BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0504.0054.p (281 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q8ESW9.1 RHAD_OCEIH Rhamnulose-1-phosphate aldolase EC=4.1.2.19 372 e-101 C1P6W2.1 C1P6W2_BACCO Rhamnulose-1-phosphate aldolase EC=4.1.2.19 362 2e-98 C4VI35.1 C4VI35_ENTFA Rhamnulose-1-phosphate aldolase EC=4.1.2.19 347 1e-93 C2H084.1 C2H084_ENTFA Rhamnulose-1-phosphate aldolase EC=4.1.2.19 345 3e-93 C2DI35.1 C2DI35_ENTFA Rhamnulose-1-phosphate aldolase EC=4.1.2.19 345 3e-93 >Q8ESW9.1 RHAD_OCEIH Rhamnulose-1-phosphate aldolase EC=4.1.2.19 Length = 278 Score = 372 bits (954), Expect = e-101, Method: Compositional matrix adjust. Identities = 167/262 (63%), Positives = 210/262 (80%), Gaps = 2/262 (0%) Query: 15 VEAPFIREMSEITHHMWSLGWDELNGGNVSCLLDEEEVAKYISIREPLRTIKLTFPVQEL 74 ++APF++EM T+ MW LGWDELNGGN+S LL EEEV Y + + RTI L FPV EL Sbjct: 11 LDAPFMKEMMNTTYDMWKLGWDELNGGNISYLLKEEEVRSYFDLNQVKRTISLDFPVIEL 70 Query: 75 AGKYFIVTGSGKYFRNVIKDPEANLGVLRVSGSGESVEVLWGLRDGAVPTSELASHFMSH 134 A +YF+VTGSGK+FR +I++PE L VLRV+ GESVE+LWGL DG PTSELASHFMSH Sbjct: 71 ANQYFLVTGSGKFFRKIIENPEECLAVLRVTSDGESVELLWGLSDGGRPTSELASHFMSH 130 Query: 135 IERLKVDPSHRIVLHTHATNVIAMTFTHDLDELKFTKTLWEMCTECLVVFPDGVSVIPWM 194 I RLK DP+HR+++HTHATN+IAMTFTH+LDE++FT+TLW+MCTECLVVFP+GV ++PWM Sbjct: 131 IVRLKHDPNHRVIMHTHATNLIAMTFTHELDEVQFTRTLWQMCTECLVVFPEGVGILPWM 190 Query: 195 VPGSSDIGRATADKMKDYRVVVWPQHGIFVTGATMDATFGLVETIEKAATVYNLIGGR-- 252 VPG+S+IG+ATA+KM +YR+ +W HGIF G ++D FGL+ET+EKAA VYNL+ Sbjct: 191 VPGTSEIGKATAEKMNEYRLAIWSHHGIFGAGESIDQVFGLIETVEKAAKVYNLVNAHPD 250 Query: 253 AIRQKITDRQLADLAAAFRVTP 274 +Q ITD+QL DLA AF V P Sbjct: 251 GAKQVITDQQLIDLAEAFHVNP 272 >C1P6W2.1 C1P6W2_BACCO Rhamnulose-1-phosphate aldolase EC=4.1.2.19 Length = 278 Score = 362 bits (930), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 166/266 (62%), Positives = 208/266 (78%), Gaps = 1/266 (0%) Query: 15 VEAPFIREMSEITHHMWSLGWDELNGGNVSCLLDEEEVAKYISIREPLRTIKLTFPVQEL 74 +EAPF +EM + T +++ LGWDE NGGN+S LL EEEVA Y+ + +R I + F + L Sbjct: 11 IEAPFTQEMMKTTANLYRLGWDERNGGNISYLLKEEEVAPYLDVNAVIRAIPVKFDARAL 70 Query: 75 AGKYFIVTGSGKYFRNVIKDPEANLGVLRVSGSGESVEVLWGLRDGAVPTSELASHFMSH 134 AGKYFIVTGSGKYF+NV +P NLG++RV+ G++VE+LWGL G +PTSEL SHFMSH Sbjct: 71 AGKYFIVTGSGKYFKNVADNPAENLGLIRVAQDGQNVELLWGLEGGGMPTSELPSHFMSH 130 Query: 135 IERLKVDPSHRIVLHTHATNVIAMTFTHDLDELKFTKTLWEMCTECLVVFPDGVSVIPWM 194 I RL+VDP +RIV+H HAT+++AMTFTH LDE FT+TLW+MCTECLVVFP+GV +IPW+ Sbjct: 131 IARLEVDPENRIVMHNHATHLLAMTFTHTLDEKAFTRTLWQMCTECLVVFPEGVGIIPWI 190 Query: 195 VPGSSDIGRATADKMKDYRVVVWPQHGIFVTGATMDATFGLVETIEKAATVYNLIGGR-A 253 VPG+++IG ATA KMKDYR+V+WP HGI+ G TMD TFGL+ET EKAA VY + + Sbjct: 191 VPGTNEIGEATAAKMKDYRLVIWPHHGIYGAGRTMDETFGLIETAEKAAQVYTYVQAQGG 250 Query: 254 IRQKITDRQLADLAAAFRVTPRAGIL 279 I+Q ITDRQL DLA AF V PR G L Sbjct: 251 IKQTITDRQLKDLADAFGVVPREGFL 276 >C4VI35.1 C4VI35_ENTFA Rhamnulose-1-phosphate aldolase EC=4.1.2.19 Length = 282 Score = 347 bits (889), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 160/267 (59%), Positives = 207/267 (77%), Gaps = 1/267 (0%) Query: 15 VEAPFIREMSEITHHMWSLGWDELNGGNVSCLLDEEEVAKYISIREPLRTIKLTFPVQEL 74 ++APF+ EM + T +++ LGWDE NGGN+S LL EEE+ +++ + LR I + F +L Sbjct: 7 LQAPFVEEMVKTTKNLYRLGWDERNGGNISYLLKEEEILPFLNPTQVLRKIPMKFDATKL 66 Query: 75 AGKYFIVTGSGKYFRNVIKDPEANLGVLRVSGSGESVEVLWGLRDGAVPTSELASHFMSH 134 AGKYFIVTGSGKYF+NV P NLG+LRVS +G+ +E+LWGL D AVPTSEL SHFMSH Sbjct: 67 AGKYFIVTGSGKYFKNVCDAPSENLGILRVSENGQELELLWGLEDEAVPTSELPSHFMSH 126 Query: 135 IERLKVDPSHRIVLHTHATNVIAMTFTHDLDELKFTKTLWEMCTECLVVFPDGVSVIPWM 194 I RL VDP +RIV+H HA++++AM+FTH+LDE FT+TLW+MCTECLVVFPDGV +IPW+ Sbjct: 127 IARLAVDPENRIVMHNHASHLLAMSFTHELDEKVFTRTLWQMCTECLVVFPDGVGIIPWL 186 Query: 195 VPGSSDIGRATADKMKDYRVVVWPQHGIFVTGATMDATFGLVETIEKAATVYNLIGGR-A 253 VPG+++IG ATA+KMK+ R+V+WPQHGI+ TG MD FGL+ET EKAA VY + + Sbjct: 187 VPGTNEIGVATAEKMKESRLVLWPQHGIYGTGRDMDEVFGLIETAEKAAEVYTYVCAQGG 246 Query: 254 IRQKITDRQLADLAAAFRVTPRAGILE 280 +RQ I+D L LA AF VTP+ G LE Sbjct: 247 VRQTISDADLWRLAEAFGVTPKVGYLE 273 >C2H084.1 C2H084_ENTFA Rhamnulose-1-phosphate aldolase EC=4.1.2.19 Length = 282 Score = 345 bits (884), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 159/267 (59%), Positives = 206/267 (77%), Gaps = 1/267 (0%) Query: 15 VEAPFIREMSEITHHMWSLGWDELNGGNVSCLLDEEEVAKYISIREPLRTIKLTFPVQEL 74 ++APF+ EM + T +++ LGWDE NGGN+S LL EEE+ +++ + LR I + F +L Sbjct: 7 LQAPFVEEMVKTTKNLYRLGWDERNGGNISYLLKEEEILPFLNPTQVLRKIPMKFDATKL 66 Query: 75 AGKYFIVTGSGKYFRNVIKDPEANLGVLRVSGSGESVEVLWGLRDGAVPTSELASHFMSH 134 AGKYFIVTGSGKYF+NV P NLG+LRVS +G+ +E+LWGL D AVPTSEL SHFMSH Sbjct: 67 AGKYFIVTGSGKYFKNVCDAPSENLGILRVSENGQELELLWGLEDEAVPTSELPSHFMSH 126 Query: 135 IERLKVDPSHRIVLHTHATNVIAMTFTHDLDELKFTKTLWEMCTECLVVFPDGVSVIPWM 194 I RL VDP +RIV+H HA++++AM+FTH+LDE FT+TLW+MCTECLVVFPDGV +IPW+ Sbjct: 127 IARLAVDPENRIVMHNHASHLLAMSFTHELDEKVFTRTLWQMCTECLVVFPDGVGIIPWL 186 Query: 195 VPGSSDIGRATADKMKDYRVVVWPQHGIFVTGATMDATFGLVETIEKAATVYNLIGGR-A 253 VPG+++IG ATA+KMK+ R+V+WPQHGI+ G MD FGL+ET EKAA VY + + Sbjct: 187 VPGTNEIGVATAEKMKESRLVLWPQHGIYGAGRDMDEVFGLIETAEKAAEVYTYVCAQGG 246 Query: 254 IRQKITDRQLADLAAAFRVTPRAGILE 280 +RQ I+D L LA AF VTP+ G LE Sbjct: 247 VRQTISDADLWRLAEAFGVTPKVGYLE 273 >C2DI35.1 C2DI35_ENTFA Rhamnulose-1-phosphate aldolase EC=4.1.2.19 Length = 282 Score = 345 bits (884), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 159/267 (59%), Positives = 206/267 (77%), Gaps = 1/267 (0%) Query: 15 VEAPFIREMSEITHHMWSLGWDELNGGNVSCLLDEEEVAKYISIREPLRTIKLTFPVQEL 74 ++APF+ EM + T +++ LGWDE NGGN+S LL EEE+ +++ + LR I + F +L Sbjct: 7 LQAPFVEEMVKTTKNLYRLGWDERNGGNISYLLKEEEILPFLNPTQVLRKIPMKFDATKL 66 Query: 75 AGKYFIVTGSGKYFRNVIKDPEANLGVLRVSGSGESVEVLWGLRDGAVPTSELASHFMSH 134 AGKYFIVTGSGKYF+NV P NLG+LRVS +G+ +E+LWGL D AVPTSEL SHFMSH Sbjct: 67 AGKYFIVTGSGKYFKNVCDAPSENLGILRVSENGQELELLWGLEDEAVPTSELPSHFMSH 126 Query: 135 IERLKVDPSHRIVLHTHATNVIAMTFTHDLDELKFTKTLWEMCTECLVVFPDGVSVIPWM 194 I RL VDP +RIV+H HA++++AM+FTH+LDE FT+TLW+MCTECLVVFPDGV +IPW+ Sbjct: 127 IARLAVDPENRIVMHNHASHLLAMSFTHELDEKVFTRTLWQMCTECLVVFPDGVGIIPWL 186 Query: 195 VPGSSDIGRATADKMKDYRVVVWPQHGIFVTGATMDATFGLVETIEKAATVYNLIGGR-A 253 VPG+++IG ATA+KMK+ R+V+WPQHGI+ G MD FGL+ET EKAA VY + + Sbjct: 187 VPGTNEIGVATAEKMKESRLVLWPQHGIYGAGRDMDEVFGLIETAEKAAEVYTYVCAQGG 246 Query: 254 IRQKITDRQLADLAAAFRVTPRAGILE 280 +RQ I+D L LA AF VTP+ G LE Sbjct: 247 VRQTISDADLWRLAEAFGVTPKVGYLE 273 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,669,729,253 Number of extensions: 67980524 Number of successful extensions: 174803 Number of sequences better than 1.0e-05: 210 Number of HSP's gapped: 174541 Number of HSP's successfully gapped: 211 Length of query: 281 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 147 Effective length of database: 1,798,280,193 Effective search space: 264347188371 Effective search space used: 264347188371 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)