space used: 412413995484 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)